Difference between revisions of "ENST00000573602.1"
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sequence = <dnaseq>TTAAGAAAGGCAATGAATCATGTGCCACAAGAATCTTGAGAGAACCCACGAGCTTGGGAGCTGGTGACAGACCCCCATTCGGAGCGCTCTCTGCACAGCTACACAGCGACCCCGCCCCCGCCTGCCCATCAGGACGGCTCTGCAGCTGCAAAGGGCGAGTGCTTGGTTCCCAAGGCAGGGCCCAGCTCCATGGTTCTCCTCGCCTCACTCTCCTCCGTGAGCCTCAGGGACCCGGTGGCCACAGCACCCTCAGTTCTCCCCAGAGTTGCTGTTCCCACCTCTGGCTGTGAGGTAGGTGGCATGGCAGAGGGGGCTGGCCTGGGATGTGGGATCCTGCTGTGAGCGGCACCAGTGGGGTTTGTCATGCTGACACTGATGACAGAGGTGAACTCATGGTCCCCCGGCCCTGGGGAGCAGAGACCCCCTTCCAGGCAGCAGGGCAGGGTAGGTGCATCCAGCACCCTCCATGGTCGCAGCCCTCCACCAGGTGGCAGGTCACGCCATGCCTTCTCTGTCCTCACAGTGGTGTGGCGGGGCTGGGTGTGTAACTCTCGTCCTGTGTTCCGTGGACACTGTGCCTGGGTCACACAACAGCGGATGGAGCCTCAGAGCCCCAGGAGCCCTGTGGCTGCTCCTGCTCCTGGGACGGCAGGGCCAGCGCAGGGACTGTGGAGCTCAGGAGGAGGGACCCTCTAGCTCATTATGTAGAGGAGGCGGCAGTCAGGCGGACGGGGTGGGCACCGGAGGGAGGATGGGATGGGCAGGGAAGCCGCCGCAACAGCTGCAGTGAGGTTCTTTCCCAAGGTGGAGGAGGGGGAAGGACAGGCAGGGCCCATGTGGTTGGGCTCTTCCTCCTCCAGCTCAGGAGCCACCGACAGGACATGGCCTCAGCTGGGTGGCACCAGGTGACCAGGCCCAGCTCAGGGTCTGCTCTCCTCTGATGGTCCAGGCGGGTACCGTGCAGCCCTGGGACTTGACATCGGCTGAGCTGTGGCAAAGAGCTGTGTTCTTCCCAGCTCCCAAGCCCTGTGGCACCCGCAGTTGTGAAGTCCTCAGGTGACCTCGGACAGTGTCCATTGGGTGCTTCCCTGGTGCCAGTGCTGTTCTGGAAGCTTCTGTGGTCTTGTTTGGTGCTCACAGCACTCATGCCTGCAGTAACTGTCCCCACATTAAAGTGAGGGACAGGCTGGGGCTTGGAGGTGCCATGGTGGCGCCAGTGTCCCAGGGCCACCAAGCAAACCACCGTGGGCCCGGCAGCCTGAGCGGCAGGCCTGTATTCCCTCTCCACCCGCCCTGTCTGGAGGCTGGACTTGGAGACAGAGGGGCCTCTTGGCTATCTTCTTCCGGGACCACTCTCCCTGGCAGGAGCCCGCCTGGCACAGCTGCGTGAGTGCCGGGCGTCCTTGCCTGAAACAAACTGCAATTCAGCGCAGGATTCCAGGATTCCATGGCAACGTGCCCTGTGTTCCGGCCCCGGCTGGGGCTTGGGAGCAGCTGCTGTGTCATGGGGGATCCACTTGTTTACCGACAGCCCCAAGGACCCGGACATGGTGCCAGCTTCCCATGCCTTGGCCCTGAGATCTGGGAGGCCCATCGCGGCCGGTGCTTCCCCCAACCCCACTGAGCATCTCCTTCCCGCCCTGTGTCCACCCACCTCCTGCCCAAGACCCCTGAGTGTTCGTGGGCTCTACCTGGTGGGATGCTCTTTGGCTTGTAGACAGGGGTTGGTTGGCAGCATAGTGTTCCCTATCGATGTCCACATCCTAGTGGGAGCCTGTGACTACCTGGCTCGGGGGATCCAGGTTGCAGATGAAATAAGGTTGGATCAGCTGACTTTAAACTAGGGTGGTGACCCTGGAGCATCCCGGGGGGCCCAGTGTAATCACAAGGTCCTTAAAAGTGGAGGAGGGGCCAGCGTGGGGCTCACGCCTGCAATCCCAGAGCTTTGGGAAGCCGAGGCAGCAGGATCCCCTGAATCCAGGAGTTCGAAGCCAGCCTGGGCAACAAAGTGAGACCGAGTCTTCAAAGCCAGCCTGAGCCACATAGTGAGACTGAGTCCTGTCTCTACAAAAAGTAAACAAAAATCAGCCG</dnaseq>| | sequence = <dnaseq>TTAAGAAAGGCAATGAATCATGTGCCACAAGAATCTTGAGAGAACCCACGAGCTTGGGAGCTGGTGACAGACCCCCATTCGGAGCGCTCTCTGCACAGCTACACAGCGACCCCGCCCCCGCCTGCCCATCAGGACGGCTCTGCAGCTGCAAAGGGCGAGTGCTTGGTTCCCAAGGCAGGGCCCAGCTCCATGGTTCTCCTCGCCTCACTCTCCTCCGTGAGCCTCAGGGACCCGGTGGCCACAGCACCCTCAGTTCTCCCCAGAGTTGCTGTTCCCACCTCTGGCTGTGAGGTAGGTGGCATGGCAGAGGGGGCTGGCCTGGGATGTGGGATCCTGCTGTGAGCGGCACCAGTGGGGTTTGTCATGCTGACACTGATGACAGAGGTGAACTCATGGTCCCCCGGCCCTGGGGAGCAGAGACCCCCTTCCAGGCAGCAGGGCAGGGTAGGTGCATCCAGCACCCTCCATGGTCGCAGCCCTCCACCAGGTGGCAGGTCACGCCATGCCTTCTCTGTCCTCACAGTGGTGTGGCGGGGCTGGGTGTGTAACTCTCGTCCTGTGTTCCGTGGACACTGTGCCTGGGTCACACAACAGCGGATGGAGCCTCAGAGCCCCAGGAGCCCTGTGGCTGCTCCTGCTCCTGGGACGGCAGGGCCAGCGCAGGGACTGTGGAGCTCAGGAGGAGGGACCCTCTAGCTCATTATGTAGAGGAGGCGGCAGTCAGGCGGACGGGGTGGGCACCGGAGGGAGGATGGGATGGGCAGGGAAGCCGCCGCAACAGCTGCAGTGAGGTTCTTTCCCAAGGTGGAGGAGGGGGAAGGACAGGCAGGGCCCATGTGGTTGGGCTCTTCCTCCTCCAGCTCAGGAGCCACCGACAGGACATGGCCTCAGCTGGGTGGCACCAGGTGACCAGGCCCAGCTCAGGGTCTGCTCTCCTCTGATGGTCCAGGCGGGTACCGTGCAGCCCTGGGACTTGACATCGGCTGAGCTGTGGCAAAGAGCTGTGTTCTTCCCAGCTCCCAAGCCCTGTGGCACCCGCAGTTGTGAAGTCCTCAGGTGACCTCGGACAGTGTCCATTGGGTGCTTCCCTGGTGCCAGTGCTGTTCTGGAAGCTTCTGTGGTCTTGTTTGGTGCTCACAGCACTCATGCCTGCAGTAACTGTCCCCACATTAAAGTGAGGGACAGGCTGGGGCTTGGAGGTGCCATGGTGGCGCCAGTGTCCCAGGGCCACCAAGCAAACCACCGTGGGCCCGGCAGCCTGAGCGGCAGGCCTGTATTCCCTCTCCACCCGCCCTGTCTGGAGGCTGGACTTGGAGACAGAGGGGCCTCTTGGCTATCTTCTTCCGGGACCACTCTCCCTGGCAGGAGCCCGCCTGGCACAGCTGCGTGAGTGCCGGGCGTCCTTGCCTGAAACAAACTGCAATTCAGCGCAGGATTCCAGGATTCCATGGCAACGTGCCCTGTGTTCCGGCCCCGGCTGGGGCTTGGGAGCAGCTGCTGTGTCATGGGGGATCCACTTGTTTACCGACAGCCCCAAGGACCCGGACATGGTGCCAGCTTCCCATGCCTTGGCCCTGAGATCTGGGAGGCCCATCGCGGCCGGTGCTTCCCCCAACCCCACTGAGCATCTCCTTCCCGCCCTGTGTCCACCCACCTCCTGCCCAAGACCCCTGAGTGTTCGTGGGCTCTACCTGGTGGGATGCTCTTTGGCTTGTAGACAGGGGTTGGTTGGCAGCATAGTGTTCCCTATCGATGTCCACATCCTAGTGGGAGCCTGTGACTACCTGGCTCGGGGGATCCAGGTTGCAGATGAAATAAGGTTGGATCAGCTGACTTTAAACTAGGGTGGTGACCCTGGAGCATCCCGGGGGGCCCAGTGTAATCACAAGGTCCTTAAAAGTGGAGGAGGGGCCAGCGTGGGGCTCACGCCTGCAATCCCAGAGCTTTGGGAAGCCGAGGCAGCAGGATCCCCTGAATCCAGGAGTTCGAAGCCAGCCTGGGCAACAAAGTGAGACCGAGTCTTCAAAGCCAGCCTGAGCCACATAGTGAGACTGAGTCCTGTCTCTACAAAAAGTAAACAAAAATCAGCCG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-AC127496.3-5]][[Category:NONHSAG022966]][[Category:ENSG00000261924.1]] | + | [[Category:Intergenic]][[Category:lnc-AC127496.3-5]][[Category:NONHSAG022966]][[Category:ENSG00000261924.1]][[Category:Transcripts]] |
Revision as of 10:46, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000573602.1 |
| Source |
Gencode19 |
| Same with |
lnc-AC127496.3-5:2,NONHSAT056415 |
| Classification |
intergenic |
| Length |
2091 nt |
| Genomic location |
chr17-:78942020..78944878 |
| Exon number |
2 |
| Exons |
78942020..78942745,78943514..78944878 |
| Genome context |
|
| Sequence |
000001 TTAAGAAAGG CAATGAATCA TGTGCCACAA GAATCTTGAG AGAACCCACG AGCTTGGGAG CTGGTGACAG ACCCCCATTC 000080
000081 GGAGCGCTCT CTGCACAGCT ACACAGCGAC CCCGCCCCCG CCTGCCCATC AGGACGGCTC TGCAGCTGCA AAGGGCGAGT 000160 000161 GCTTGGTTCC CAAGGCAGGG CCCAGCTCCA TGGTTCTCCT CGCCTCACTC TCCTCCGTGA GCCTCAGGGA CCCGGTGGCC 000240 000241 ACAGCACCCT CAGTTCTCCC CAGAGTTGCT GTTCCCACCT CTGGCTGTGA GGTAGGTGGC ATGGCAGAGG GGGCTGGCCT 000320 000321 GGGATGTGGG ATCCTGCTGT GAGCGGCACC AGTGGGGTTT GTCATGCTGA CACTGATGAC AGAGGTGAAC TCATGGTCCC 000400 000401 CCGGCCCTGG GGAGCAGAGA CCCCCTTCCA GGCAGCAGGG CAGGGTAGGT GCATCCAGCA CCCTCCATGG TCGCAGCCCT 000480 000481 CCACCAGGTG GCAGGTCACG CCATGCCTTC TCTGTCCTCA CAGTGGTGTG GCGGGGCTGG GTGTGTAACT CTCGTCCTGT 000560 000561 GTTCCGTGGA CACTGTGCCT GGGTCACACA ACAGCGGATG GAGCCTCAGA GCCCCAGGAG CCCTGTGGCT GCTCCTGCTC 000640 000641 CTGGGACGGC AGGGCCAGCG CAGGGACTGT GGAGCTCAGG AGGAGGGACC CTCTAGCTCA TTATGTAGAG GAGGCGGCAG 000720 000721 TCAGGCGGAC GGGGTGGGCA CCGGAGGGAG GATGGGATGG GCAGGGAAGC CGCCGCAACA GCTGCAGTGA GGTTCTTTCC 000800 000801 CAAGGTGGAG GAGGGGGAAG GACAGGCAGG GCCCATGTGG TTGGGCTCTT CCTCCTCCAG CTCAGGAGCC ACCGACAGGA 000880 000881 CATGGCCTCA GCTGGGTGGC ACCAGGTGAC CAGGCCCAGC TCAGGGTCTG CTCTCCTCTG ATGGTCCAGG CGGGTACCGT 000960 000961 GCAGCCCTGG GACTTGACAT CGGCTGAGCT GTGGCAAAGA GCTGTGTTCT TCCCAGCTCC CAAGCCCTGT GGCACCCGCA 001040 001041 GTTGTGAAGT CCTCAGGTGA CCTCGGACAG TGTCCATTGG GTGCTTCCCT GGTGCCAGTG CTGTTCTGGA AGCTTCTGTG 001120 001121 GTCTTGTTTG GTGCTCACAG CACTCATGCC TGCAGTAACT GTCCCCACAT TAAAGTGAGG GACAGGCTGG GGCTTGGAGG 001200 001201 TGCCATGGTG GCGCCAGTGT CCCAGGGCCA CCAAGCAAAC CACCGTGGGC CCGGCAGCCT GAGCGGCAGG CCTGTATTCC 001280 001281 CTCTCCACCC GCCCTGTCTG GAGGCTGGAC TTGGAGACAG AGGGGCCTCT TGGCTATCTT CTTCCGGGAC CACTCTCCCT 001360 001361 GGCAGGAGCC CGCCTGGCAC AGCTGCGTGA GTGCCGGGCG TCCTTGCCTG AAACAAACTG CAATTCAGCG CAGGATTCCA 001440 001441 GGATTCCATG GCAACGTGCC CTGTGTTCCG GCCCCGGCTG GGGCTTGGGA GCAGCTGCTG TGTCATGGGG GATCCACTTG 001520 001521 TTTACCGACA GCCCCAAGGA CCCGGACATG GTGCCAGCTT CCCATGCCTT GGCCCTGAGA TCTGGGAGGC CCATCGCGGC 001600 001601 CGGTGCTTCC CCCAACCCCA CTGAGCATCT CCTTCCCGCC CTGTGTCCAC CCACCTCCTG CCCAAGACCC CTGAGTGTTC 001680 001681 GTGGGCTCTA CCTGGTGGGA TGCTCTTTGG CTTGTAGACA GGGGTTGGTT GGCAGCATAG TGTTCCCTAT CGATGTCCAC 001760 001761 ATCCTAGTGG GAGCCTGTGA CTACCTGGCT CGGGGGATCC AGGTTGCAGA TGAAATAAGG TTGGATCAGC TGACTTTAAA 001840 001841 CTAGGGTGGT GACCCTGGAG CATCCCGGGG GGCCCAGTGT AATCACAAGG TCCTTAAAAG TGGAGGAGGG GCCAGCGTGG 001920 001921 GGCTCACGCC TGCAATCCCA GAGCTTTGGG AAGCCGAGGC AGCAGGATCC CCTGAATCCA GGAGTTCGAA GCCAGCCTGG 002000 002001 GCAACAAAGT GAGACCGAGT CTTCAAAGCC AGCCTGAGCC ACATAGTGAG ACTGAGTCCT GTCTCTACAA AAAGTAAACA 002080 002081 AAAATCAGCC G |
Predicted Small Protein
| Name | ENST00000573602.1_smProtein_1547:1843 |
| Length | 99 |
| Molecular weight | 10265.9639 |
| Aromaticity | 0.030612244898 |
| Instability index | 55.8224489796 |
| Isoelectric point | 7.67535400391 |
| Runs | 17 |
| Runs residual | 0.0344268548541 |
| Runs probability | 0.0488689381423 |
| Amino acid sequence | MVPASHALALRSGRPIAAGASPNPTEHLLPALCPPTSCPRPLSVRGLYLVGCSLACRQGL VGSIVFPIDVHILVGACDYLARGIQVADEIRLDQLTLN |
| Secondary structure | LLLHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLHHHHLLL LEEEEEEELEEEEELHHHHHHHLLLHHHHHHHHHLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
| PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooT TTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii |
