Difference between revisions of "ENST00000539299.1"
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sequence = <dnaseq>TTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCGGACAATAATGTTTTGAGCTGTTGCTGAGTCTGGCTTTTGTGACGGGAACTTTTAGCACTCAAGGAGTGGCCTTGTCTCTGGCCTGTCCCCGAGTGCTCATGGGCAGCCAAGGCCTGGGGACTGCTCAGGCAGGGTAGATGTATTTGCCAGGCCAGCTCCCGTCCCTGGGACCTCAGGGAGTAGCTTCATCCCTGAAGGCTGAGTGTCTTCTGCCTCATGTGGGTGGCCCCTCTGCAGGGTTCTCAGGCATCCAGGGAAGTGGGTGCCACAGCGTTGCCTCCAGCCTCACTGGGGCTGGCTGGACTTTGCTCTGACAACACAGCAGTGGCTGGGCCCCTGCAACTCTCCAGGGCTCAGTTTCCCTGTTGGCCGCACTATGGCATAGGCCCCTGTGTGGACACCGATGAGCTGACCCCACAAATGCCACCCGGCCGCTCCCCCAGGCTTCAGTGGCCTAACAGCTGTTGTGTCAGGAACCAGCTTAAAGAATCTTTCTTGCTTTCTCAAACTCTCCAGGAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGAGCTACCTCCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTTTTAGCTACAGATCCAGCCCCCCTCCATCACCACAACAGTCGAGTCCAAATCAAACGCGCTCCAGGCAGGTGGGGCTGGGGTTCTGCCAGCCTCCTGGCCAGCAGGGGTGGGTGGGCAGACTGGGGCCAGTATCAGCTGTTCTGCCTGGACCCAGGCCGGGCTGGGAAGGCACACTTGTGCTTATTTCCCGCCTCCACTTCTGTGCAAGCTTGTGCTGTCATAAGCAGAGATCACAGCCCCATTTCTTGGATGGAGAAAGTGGACACTGAGGTCTGAGGCTTTTGAGGACAGTCAGGAGCCCTCCTATGGGCTCCAGTGATGCACTCACCAGCTTCTGGTCCTCTTCTTCCACCTCTTAGAGTGCCTTGGCTCCCTCCTGTCGTCCTGGGGAACCTCGGCCCCAGCCCTGCCTCCCCAGCCAGTCACAGCTCCTCCCTGGTCACCCTGAGGGAGCTCAGGGCCCGGCTGGTAGCTGGGTTGCTCTGCTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTGCCTGGCCTCCCCTCTCATGGCCCAGCCACCCCAGAACCTGAAGAGGTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTCCCTGCCTGCCCTCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAAGGCTGGAGCACAACTGCCTCTCAATAAACGTGTTGC</dnaseq>| | sequence = <dnaseq>TTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCGGACAATAATGTTTTGAGCTGTTGCTGAGTCTGGCTTTTGTGACGGGAACTTTTAGCACTCAAGGAGTGGCCTTGTCTCTGGCCTGTCCCCGAGTGCTCATGGGCAGCCAAGGCCTGGGGACTGCTCAGGCAGGGTAGATGTATTTGCCAGGCCAGCTCCCGTCCCTGGGACCTCAGGGAGTAGCTTCATCCCTGAAGGCTGAGTGTCTTCTGCCTCATGTGGGTGGCCCCTCTGCAGGGTTCTCAGGCATCCAGGGAAGTGGGTGCCACAGCGTTGCCTCCAGCCTCACTGGGGCTGGCTGGACTTTGCTCTGACAACACAGCAGTGGCTGGGCCCCTGCAACTCTCCAGGGCTCAGTTTCCCTGTTGGCCGCACTATGGCATAGGCCCCTGTGTGGACACCGATGAGCTGACCCCACAAATGCCACCCGGCCGCTCCCCCAGGCTTCAGTGGCCTAACAGCTGTTGTGTCAGGAACCAGCTTAAAGAATCTTTCTTGCTTTCTCAAACTCTCCAGGAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGAGCTACCTCCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTTTTAGCTACAGATCCAGCCCCCCTCCATCACCACAACAGTCGAGTCCAAATCAAACGCGCTCCAGGCAGGTGGGGCTGGGGTTCTGCCAGCCTCCTGGCCAGCAGGGGTGGGTGGGCAGACTGGGGCCAGTATCAGCTGTTCTGCCTGGACCCAGGCCGGGCTGGGAAGGCACACTTGTGCTTATTTCCCGCCTCCACTTCTGTGCAAGCTTGTGCTGTCATAAGCAGAGATCACAGCCCCATTTCTTGGATGGAGAAAGTGGACACTGAGGTCTGAGGCTTTTGAGGACAGTCAGGAGCCCTCCTATGGGCTCCAGTGATGCACTCACCAGCTTCTGGTCCTCTTCTTCCACCTCTTAGAGTGCCTTGGCTCCCTCCTGTCGTCCTGGGGAACCTCGGCCCCAGCCCTGCCTCCCCAGCCAGTCACAGCTCCTCCCTGGTCACCCTGAGGGAGCTCAGGGCCCGGCTGGTAGCTGGGTTGCTCTGCTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTGCCTGGCCTCCCCTCTCATGGCCCAGCCACCCCAGAACCTGAAGAGGTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTCCCTGCCTGCCCTCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAAGGCTGGAGCACAACTGCCTCTCAATAAACGTGTTGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-RHOF-1]][[Category:NONHSAG012555]][[Category:ENSG00000212694.4]] | + | [[Category:Intergenic]][[Category:lnc-RHOF-1]][[Category:NONHSAG012555]][[Category:ENSG00000212694.4]][[Category:Transcripts]] |
Latest revision as of 17:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000539299.1 |
Source |
Gencode19 |
Same with |
lnc-RHOF-1:16,NONHSAT031453 |
Classification |
intergenic |
Length |
1603 nt |
Genomic location |
chr12-:122233183..122234785 |
Exon number |
1 |
Exons |
122233183..122234785 |
Genome context |
|
Sequence |
000001 TTTAGTAGAG ACAGGGTTTC TCCATGTTGG TCAGGCTGGT CTCAAACTGA CCTCAGGTGA TCCGCCCACC TCGGCCTCCC 000080
000081 AAAGTGCTGG GATTACAGGC ATGAGCCACC GCGCCTGGCC GGACAATAAT GTTTTGAGCT GTTGCTGAGT CTGGCTTTTG 000160 000161 TGACGGGAAC TTTTAGCACT CAAGGAGTGG CCTTGTCTCT GGCCTGTCCC CGAGTGCTCA TGGGCAGCCA AGGCCTGGGG 000240 000241 ACTGCTCAGG CAGGGTAGAT GTATTTGCCA GGCCAGCTCC CGTCCCTGGG ACCTCAGGGA GTAGCTTCAT CCCTGAAGGC 000320 000321 TGAGTGTCTT CTGCCTCATG TGGGTGGCCC CTCTGCAGGG TTCTCAGGCA TCCAGGGAAG TGGGTGCCAC AGCGTTGCCT 000400 000401 CCAGCCTCAC TGGGGCTGGC TGGACTTTGC TCTGACAACA CAGCAGTGGC TGGGCCCCTG CAACTCTCCA GGGCTCAGTT 000480 000481 TCCCTGTTGG CCGCACTATG GCATAGGCCC CTGTGTGGAC ACCGATGAGC TGACCCCACA AATGCCACCC GGCCGCTCCC 000560 000561 CCAGGCTTCA GTGGCCTAAC AGCTGTTGTG TCAGGAACCA GCTTAAAGAA TCTTTCTTGC TTTCTCAAAC TCTCCAGGAA 000640 000641 TTCCTGGTGA CTGGAAGGGG GAGTGACTCA GGCCCTCAAC CTCTAGCAGG TAAGGGAGCT ACCTCCTGGG TGGGCATGCC 000720 000721 CAGTTCCTCA GTGGGCCCAG CGCGGCCCAG CCTCCGAGGA AGCTCTGAGC AGCTGGCTTG GCTCCGAGGT ATTTTTAGCT 000800 000801 ACAGATCCAG CCCCCCTCCA TCACCACAAC AGTCGAGTCC AAATCAAACG CGCTCCAGGC AGGTGGGGCT GGGGTTCTGC 000880 000881 CAGCCTCCTG GCCAGCAGGG GTGGGTGGGC AGACTGGGGC CAGTATCAGC TGTTCTGCCT GGACCCAGGC CGGGCTGGGA 000960 000961 AGGCACACTT GTGCTTATTT CCCGCCTCCA CTTCTGTGCA AGCTTGTGCT GTCATAAGCA GAGATCACAG CCCCATTTCT 001040 001041 TGGATGGAGA AAGTGGACAC TGAGGTCTGA GGCTTTTGAG GACAGTCAGG AGCCCTCCTA TGGGCTCCAG TGATGCACTC 001120 001121 ACCAGCTTCT GGTCCTCTTC TTCCACCTCT TAGAGTGCCT TGGCTCCCTC CTGTCGTCCT GGGGAACCTC GGCCCCAGCC 001200 001201 CTGCCTCCCC AGCCAGTCAC AGCTCCTCCC TGGTCACCCT GAGGGAGCTC AGGGCCCGGC TGGTAGCTGG GTTGCTCTGC 001280 001281 TTCTGTCCCC CACTCCTGTG GAGCCTGGCA GGCAACTCCA TGATCTGACC CCGGTTACCT TGACAGCCCT GCCTGGCCTC 001360 001361 CCCTCTCATG GCCCAGCCAC CCCAGAACCT GAAGAGGTTT TCTAGCTGCC GTGCATTTGC CAGGCTGGGT TACCCACCCT 001440 001441 ACTTTCCCTG CCTGCCCTCC AGTGCTGCCA GGCCTAGTGT GCCAGCCAGC GCTCAGCCTT CAGTAAAGGG TTCCCCTGCT 001520 001521 TCCAACCTCC ATTGCACTGC TTCCCCTAAG ACTGTGACCT CCTGGAAGGC TGGAGCACAA CTGCCTCTCA ATAAACGTGT 001600 001601 TGC |
Predicted Small Protein
Name | ENST00000539299.1_smProtein_1112:1327 |
Length | 72 |
Molecular weight | 7417.7871 |
Aromaticity | 0.0422535211268 |
Instability index | 83.6887323944 |
Isoelectric point | 10.3460083008 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0450828980241 |
Amino acid sequence | MHSPASGPLLPPLRVPWLPPVVLGNLGPSPASPASHSSSLVTLRELRARLVAGLLCFCPP LLWSLAGNSMI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLH HHHHHHLLLLL |
PRMN | - |
PiMo | - |