Difference between revisions of "ENST00000508799.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>CGCCATCTTTGCTGTTTGGAAAACGGCCATTCCAGCCTGCGAGCTTTGGAGAGACCAAGCCCCCTGAGGCAGAGGCCGCGCCTCAGCATGTTACAGCTGTTTTGTTGAGGTGTGGTGAGGTTGCTTCTTTAAATGCGACCCTGATACATTCCTCCTCCCTGGGCAGGTCCTTCCCTCTGGAGCCTCCAGCCACCCCTGCCTGTGTTCTGTTGCGGAAAGACTTCTAATTTCTCCTTGGGGCAGAGTGCCTGCGGAGTGGGGCGGGCCGCCGCCTTGGCTGTTTGTGAAGCGGCATCGTTGTCTGGGGTATGATTTAATACACTTTACCGACCTGAATTCATTGGATATATGTAAAAATGAAGGAATGCACGTTATTCTGCTTGATGCTCTGCAGAGAGGAGCTGCCTGAGAGGTTGCACCTGCAGTCCTGGATGCACTGGCCCCAGGGGTGGTTGGTGCTGACTCCACATTTGTCTAATAAGATGTCCAGATACAAAAATGTCTGTGATGTGGGAACCGTTACAGATCTAGGAGAGTTTTTTCAACAGCAAAAAAAGCAAAGCCTGTTTCTGTCAAAGTCTTTTATTTTATTTTTGAATTTGACCTTTTAAAATAAGATTAAAACATTCCATCAAGACTCCCTTTA</dnaseq>| | sequence = <dnaseq>CGCCATCTTTGCTGTTTGGAAAACGGCCATTCCAGCCTGCGAGCTTTGGAGAGACCAAGCCCCCTGAGGCAGAGGCCGCGCCTCAGCATGTTACAGCTGTTTTGTTGAGGTGTGGTGAGGTTGCTTCTTTAAATGCGACCCTGATACATTCCTCCTCCCTGGGCAGGTCCTTCCCTCTGGAGCCTCCAGCCACCCCTGCCTGTGTTCTGTTGCGGAAAGACTTCTAATTTCTCCTTGGGGCAGAGTGCCTGCGGAGTGGGGCGGGCCGCCGCCTTGGCTGTTTGTGAAGCGGCATCGTTGTCTGGGGTATGATTTAATACACTTTACCGACCTGAATTCATTGGATATATGTAAAAATGAAGGAATGCACGTTATTCTGCTTGATGCTCTGCAGAGAGGAGCTGCCTGAGAGGTTGCACCTGCAGTCCTGGATGCACTGGCCCCAGGGGTGGTTGGTGCTGACTCCACATTTGTCTAATAAGATGTCCAGATACAAAAATGTCTGTGATGTGGGAACCGTTACAGATCTAGGAGAGTTTTTTCAACAGCAAAAAAAGCAAAGCCTGTTTCTGTCAAAGTCTTTTATTTTATTTTTGAATTTGACCTTTTAAAATAAGATTAAAACATTCCATCAAGACTCCCTTTA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-TRIML2-7]] | + | [[Category:Intergenic]][[Category:lnc-TRIML2-7]][[Category:NONHSAG039588]] |
Revision as of 14:08, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000508799.1 |
Source |
Gencode19 |
Same with |
lnc-TRIML2-7:1,NONHSAT099767 |
Classification |
intergenic |
Length |
646 nt |
Genomic location |
chr4-:189911869..189923229 |
Exon number |
2 |
Exons |
189911869..189912208,189922924..189923229 |
Genome context |
|
Sequence |
000001 CGCCATCTTT GCTGTTTGGA AAACGGCCAT TCCAGCCTGC GAGCTTTGGA GAGACCAAGC CCCCTGAGGC AGAGGCCGCG 000080
000081 CCTCAGCATG TTACAGCTGT TTTGTTGAGG TGTGGTGAGG TTGCTTCTTT AAATGCGACC CTGATACATT CCTCCTCCCT 000160 000161 GGGCAGGTCC TTCCCTCTGG AGCCTCCAGC CACCCCTGCC TGTGTTCTGT TGCGGAAAGA CTTCTAATTT CTCCTTGGGG 000240 000241 CAGAGTGCCT GCGGAGTGGG GCGGGCCGCC GCCTTGGCTG TTTGTGAAGC GGCATCGTTG TCTGGGGTAT GATTTAATAC 000320 000321 ACTTTACCGA CCTGAATTCA TTGGATATAT GTAAAAATGA AGGAATGCAC GTTATTCTGC TTGATGCTCT GCAGAGAGGA 000400 000401 GCTGCCTGAG AGGTTGCACC TGCAGTCCTG GATGCACTGG CCCCAGGGGT GGTTGGTGCT GACTCCACAT TTGTCTAATA 000480 000481 AGATGTCCAG ATACAAAAAT GTCTGTGATG TGGGAACCGT TACAGATCTA GGAGAGTTTT TTCAACAGCA AAAAAAGCAA 000560 000561 AGCCTGTTTC TGTCAAAGTC TTTTATTTTA TTTTTGAATT TGACCTTTTA AAATAAGATT AAAACATTCC ATCAAGACTC 000640 000641 CCTTTA |
Predicted Small Protein
Name | ENST00000508799.1_smProtein_356:610 |
Length | 85 |
Molecular weight | 10040.7554 |
Aromaticity | 0.130952380952 |
Instability index | 81.2488095238 |
Isoelectric point | 8.43695068359 |
Runs | 15 |
Runs residual | 0.0445859872611 |
Runs probability | 0.0248778189955 |
Amino acid sequence | MKECTLFCLMLCREELPERLHLQSWMHWPQGWLVLTPHLSNKMSRYKNVCDVGTVTDLGE FFQQQKKQSLFLSKSFILFLNLTF |
Secondary structure | LLLHHHHHHHHHHHHLHHHHHHHHHHHLLLLEEEELLLLLLLLLLLLLEELLLEELLHHH HHHHHHHHHHHLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |