Difference between revisions of "NONHSAT022023"
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sequence = <dnaseq>AAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAggccccggccccgccgcccccggcccgcccccgcggTGCCCTCTCTCCTCCCTCTTTGTGCGTCTcgcgccgccgccgcccgccgcgTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGGTAAATATACGTTCTGCATCCAAATGCACTTTGAGATTGTTACGATTTATTCTGAGCAAGATCTGCATTTTTTGAAAGTTTGAGATTGTAGTTATCTTTTTTGAGATGAGATACTTTCACGACTTTGGTATCATCTGTCAGTTTTTGCCCAGTGAGTTCTGCATTTGCAGCTCCTTGTTTTGGTCTGTTCGTAACTGCAGTGTTCTCCATGAGTATCAGGAAGGTAGGGTTTCACTTAGGAGTAAGAACAGTCCCCAGTCCAGCAGCCACCCTTTTCAGCTGCTGTTCATTGCCAGTTGATGAGGTGAGTGTCATCTGCCTCTCTGGACAGGCCCCAGTGGAGAACACCGCAGGTACTGTAAACCAAGTACTTTTCACAGCGTGGCCTTTCACCATAATTTTATATTTCTCCCCCTAAAATGTGGTCTTTTACTTTTTATAGGTACTTTCTG</dnaseq>| | sequence = <dnaseq>AAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAggccccggccccgccgcccccggcccgcccccgcggTGCCCTCTCTCCTCCCTCTTTGTGCGTCTcgcgccgccgccgcccgccgcgTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGGTAAATATACGTTCTGCATCCAAATGCACTTTGAGATTGTTACGATTTATTCTGAGCAAGATCTGCATTTTTTGAAAGTTTGAGATTGTAGTTATCTTTTTTGAGATGAGATACTTTCACGACTTTGGTATCATCTGTCAGTTTTTGCCCAGTGAGTTCTGCATTTGCAGCTCCTTGTTTTGGTCTGTTCGTAACTGCAGTGTTCTCCATGAGTATCAGGAAGGTAGGGTTTCACTTAGGAGTAAGAACAGTCCCCAGTCCAGCAGCCACCCTTTTCAGCTGCTGTTCATTGCCAGTTGATGAGGTGAGTGTCATCTGCCTCTCTGGACAGGCCCCAGTGGAGAACACCGCAGGTACTGTAAACCAAGTACTTTTCACAGCGTGGCCTTTCACCATAATTTTATATTTCTCCCCCTAAAATGTGGTCTTTTACTTTTTATAGGTACTTTCTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG008625]] | + | [[Category:Sense]][[Category:NONHSAG008625]][[Category:Transcripts]] |
Latest revision as of 20:35, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT022023 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
983 nt |
| Genomic location |
chr11-:64543518..64546235 |
| Exon number |
2 |
| Exons |
64543518..64544098,64545834..64546235 |
| Genome context |
|
| Sequence |
000001 AAATGAAGTG CGCGCTGCGA CACCTCCCAG CCCACCGAAC TCCGCCGCCA TTTCCTCGCT TGGCCTAACG GTTCGGCCAA 000080
000081 TCCCAGCGCG CATCAAGAAG GACTGAGGCT CCGCCAATCG GAGGCCGCCG ATTTCGACCC TTCGCCTCGG CCCGGCCCAA 000160 000161 TCCAggcccc ggccccgccg cccccggccc gcccccgcgg TGCCCTCTCT CCTCCCTCTT TGTGCGTCTc gcgccgccgc 000240 000241 cgcccgccgc gTGAGAGGAC GGGCTCCGCG CGCTCCGGCA GCGCATTCGG GTCCCCTCCC CCCGGGAGGC TTGCGAAGGA 000320 000321 GAAGCCGCCG CAGAGGAAAA GCAGGTGCCG GTGCCTGTCC CCGGGGGCGC CATGGCGACC GGAGCGAACG CCACGCCGTT 000400 000401 GGACTTCCCA AGTAAGAAGC GGAAGAGGAG CCGCTGGAAC CAAGACACAA TGGAACAGAA GACAGTGATT CCAGGAATGC 000480 000481 CTACAGTTAT TCCCCCTGGA CTTACTCGAG AACAAGAAAG AGCTTATATA GGTAAATATA CGTTCTGCAT CCAAATGCAC 000560 000561 TTTGAGATTG TTACGATTTA TTCTGAGCAA GATCTGCATT TTTTGAAAGT TTGAGATTGT AGTTATCTTT TTTGAGATGA 000640 000641 GATACTTTCA CGACTTTGGT ATCATCTGTC AGTTTTTGCC CAGTGAGTTC TGCATTTGCA GCTCCTTGTT TTGGTCTGTT 000720 000721 CGTAACTGCA GTGTTCTCCA TGAGTATCAG GAAGGTAGGG TTTCACTTAG GAGTAAGAAC AGTCCCCAGT CCAGCAGCCA 000800 000801 CCCTTTTCAG CTGCTGTTCA TTGCCAGTTG ATGAGGTGAG TGTCATCTGC CTCTCTGGAC AGGCCCCAGT GGAGAACACC 000880 000881 GCAGGTACTG TAAACCAAGT ACTTTTCACA GCGTGGCCTT TCACCATAAT TTTATATTTC TCCCCCTAAA ATGTGGTCTT 000960 000961 TTACTTTTTA TAGGTACTTT CTG |
Predicted Small Protein
| Name | NONHSAT022023_smProtein_371:613 |
| Length | 81 |
| Molecular weight | 9287.6623 |
| Aromaticity | 0.1 |
| Instability index | 61.28125 |
| Isoelectric point | 9.24969482422 |
| Runs | 13 |
| Runs residual | 0.0236842105263 |
| Runs probability | 0.020266873208 |
| Amino acid sequence | MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI QMHFEIVTIYSEQDLHFLKV |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEELEELLLLLLELLLLLLHHHHHHHHLLEEEEE EEEEEEEEEELLLEEEEEEL |
| PRMN | - |
| PiMo | - |
