Difference between revisions of "NONHSAT138158"
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sequence = <dnaseq>TCCTGGAACATAGCCAGTCTACTTGCAGTGAAACAATAATCATTCAAACACAGCCTCTCAAGGATGGAAAATGGATAACTGTCCCATATTCAAACAGCTGTAATATGATAGATTAAAGTGGGCTAACCACAAGCTGGGTGAACAGAAATTTTTTTTTTTTTTTAGTATCACTCTGTTGCACAAGCTGGAGTGCAGCGGCACGATCTCGGCTCACTACAACCTCCAACTCCCGGGTTCAAGCAATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACTATGTTGGCCAGGCCGGTCTTGAACTCCTGACCACTTGATCCGCCTGCCTGGGCCTCCCAAAGTTCTGAGATTACAGACGTGACCCACTGCACTGGCCAGAAAAATTCTATATATGTGTTGAGTCATGACTTCAAAACACAGACTGCAGTTGCTGGGGAAAATTGCAACAGACAGAAAGAATACAAGGTGTGCCATACAACGGACAGAAAGAATACAAGGACTAGGGCTGCTCATTCTAAGAAAGAGCATTAAAAGGCCTGGATACTCTCAAAGAGCTTTCAGCTGAACAGAAGGAGGACAATGCAAGGCCACATTTGGCGCCATCTAGTGCTTAATGAGTGCCATCTTGGATGGCCCCCAAAAGCAAAGAGTCAAGGGCTCCAGCGTGATATTTTAAAAGTTTCTCTGACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCCAGCCCATCCTGGCTAACACGGTGAAACCCCGTCT</dnaseq>| | sequence = <dnaseq>TCCTGGAACATAGCCAGTCTACTTGCAGTGAAACAATAATCATTCAAACACAGCCTCTCAAGGATGGAAAATGGATAACTGTCCCATATTCAAACAGCTGTAATATGATAGATTAAAGTGGGCTAACCACAAGCTGGGTGAACAGAAATTTTTTTTTTTTTTTAGTATCACTCTGTTGCACAAGCTGGAGTGCAGCGGCACGATCTCGGCTCACTACAACCTCCAACTCCCGGGTTCAAGCAATTCTCATGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTCACTATGTTGGCCAGGCCGGTCTTGAACTCCTGACCACTTGATCCGCCTGCCTGGGCCTCCCAAAGTTCTGAGATTACAGACGTGACCCACTGCACTGGCCAGAAAAATTCTATATATGTGTTGAGTCATGACTTCAAAACACAGACTGCAGTTGCTGGGGAAAATTGCAACAGACAGAAAGAATACAAGGTGTGCCATACAACGGACAGAAAGAATACAAGGACTAGGGCTGCTCATTCTAAGAAAGAGCATTAAAAGGCCTGGATACTCTCAAAGAGCTTTCAGCTGAACAGAAGGAGGACAATGCAAGGCCACATTTGGCGCCATCTAGTGCTTAATGAGTGCCATCTTGGATGGCCCCCAAAAGCAAAGAGTCAAGGGCTCCAGCGTGATATTTTAAAAGTTTCTCTGACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCGGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCCAGCCCATCCTGGCTAACACGGTGAAACCCCGTCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG055096]] | + | [[Category:Intergenic]][[Category:NONHSAG055096]][[Category:Transcripts]] |
Latest revision as of 02:48, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138158 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
863 nt |
Genomic location |
chrX+:109085564..109158741 |
Exon number |
2 |
Exons |
109085564..109086189,109158505..109158741 |
Genome context |
|
Sequence |
000001 TCCTGGAACA TAGCCAGTCT ACTTGCAGTG AAACAATAAT CATTCAAACA CAGCCTCTCA AGGATGGAAA ATGGATAACT 000080
000081 GTCCCATATT CAAACAGCTG TAATATGATA GATTAAAGTG GGCTAACCAC AAGCTGGGTG AACAGAAATT TTTTTTTTTT 000160 000161 TTTAGTATCA CTCTGTTGCA CAAGCTGGAG TGCAGCGGCA CGATCTCGGC TCACTACAAC CTCCAACTCC CGGGTTCAAG 000240 000241 CAATTCTCAT GCCTCAGCCT CCGGAGTAGC TGGGACTACA GGCACGTGCC ACCATGCCCG GCTAATTTTT GTATTTTTAG 000320 000321 TGGAGATGGG GTTTCACTAT GTTGGCCAGG CCGGTCTTGA ACTCCTGACC ACTTGATCCG CCTGCCTGGG CCTCCCAAAG 000400 000401 TTCTGAGATT ACAGACGTGA CCCACTGCAC TGGCCAGAAA AATTCTATAT ATGTGTTGAG TCATGACTTC AAAACACAGA 000480 000481 CTGCAGTTGC TGGGGAAAAT TGCAACAGAC AGAAAGAATA CAAGGTGTGC CATACAACGG ACAGAAAGAA TACAAGGACT 000560 000561 AGGGCTGCTC ATTCTAAGAA AGAGCATTAA AAGGCCTGGA TACTCTCAAA GAGCTTTCAG CTGAACAGAA GGAGGACAAT 000640 000641 GCAAGGCCAC ATTTGGCGCC ATCTAGTGCT TAATGAGTGC CATCTTGGAT GGCCCCCAAA AGCAAAGAGT CAAGGGCTCC 000720 000721 AGCGTGATAT TTTAAAAGTT TCTCTGACCT GGCCGGGCGC GGTGGCTCAC GCCTGTAATC CCGGCACTTT GGGAGGCCGA 000800 000801 GGCGGGTGGA TCACGAGGTC AGGAGATCCA GCCCATCCTG GCTAACACGG TGAAACCCCG TCT |
Predicted Small Protein
Name | NONHSAT138158_smProtein_638:844 |
Length | 69 |
Molecular weight | 7326.3321 |
Aromaticity | 0.0588235294118 |
Instability index | 53.8029411765 |
Isoelectric point | 9.84014892578 |
Runs | 10 |
Runs residual | 0.00655802861685 |
Runs probability | 0.0467938526762 |
Amino acid sequence | MQGHIWRHLVLNECHLGWPPKAKSQGLQRDILKVSLTWPGAVAHACNPGTLGGRGGWITR SGDPAHPG |
Secondary structure | LLLEEEEEEEELLLLLLLLLLLLLLLLHHHEEEEEELLLLLEEELLLLLLLLLLLLEEEL LLLLLLLL |
PRMN | - |
PiMo | - |