Difference between revisions of "ENST00000546353.1"
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sequence = <dnaseq>AAGGCTGCTCCCCCAGGCCGCCCCCAGATGGTGGAGTCTCTCCCAGCCCGAAGATTCGGAGCCAGCGCCCAGACCCGAGCCTCACTCACTGCTCACTCCCGGGGTGCAGGGCAGAGGTGCCAGTGTTGCAAGCAAATGACACGGTTACCCCCGAATCAGCCACTGTGGAGTTTTGCTCTTTTTGCCCAGGCTGCAATGGCGTGATCTTGGCTCACCGCAACCTCCGCCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGATAAATGTTTCAGAATGCTGCCACCAACCATCCTGCAACCATGAGTGGCAAGCCCAAGACCAAAAACCAAATATTGAGGATGGCAAAGAAAAAAGAAAGAGACTGGACTGTTGGGGACATCACTGAGCCACTTTGCCAAACCTGGAGTTGCCTACCTTCAAAAGTTTTGTTATATGACATAATTAATCTTTACTGCTTTGCCACTTCTGGTGGAATATTTTATTACTATCACCAGAAGCATTTCTTGGCTTCAATAACACACATACTCCAGTGTCACCTGCTTCAAGAGCACTCTACTCATAATTCTGACTAATGTACATTTCCACATGTCTGACCCAAAGGAGGAAGAGGCAGAGCAAGACGGCTCAATAGAAGCCTCCACTAATTGTCCTCCCCACTGGAACACCAAATTGAACAACTATCCACACAAAGAAGCACCTTCGTAA</dnaseq>| | sequence = <dnaseq>AAGGCTGCTCCCCCAGGCCGCCCCCAGATGGTGGAGTCTCTCCCAGCCCGAAGATTCGGAGCCAGCGCCCAGACCCGAGCCTCACTCACTGCTCACTCCCGGGGTGCAGGGCAGAGGTGCCAGTGTTGCAAGCAAATGACACGGTTACCCCCGAATCAGCCACTGTGGAGTTTTGCTCTTTTTGCCCAGGCTGCAATGGCGTGATCTTGGCTCACCGCAACCTCCGCCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAATTACAGATAAATGTTTCAGAATGCTGCCACCAACCATCCTGCAACCATGAGTGGCAAGCCCAAGACCAAAAACCAAATATTGAGGATGGCAAAGAAAAAAGAAAGAGACTGGACTGTTGGGGACATCACTGAGCCACTTTGCCAAACCTGGAGTTGCCTACCTTCAAAAGTTTTGTTATATGACATAATTAATCTTTACTGCTTTGCCACTTCTGGTGGAATATTTTATTACTATCACCAGAAGCATTTCTTGGCTTCAATAACACACATACTCCAGTGTCACCTGCTTCAAGAGCACTCTACTCATAATTCTGACTAATGTACATTTCCACATGTCTGACCCAAAGGAGGAAGAGGCAGAGCAAGACGGCTCAATAGAAGCCTCCACTAATTGTCCTCCCCACTGGAACACCAAATTGAACAACTATCCACACAAAGAAGCACCTTCGTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-LRMP-2]][[Category:NONHSAG010698]][[Category:ENSG00000255921.1]] | + | [[Category:Antisense]][[Category:lnc-LRMP-2]][[Category:NONHSAG010698]][[Category:ENSG00000255921.1]][[Category:Transcripts]] |
Revision as of 09:58, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000546353.1 |
| Source |
Gencode19 |
| Same with |
lnc-LRMP-2:1,NONHSAT027335 |
| Classification |
antisense |
| Length |
728 nt |
| Genomic location |
chr12+:25102097..25113092 |
| Exon number |
4 |
| Exons |
25102097..25102264,25110061..25110174,25110868..25111208,25112988..25113092 |
| Genome context |
|
| Sequence |
000001 AAGGCTGCTC CCCCAGGCCG CCCCCAGATG GTGGAGTCTC TCCCAGCCCG AAGATTCGGA GCCAGCGCCC AGACCCGAGC 000080
000081 CTCACTCACT GCTCACTCCC GGGGTGCAGG GCAGAGGTGC CAGTGTTGCA AGCAAATGAC ACGGTTACCC CCGAATCAGC 000160 000161 CACTGTGGAG TTTTGCTCTT TTTGCCCAGG CTGCAATGGC GTGATCTTGG CTCACCGCAA CCTCCGCCTC CCGGATTCAA 000240 000241 GCGATTCTCC TGCCTCAGCC TCCCAAGTAG CTGGAATTAC AGATAAATGT TTCAGAATGC TGCCACCAAC CATCCTGCAA 000320 000321 CCATGAGTGG CAAGCCCAAG ACCAAAAACC AAATATTGAG GATGGCAAAG AAAAAAGAAA GAGACTGGAC TGTTGGGGAC 000400 000401 ATCACTGAGC CACTTTGCCA AACCTGGAGT TGCCTACCTT CAAAAGTTTT GTTATATGAC ATAATTAATC TTTACTGCTT 000480 000481 TGCCACTTCT GGTGGAATAT TTTATTACTA TCACCAGAAG CATTTCTTGG CTTCAATAAC ACACATACTC CAGTGTCACC 000560 000561 TGCTTCAAGA GCACTCTACT CATAATTCTG ACTAATGTAC ATTTCCACAT GTCTGACCCA AAGGAGGAAG AGGCAGAGCA 000640 000641 AGACGGCTCA ATAGAAGCCT CCACTAATTG TCCTCCCCAC TGGAACACCA AATTGAACAA CTATCCACAC AAAGAAGCAC 000720 000721 CTTCGTAA |
Predicted Small Protein
| Name | ENST00000546353.1_smProtein_608:727 |
| Length | 40 |
| Molecular weight | 4382.6244 |
| Aromaticity | 0.0512820512821 |
| Instability index | 81.341025641 |
| Isoelectric point | 4.58331298828 |
| Runs | 5 |
| Runs residual | 0.0405354449472 |
| Runs probability | 0.0343402225756 |
| Amino acid sequence | MSDPKEEEAEQDGSIEASTNCPPHWNTKLNNYPHKEAPS |
| Secondary structure | LLLHHHHHHLLLLLEEELLLLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
