Difference between revisions of "ENST00000546959.1"
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sequence = <dnaseq>TGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGAATGAAACATATATGGAAATGTTCTGTGCAATCAAAACAGCAGTGGTAACAGAGGAGATGTAGGCTCTGAGTGTCTCACTGGAGACTGAAGTCCACAGATATGCAACAAAGCCTTTGTCTCCCTGATGTTTTTGCCTCCTGCTGGTCATGTGCTTTCACACATCAAGAGAGGACATTTAACATTTGA</dnaseq>| | sequence = <dnaseq>TGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGAATGAAACATATATGGAAATGTTCTGTGCAATCAAAACAGCAGTGGTAACAGAGGAGATGTAGGCTCTGAGTGTCTCACTGGAGACTGAAGTCCACAGATATGCAACAAAGCCTTTGTCTCCCTGATGTTTTTGCCTCCTGCTGGTCATGTGCTTTCACACATCAAGAGAGGACATTTAACATTTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-POTEM-2]] | + | [[Category:Intergenic]][[Category:lnc-POTEM-2]][[Category:NONHSAG014338]] |
Revision as of 14:55, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000546959.1 |
| Source |
Gencode19 |
| Same with |
lnc-POTEM-2:14,NONHSAT035518 |
| Classification |
intergenic |
| Length |
413 nt |
| Genomic location |
chr14-:19918476..19919581 |
| Exon number |
3 |
| Exons |
19918476..19918662,19919138..19919273,19919492..19919581 |
| Genome context |
|
| Sequence |
000001 TGAAATTTCA TTCTGATTTT CTGGCTGAAG ACTATTCTCT TTGTGTATGT CCACCACAGT TACTTTATCC CTTCATCTGT 000080
000081 GGATGGGCAG TCTCGCTGTA TTGCCCAGGC TGGAGTGCAG TGGCATGATC TCAGCTCACT GCAAGCTCTG CTTCCTGGGT 000160 000161 TCACGCCATT CTCCTGCCTC AGCCTCCTGA GTAGCTGGGA TTACAGGCAC CCGCCACCAC GCCCAGAATG AAACATATAT 000240 000241 GGAAATGTTC TGTGCAATCA AAACAGCAGT GGTAACAGAG GAGATGTAGG CTCTGAGTGT CTCACTGGAG ACTGAAGTCC 000320 000321 ACAGATATGC AACAAAGCCT TTGTCTCCCT GATGTTTTTG CCTCCTGCTG GTCATGTGCT TTCACACATC AAGAGAGGAC 000400 000401 ATTTAACATT TGA |
Predicted Small Protein
| Name | ENST00000546959.1_smProtein_326:412 |
| Length | 29 |
| Molecular weight | 3263.7024 |
| Aromaticity | 0.142857142857 |
| Instability index | 99.3071428571 |
| Isoelectric point | 5.30194091797 |
| Runs | 7 |
| Runs residual | 0.0467806841046 |
| Runs probability | 0.0406288641583 |
| Amino acid sequence | MQQSLCLPDVFASCWSCAFTHQERTFNI |
| Secondary structure | LLLEELLLHHHHHHHHHLLLHHHHHLLL |
| PRMN | - |
| PiMo | - |
