Difference between revisions of "ENST00000592687.1"
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sequence = <dnaseq>ACTTTCTTCAGGGCTATCAGATGAAGGCAGCAACGAAAACACCACCACAAGACCAACTTCAGGCTGGAGCTGATGATGCCACACAGCGAGAAAAAAGGGGCTTCCTGGAGCTCCTGCAACCCCAGGCATTAGTTCCGGTGCAGTTCTAGGATCAGATCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATACCACCTACTGCCAGACCTCAACGCCTCACAAAACTCTCACCCACCTACTGCTTTTAGCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCC</dnaseq>| | sequence = <dnaseq>ACTTTCTTCAGGGCTATCAGATGAAGGCAGCAACGAAAACACCACCACAAGACCAACTTCAGGCTGGAGCTGATGATGCCACACAGCGAGAAAAAAGGGGCTTCCTGGAGCTCCTGCAACCCCAGGCATTAGTTCCGGTGCAGTTCTAGGATCAGATCAATTCACTCGACAACAAGAGAAACAAATGGAGATTCCTACACAAAGACTTTCAAGCACAAAGAAATCCTGCTGCCTGTAAAGCGGAGCTGCCTCAGCCCTTGATGAACGACAGAAAATACCACCTACTGCCAGACCTCAACGCCTCACAAAACTCTCACCCACCTACTGCTTTTAGCTCACATTCCAGGAATTCAGATGAAGTGAAGTGCTCTCATGGGGACCAGGCATGGTTATGCCAGTCCACTGCCCTGCAAGCCTCAAGGGAAGCCAACTGCCCTTCAGCAAGTCACACCTGCCTTGGTGGAGGCCTTGATTGGAAGTGCCACACGCTACATGTCCAGTCCTGAGCGGGAGAATCGGTGTAGGGACGTTCTGGGGATGCCAGCTGTGGCCAGATCAGGTCCAACTACAGAAGAATAATGAAGACTCCACCTGAGGGCTGGAAAAACAAAACCTCAAGTGTGAGGCAGCCAACCTGTTACCTCGAGGGACTGTTCCGCAGCACAGCGGGGCCATGGGAACAGCAGCAGACACCCCGACCTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]] | + | [[Category:Intergenic]][[Category:ENSG00000235779.3]][[Category:NONHSAG026762]][[Category:Transcripts]] |
Revision as of 10:32, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000592687.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT068533 |
| Classification |
intergenic |
| Length |
703 nt |
| Genomic location |
chr2-:308981..314328 |
| Exon number |
4 |
| Exons |
308981..309407,310215..310393,313874..313884,314243..314328 |
| Genome context |
|
| Sequence |
000001 ACTTTCTTCA GGGCTATCAG ATGAAGGCAG CAACGAAAAC ACCACCACAA GACCAACTTC AGGCTGGAGC TGATGATGCC 000080
000081 ACACAGCGAG AAAAAAGGGG CTTCCTGGAG CTCCTGCAAC CCCAGGCATT AGTTCCGGTG CAGTTCTAGG ATCAGATCAA 000160 000161 TTCACTCGAC AACAAGAGAA ACAAATGGAG ATTCCTACAC AAAGACTTTC AAGCACAAAG AAATCCTGCT GCCTGTAAAG 000240 000241 CGGAGCTGCC TCAGCCCTTG ATGAACGACA GAAAATACCA CCTACTGCCA GACCTCAACG CCTCACAAAA CTCTCACCCA 000320 000321 CCTACTGCTT TTAGCTCACA TTCCAGGAAT TCAGATGAAG TGAAGTGCTC TCATGGGGAC CAGGCATGGT TATGCCAGTC 000400 000401 CACTGCCCTG CAAGCCTCAA GGGAAGCCAA CTGCCCTTCA GCAAGTCACA CCTGCCTTGG TGGAGGCCTT GATTGGAAGT 000480 000481 GCCACACGCT ACATGTCCAG TCCTGAGCGG GAGAATCGGT GTAGGGACGT TCTGGGGATG CCAGCTGTGG CCAGATCAGG 000560 000561 TCCAACTACA GAAGAATAAT GAAGACTCCA CCTGAGGGCT GGAAAAACAA AACCTCAAGT GTGAGGCAGC CAACCTGTTA 000640 000641 CCTCGAGGGA CTGTTCCGCA GCACAGCGGG GCCATGGGAA CAGCAGCAGA CACCCCGACC TCC |
Predicted Small Protein
| Name | ENST00000592687.1_smProtein_260:505 |
| Length | 82 |
| Molecular weight | 8872.643 |
| Aromaticity | 0.0493827160494 |
| Instability index | 50.7913580247 |
| Isoelectric point | 6.62518310547 |
| Runs | 9 |
| Runs residual | 0.03106859619 |
| Runs probability | 0.0297454317062 |
| Amino acid sequence | MNDRKYHLLPDLNASQNSHPPTAFSSHSRNSDEVKCSHGDQAWLCQSTALQASREANCPS ASHTCLGGGLDWKCHTLHVQS |
| Secondary structure | LLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLEEEEEEEEEL |
| PRMN | - |
| PiMo | - |
