Difference between revisions of "ENST00000505877.1"

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sequence = <dnaseq>CTCCACACCGCCTTGCAAGCTGAGGGAGCCGGCTCCGGCCTCTGCCAGCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGACTCCTCAAGTGCCACCAAAGTGGGAGCCCAGGCAGAGGAGGCGCCGAGAGCGAGCGAGGGCTGCCTGCCAGCACGCTGTCACGTCTCAGCAATAGACTGCTCTTGAGGCTGGAGTGCAATGTTGTTATCATAGCTCACTGCAACCTGGAACCCCTAGTCTCAAGAGATCCTCCAGCCTCAGCCTCCCTGGGATGGCTATTTTTGTTACTTCTGAATTCTACTACAAAAGAGTGCTGCAATAAAAATCTTTGAACAAGTTCTAATGCCGTTCAACTGGAATTGAAGTTTTCAATCGTTGGATATGTCAAAATTTAATCAGATTGTATATTGCTCAATTACTTTCAAATTATGTACACCAAGTCATTCTTGCTCTGGCAAAATAAGAATATTTTCATTAATATATCATTCAACTTGAAATTGCCCAGCTTTTCCTTCTCATTTCCCCCCAGTCAAATGAGTTGAATTAATACTGTCTAAAAATATATATTCATTTGCTTACCTGTTAGTATTTGTTCCATGTATTAAGAAGCTTTGCTAGTATATGAAAATATATGTATTACCATGTCTTGTGAATTAGTACTTTTATCATTTTGAAATGTTTGTTTTCATTTCTGCTGACCGTTCTAACCTGGGTATCTATTTTGACTGGTTTTTAATGTAACTACTAACATCTTTTTATGTTCAGCACTTTTTCACAATTTTACTTTCAATGTCTTTATTTTTAAAATGTATCTTCTGTAGACAGTGTACAGGTGGTCTTGTTTTATTGTAAATCAAGTGACAATCTCTATTTCATAATTGACATATTTAATCCATATATATTTAATTTAATTGTTGTTATTTTGAGACTTAATATCCAGTTTTACTATTTTGGCCCATTTATTTTTGGTTTATTTTAGATGTCTTGCCTTATCTTAGATTGATTGATATTTTTAGTATTTAATTACATTTCTTTTATAAATGTAATTTCTTGAATATTTGTTTTTATTTTAGCAATTGCTCTGGGAATATAAAAATCATCTTTAAAATCTATTTAGAGTTAATGGTACTACTTTATGCAGTAGGTAAAAACATTTCACTAGCACAATTTCATTTGCAGGCACCTAACCTTCTGTGATAGTATTGTCTTATATTGTTATATTTATGAGATACAATCACTACAGTAAAATACTATTTTCTATTCATTGTGCCATCTTATAAATAAACAGATGAATAAACAGATATTTTTGA</dnaseq>|
 
sequence = <dnaseq>CTCCACACCGCCTTGCAAGCTGAGGGAGCCGGCTCCGGCCTCTGCCAGCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGACTCCTCAAGTGCCACCAAAGTGGGAGCCCAGGCAGAGGAGGCGCCGAGAGCGAGCGAGGGCTGCCTGCCAGCACGCTGTCACGTCTCAGCAATAGACTGCTCTTGAGGCTGGAGTGCAATGTTGTTATCATAGCTCACTGCAACCTGGAACCCCTAGTCTCAAGAGATCCTCCAGCCTCAGCCTCCCTGGGATGGCTATTTTTGTTACTTCTGAATTCTACTACAAAAGAGTGCTGCAATAAAAATCTTTGAACAAGTTCTAATGCCGTTCAACTGGAATTGAAGTTTTCAATCGTTGGATATGTCAAAATTTAATCAGATTGTATATTGCTCAATTACTTTCAAATTATGTACACCAAGTCATTCTTGCTCTGGCAAAATAAGAATATTTTCATTAATATATCATTCAACTTGAAATTGCCCAGCTTTTCCTTCTCATTTCCCCCCAGTCAAATGAGTTGAATTAATACTGTCTAAAAATATATATTCATTTGCTTACCTGTTAGTATTTGTTCCATGTATTAAGAAGCTTTGCTAGTATATGAAAATATATGTATTACCATGTCTTGTGAATTAGTACTTTTATCATTTTGAAATGTTTGTTTTCATTTCTGCTGACCGTTCTAACCTGGGTATCTATTTTGACTGGTTTTTAATGTAACTACTAACATCTTTTTATGTTCAGCACTTTTTCACAATTTTACTTTCAATGTCTTTATTTTTAAAATGTATCTTCTGTAGACAGTGTACAGGTGGTCTTGTTTTATTGTAAATCAAGTGACAATCTCTATTTCATAATTGACATATTTAATCCATATATATTTAATTTAATTGTTGTTATTTTGAGACTTAATATCCAGTTTTACTATTTTGGCCCATTTATTTTTGGTTTATTTTAGATGTCTTGCCTTATCTTAGATTGATTGATATTTTTAGTATTTAATTACATTTCTTTTATAAATGTAATTTCTTGAATATTTGTTTTTATTTTAGCAATTGCTCTGGGAATATAAAAATCATCTTTAAAATCTATTTAGAGTTAATGGTACTACTTTATGCAGTAGGTAAAAACATTTCACTAGCACAATTTCATTTGCAGGCACCTAACCTTCTGTGATAGTATTGTCTTATATTGTTATATTTATGAGATACAATCACTACAGTAAAATACTATTTTCTATTCATTGTGCCATCTTATAAATAAACAGATGAATAAACAGATATTTTTGA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-TRIO-4]]
+
[[Category:Intergenic]][[Category:lnc-TRIO-4]][[Category:NONHSAG039927]]

Revision as of 14:14, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000505877.1

Source

Gencode19

Same with

lnc-TRIO-4:3,NONHSAT100515

Classification

intergenic

Length

1319 nt

Genomic location

chr5+:12574969..12655799

Exon number

3

Exons

12574969..12575164,12595809..12595890,12654759..12655799

Genome context

Sequence
000001 CTCCACACCG CCTTGCAAGC TGAGGGAGCC GGCTCCGGCC TCTGCCAGCC CAGGAAGGGG CTCCCACAGT GCAGCGGCGG 000080
000081 GCTGAAGGAC TCCTCAAGTG CCACCAAAGT GGGAGCCCAG GCAGAGGAGG CGCCGAGAGC GAGCGAGGGC TGCCTGCCAG 000160
000161 CACGCTGTCA CGTCTCAGCA ATAGACTGCT CTTGAGGCTG GAGTGCAATG TTGTTATCAT AGCTCACTGC AACCTGGAAC 000240
000241 CCCTAGTCTC AAGAGATCCT CCAGCCTCAG CCTCCCTGGG ATGGCTATTT TTGTTACTTC TGAATTCTAC TACAAAAGAG 000320
000321 TGCTGCAATA AAAATCTTTG AACAAGTTCT AATGCCGTTC AACTGGAATT GAAGTTTTCA ATCGTTGGAT ATGTCAAAAT 000400
000401 TTAATCAGAT TGTATATTGC TCAATTACTT TCAAATTATG TACACCAAGT CATTCTTGCT CTGGCAAAAT AAGAATATTT 000480
000481 TCATTAATAT ATCATTCAAC TTGAAATTGC CCAGCTTTTC CTTCTCATTT CCCCCCAGTC AAATGAGTTG AATTAATACT 000560
000561 GTCTAAAAAT ATATATTCAT TTGCTTACCT GTTAGTATTT GTTCCATGTA TTAAGAAGCT TTGCTAGTAT ATGAAAATAT 000640
000641 ATGTATTACC ATGTCTTGTG AATTAGTACT TTTATCATTT TGAAATGTTT GTTTTCATTT CTGCTGACCG TTCTAACCTG 000720
000721 GGTATCTATT TTGACTGGTT TTTAATGTAA CTACTAACAT CTTTTTATGT TCAGCACTTT TTCACAATTT TACTTTCAAT 000800
000801 GTCTTTATTT TTAAAATGTA TCTTCTGTAG ACAGTGTACA GGTGGTCTTG TTTTATTGTA AATCAAGTGA CAATCTCTAT 000880
000881 TTCATAATTG ACATATTTAA TCCATATATA TTTAATTTAA TTGTTGTTAT TTTGAGACTT AATATCCAGT TTTACTATTT 000960
000961 TGGCCCATTT ATTTTTGGTT TATTTTAGAT GTCTTGCCTT ATCTTAGATT GATTGATATT TTTAGTATTT AATTACATTT 001040
001041 CTTTTATAAA TGTAATTTCT TGAATATTTG TTTTTATTTT AGCAATTGCT CTGGGAATAT AAAAATCATC TTTAAAATCT 001120
001121 ATTTAGAGTT AATGGTACTA CTTTATGCAG TAGGTAAAAA CATTTCACTA GCACAATTTC ATTTGCAGGC ACCTAACCTT 001200
001201 CTGTGATAGT ATTGTCTTAT ATTGTTATAT TTATGAGATA CAATCACTAC AGTAAAATAC TATTTTCTAT TCATTGTGCC 001280
001281 ATCTTATAAA TAAACAGATG AATAAACAGA TATTTTTGA
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