Difference between revisions of "ENST00000416509.1"
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sequence = <dnaseq>AGACTGGGAAGTCCAAGATCAAGGTGCTGGCAGATTCAGTGTCTGATTCTCCTGGTCTCATCTGTCCTTGCCGCCAAGATGGATTATCTGCAGGAACTTGGACCAACTTCACGGAACCTTCCTTATGTTCTGTTCATACTGCCCAGACCTGCCCTGGCTTCCCTGTTGCTCCTGAGGCAGAAGAGGCCTTTGGACTTACTCGGCCCCACATCTGTACAGTCCAGAGATGCTGGGGGAATTAACACCACAAAAGGTTGACTTTAGATCAATGTGAGACAAGTATTTCAACTATGATTGTGTATTTGTCAGTGCCTCTTTGTAATTCTGTGAGTTTTTTCCTTCATTTATTTGATAACATACTGTATAATAATGCACATTTTAAATTCTCATGTCTTCCTGGTTAACATTTTTATTTAGTCCTAATGTCGTGGGCTTCTTTGCTGGGGATTATGGTGTCAGCATCCTTTTAGGGATCATTTTTCTGCCTACCACAACTATGATTAACTTTTTGCCAACAATTTTGAGAATATAGGTGAAGTGTGTATTTTCTTGGGAAAAATCTGGTTGCTTATTTTAATTGGTAATACAGTAACACTTCCTTTTTGTTGATTCTTGATCTGGGATGTAAACATTTCTTCTTTCAGTGTTCAAATTTTCTTGTCATTTCAT</dnaseq>| | sequence = <dnaseq>AGACTGGGAAGTCCAAGATCAAGGTGCTGGCAGATTCAGTGTCTGATTCTCCTGGTCTCATCTGTCCTTGCCGCCAAGATGGATTATCTGCAGGAACTTGGACCAACTTCACGGAACCTTCCTTATGTTCTGTTCATACTGCCCAGACCTGCCCTGGCTTCCCTGTTGCTCCTGAGGCAGAAGAGGCCTTTGGACTTACTCGGCCCCACATCTGTACAGTCCAGAGATGCTGGGGGAATTAACACCACAAAAGGTTGACTTTAGATCAATGTGAGACAAGTATTTCAACTATGATTGTGTATTTGTCAGTGCCTCTTTGTAATTCTGTGAGTTTTTTCCTTCATTTATTTGATAACATACTGTATAATAATGCACATTTTAAATTCTCATGTCTTCCTGGTTAACATTTTTATTTAGTCCTAATGTCGTGGGCTTCTTTGCTGGGGATTATGGTGTCAGCATCCTTTTAGGGATCATTTTTCTGCCTACCACAACTATGATTAACTTTTTGCCAACAATTTTGAGAATATAGGTGAAGTGTGTATTTTCTTGGGAAAAATCTGGTTGCTTATTTTAATTGGTAATACAGTAACACTTCCTTTTTGTTGATTCTTGATCTGGGATGTAAACATTTCTTCTTTCAGTGTTCAAATTTTCTTGTCATTTCAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-COL6A3-4]][[Category:NONHSAG030897]][[Category:ENSG00000224844.1]] | + | [[Category:Intergenic]][[Category:lnc-COL6A3-4]][[Category:NONHSAG030897]][[Category:ENSG00000224844.1]][[Category:Transcripts]] |
Revision as of 11:15, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000416509.1 |
Source |
Gencode19 |
Same with |
lnc-COL6A3-4:1,NONHSAT077624 |
Classification |
intergenic |
Length |
669 nt |
Genomic location |
chr2-:238031553..238032740 |
Exon number |
2 |
Exons |
238031553..238032176,238032696..238032740 |
Genome context |
|
Sequence |
000001 AGACTGGGAA GTCCAAGATC AAGGTGCTGG CAGATTCAGT GTCTGATTCT CCTGGTCTCA TCTGTCCTTG CCGCCAAGAT 000080
000081 GGATTATCTG CAGGAACTTG GACCAACTTC ACGGAACCTT CCTTATGTTC TGTTCATACT GCCCAGACCT GCCCTGGCTT 000160 000161 CCCTGTTGCT CCTGAGGCAG AAGAGGCCTT TGGACTTACT CGGCCCCACA TCTGTACAGT CCAGAGATGC TGGGGGAATT 000240 000241 AACACCACAA AAGGTTGACT TTAGATCAAT GTGAGACAAG TATTTCAACT ATGATTGTGT ATTTGTCAGT GCCTCTTTGT 000320 000321 AATTCTGTGA GTTTTTTCCT TCATTTATTT GATAACATAC TGTATAATAA TGCACATTTT AAATTCTCAT GTCTTCCTGG 000400 000401 TTAACATTTT TATTTAGTCC TAATGTCGTG GGCTTCTTTG CTGGGGATTA TGGTGTCAGC ATCCTTTTAG GGATCATTTT 000480 000481 TCTGCCTACC ACAACTATGA TTAACTTTTT GCCAACAATT TTGAGAATAT AGGTGAAGTG TGTATTTTCT TGGGAAAAAT 000560 000561 CTGGTTGCTT ATTTTAATTG GTAATACAGT AACACTTCCT TTTTGTTGAT TCTTGATCTG GGATGTAAAC ATTTCTTCTT 000640 000641 TCAGTGTTCA AATTTTCTTG TCATTTCAT |
Predicted Small Protein
Name | ENST00000416509.1_smProtein_290:403 |
Length | 38 |
Molecular weight | 4264.9838 |
Aromaticity | 0.189189189189 |
Instability index | 41.0810810811 |
Isoelectric point | 6.68096923828 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0429252782195 |
Amino acid sequence | MIVYLSVPLCNSVSFFLHLFDNILYNNAHFKFSCLPG |
Secondary structure | LEEEEELLLLLHHHHHHHHHHHHHHHLLLEEEELLLL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |