Difference between revisions of "ENST00000539784.1"
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sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>| | sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(S)]][[Category:lnc-TEAD4-2]] | + | [[Category:Intronic(S)]][[Category:lnc-TEAD4-2]][[Category:NONHSAG010209]] |
Revision as of 13:31, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000539784.1 |
Source |
Gencode19 |
Same with |
lnc-TEAD4-2:1,NONHSAT025504 |
Classification |
intronic(S) |
Length |
562 nt |
Genomic location |
chr12+:3258963..3260642 |
Exon number |
2 |
Exons |
3258963..3259032,3260151..3260642 |
Genome context |
|
Sequence |
000001 GTCTGAAGCT CTGGGAACGG GGGCAGAAAG CTGTATTTCG AAAAGCTTCC CACATGATTT TGATGCAAAG CGTCCCCAGC 000080
000081 CTCCAGCCAG CTTCGCTAGC CAGGGACACA ATTGGATTGC AATTTCTAGC ACTTCCTGGA GATCAGGTCC CTGAAGAGCT 000160 000161 ATAAAAATCC AGCGGTGTTT CTGGCCACCT TTCCATGTGG TTTGTAGTGC ACTGTCAGTC ACACACGCCT GCAGAGCATG 000240 000241 TGTGTGTTTG TGTTTGCACA CGTGTGTGCA TGTGTGTGAG TGGGTGCATG CATGCATGTG TATTTGGCTT TAAGGGAGGC 000320 000321 TCTCATATTG CATTACCTAT GTTGCTAGTT TCTGGCTGCC AGTTTGCATT TCTTAGGCGG ATTTTCTGAT TCCAGGCTCG 000400 000401 GGAGGGCTCC CCTGCACTGT ATGTAATTGG GCACGAAGCC CGTGGTGGGG TGGATTTGGG TAATGGCAGG GCTGCATTCC 000480 000481 TCCCATTCTT TTCTCACAGG AAAAAGTGCC TGGATATAAC CCTGTGGTGG GGATTGCTTA CAGGAGGGGC CGGCTGCCTG 000560 000561 CC |
Predicted Small Protein
Name | ENST00000539784.1_smProtein_194:388 |
Length | 65 |
Molecular weight | 7093.5765 |
Aromaticity | 0.109375 |
Instability index | 59.121875 |
Isoelectric point | 8.46173095703 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0558205264087 |
Amino acid sequence | MWFVVHCQSHTPAEHVCVCVCTRVCMCVSGCMHACVFGFKGGSHIALPMLLVSGCQFAFL RRIF |
Secondary structure | LEEEEEELLLLLLLEEEEEEEEEEEEEELLLEEEEEEELLLLLLEEEHHHHLLLHHHHHH HHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii iiii |