Difference between revisions of "ENST00000475953.1"
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sequence = <dnaseq>TCCCGTTGTTATGGAGGTAGGCTCTCTAGGAATCTGGGAGTAGTAGCTGGGGGGCAAGAGCAAATAAAGAGCTCGAGCTTCTGTGGTCTCTGGGGAGATGTTCCCGGGAAGCCTGTCTAGAGGGCGGAGGGCAGCTGTTGAGATGGCGTGGCTCCCCGGCTCCTGCGCCCGCGTGGCTTTCGCGGCGGGCGCTGCGGCCCGGTATTGGACAGCCTGGCAGGGCAGCGCGGGGCCGAATCCGGCTGCCGTGGCTGAGGCTCATGGATCACTCTTTTGTGGTAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAAAA</dnaseq>| | sequence = <dnaseq>TCCCGTTGTTATGGAGGTAGGCTCTCTAGGAATCTGGGAGTAGTAGCTGGGGGGCAAGAGCAAATAAAGAGCTCGAGCTTCTGTGGTCTCTGGGGAGATGTTCCCGGGAAGCCTGTCTAGAGGGCGGAGGGCAGCTGTTGAGATGGCGTGGCTCCCCGGCTCCTGCGCCCGCGTGGCTTTCGCGGCGGGCGCTGCGGCCCGGTATTGGACAGCCTGGCAGGGCAGCGCGGGGCCGAATCCGGCTGCCGTGGCTGAGGCTCATGGATCACTCTTTTGTGGTAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:ENSG00000175061.13]] | + | [[Category:Intergenic]][[Category:ENSG00000175061.13]][[Category:lnc-TRPV2-1]] |
Revision as of 14:14, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000475953.1 |
Source |
Gencode19 |
Same with |
lnc-TRPV2-1:18 |
Classification |
intergenic |
Length |
1201 nt |
Genomic location |
chr17+:16342359..16345342 |
Exon number |
5 |
Exons |
16342359..16342728,16342974..16343017,16343499..16343567,16344388..16344444,16344682..16345342 |
Genome context |
|
Sequence |
000001 TCCCGTTGTT ATGGAGGTAG GCTCTCTAGG AATCTGGGAG TAGTAGCTGG GGGGCAAGAG CAAATAAAGA GCTCGAGCTT 000080
000081 CTGTGGTCTC TGGGGAGATG TTCCCGGGAA GCCTGTCTAG AGGGCGGAGG GCAGCTGTTG AGATGGCGTG GCTCCCCGGC 000160 000161 TCCTGCGCCC GCGTGGCTTT CGCGGCGGGC GCTGCGGCCC GGTATTGGAC AGCCTGGCAG GGCAGCGCGG GGCCGAATCC 000240 000241 GGCTGCCGTG GCTGAGGCTC ATGGATCACT CTTTTGTGGT AGGGCCACAT CTGCCAGAGC CTGGAGTCTG CGAAGGCCGG 000320 000321 GACCCGGTTC CCCGGCCCAC AGTGGGGGTG TGCAAACCCG AGAGAACTGG ATTGCGTACC CACTGCAGAG TGCTGAAGAC 000400 000401 GGGGTAGCCA CGAGGTTGCA AATTCGTGAA GAATCAGCAT CATGTTTGGC AGCTGAGTAT TGGAGCCAGG AGCCTGCCAT 000480 000481 GAGGTTTTGA GAACAGAGTG CTGTTTTAGA GCTGGCAGCA GCATCTCAGC CCAAGAGAAG GTTATATTCC CAGAGGATGT 000560 000561 CAGTCCCAAG GACCAGTAGC TGCCATCAGT TTGGATTCTG AAAACTAACT GGCATCAACA CTGGGTGTAG AAACATGCTT 000640 000641 GCCTTATGTA TCAGAGGACA TGCTCAGCAG ATCCAAGAGA TATATTTGGC AACTTTTTCT AGAAAAGGCA CATTGGGTAT 000720 000721 CATTCATTAC ATTCTTGAGT TTTTTTGGGT TTTTTTTTTT TTTTTTGAGA CAGTCTTGCT GTATTGCCCA GGCTGGAGTG 000800 000801 TGGTGGCACA ATCACAGCTC ATTGCATCCT CAATCACCCA GGCCTAAGCA ATCCTCCCAC CTTGTAGCTG GGACTACAGC 000880 000881 TCACAGCACA CCTGGCTAAA ATTTTTTTTT TGTTGAGACG GATTCTCTAT GTTGCCCAGG CTGGTCTCAG GCTCCTGGGC 000960 000961 TCAGATGGTC CTCCTGCCTC AGCTTCCAAA GGCACAGGCC AAGTTGTAGC TTTGTCCCTT GCCATCATGC CCAACAAGAG 001040 001041 GTTCTATACC TTTTAATGAA TTGACTTTCA TAAATTGGTT ATGTTGGTGG GCAAAGTTCT TTAAGCTGGA AATTGTAAAT 001120 001121 TCCTCCTGAA ATGTTTTTTC ATGCAGTTAC CATGAACTAA TACTACAATA AAGGATGGTC TTGGGTGTCA ATTCTTGAAA 001200 001201 A |
Predicted Small Protein
Name | ENST00000475953.1_smProtein_659:898 |
Length | 80 |
Molecular weight | 9214.4964 |
Aromaticity | 0.189873417722 |
Instability index | 66.6151898734 |
Isoelectric point | 10.4531860352 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0156091920798 |
Amino acid sequence | MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP RPKQSSHLVAGTTAHSTPG |
Secondary structure | LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL LLLLLLEEEELLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooo |