Difference between revisions of "ENST00000417926.1"

Revision as of 09:53, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000417926.1
Source	Gencode19
Same with	lnc-LIMS3.1-1:1,NONHSAT073155
Classification	intergenic
Length	2918 nt
Genomic location	chr2+:110693919..110726154
Exon number	5
Exons	110693919..110695649,110704941..110705422,110721046..110721127,110722265..110722379,110725647..110726154
Genome context
Sequence	000001 AGGAAACACA TTTCTACTGT TTAAGCCACT TGGCTGGGAG TACTTGGTTA TGGCAGCCTG AGCAGACTAA ACCAGCACCT 000080 000081 CAAAGAGTTG TTATAGGGTA TGCTTAGTGG TAACTGGTTC CTAAAGGCCT TGCTTTCTAA GGCTGACTCC TCACCCTGCA 000160 000161 AGGATGCATT CTCCCCACTG GCAGATATGC AACCAGGAAC AGGCATTAAC ACGCTTTATT CCCAGAGTTT TAATATTTTC 000240 000241 CATTGCATAA AATATTTGTT CATGAAAATG ACAAAATTGC TATTAGATTC TATCACCACA TCTCTGTTGA TTTTACTTTC 000320 000321 TGCAAACACA TACAAGTAAT GTAGGCATAC AGTTAAAAAT GAAACCTTAT CCTGTAGTTC CAGCTACTAG GGAGGCTGAA 000400 000401 GCAAGAGAAT GGCATGAACC TGGGAGGCGG AGCTTGTCGT GAGCCCAGAT CAGGCCACTA CACTCCAGCC GGGGCAACAG 000480 000481 AGCGCAACTC CGTCTCAAAA CAAACAAACA AAACAAAACA AAAAAAACTT ATAGACAAGT ACAAAATGAG AAGAAAAAGT 000560 000561 CCCTTTCCCT TCATGCCTCT ACTTCCTGCT GTATTCTCAA AGGTAAGCAC TGATTACAGT TTACTTATGG ATCTTTCCAG 000640 000641 GAAAATATTT TATGCATTTA TCAGAAAATG TAAGTATATG CATCCTTTAA AATTCTGCAT AAATCAAACT CTGCAGGGTA 000720 000721 CTATCTTCCC ATCCTCATTT GATATTTTGT AGATCTTTTC CTATTGGCTG TACAGATCAC CTCATTCTGT CTCCTGGGTC 000800 000801 ATACAATATA GCTCACATAA TTCTAAGTCT GAAGGTTGGT CCAAATGGTT CCAAGAATGC AGGTACCAAA AAGTAGTCTC 000880 000881 TTGAAGAGGC CATCAGAGAC CTGGCTGTTT GTATCTTCCT CCTCTGCCAT CCACAGTGTC ATCTTCACCC AAGGTGGCTG 000960 000961 GAGAAGCTGT TAGGAATATG TGGTTTTTTA AAAATTACAT TCATAGGAAA AGGGGAGGGA AGAGAAGAAG AAAACCTCTC 001040 001041 CCCCTAAGCT CATGGCTCTT TTTAGTCAGG CTGAGCCAAC TAAAGTCATG TACTTCCCTT AGATAGGTAA CTGTTGCCAG 001120 001121 GAAAATGCCC TGTGTGGATT GGCCTGGACT AAGCAGGATC CTCCTCTAAA GAGAGAGATG AGATGAATGC CTGACCCAAG 001200 001201 TCTGGGATCT TGGGTGGGAA GCGTGTGGAT AGTAGGTCAG AGGTCAGCAG TGTCTGTGGT GTAGGATGTA ATCCCATCTC 001280 001281 CACAGAGCTG CATACAAGTG TGTTTAAGTG TGTGCAAGTG ATTAACTTTG ATTAGTAGTT TCAACTCTTT ACAATGAACA 001360 001361 TATTTATCTT TTTTAAAAAA TAAAGCCATT TTAAAAGATC TTGCCATAAA ACAATCATTC CTTAAGTCAC CACTTAGGAT 001440 001441 AGACCTAGAA TATTTGTCCT TTCTCAAGAG CACCAGAGAG TTTTCTGGTA ATCCACGCAA TAAACAGTTA TAAAAGGTAA 001520 001521 TTGTTGAGAT CAGGGGAAGA TGGCAGATAG GAGGCAGTGC TAATGTGTAG CTCCCACATG GATGGACAAA ACACCATGTG 001600 001601 GAGACTCACA CTGTGACCCT GTTGTGCTCC AAGAACTATC ATAGGAACAT ACTGGGAAAA CCAAAAGAAT TCACGGATCC 001680 001681 TTTGAAAGAA GACGCACACC ACTGTAAATT CTGTGGAACA GGAGAAAAAC TGTCTTGGAG GAAGGCATCC TTCTATTCTA 001760 001761 CTGATCAGAA AGCTGGACAA AGTCCCACTG CCAGGCTACA CAGTTGGTGC CATTTGCGGA GGTGACCTTT GACCTTTAAC 001840 001841 CCACGCGGCC ACCCGCCCGA GCTCTTACCC CTGCTGCCCC TCGCGCGTCC CACTCCCCGT CCCTGCCGGA TCCGCTTCCC 001920 001921 TGCGCTGGGC CCAGCGCGCC GCCAGGGAAG

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>AGGAAACACATTTCTACTGTTTAAGCCACTTGGCTGGGAGTACTTGGTTATGGCAGCCTGAGCAGACTAAACCAGCACCTCAAAGAGTTGTTATAGGGTATGCTTAGTGGTAACTGGTTCCTAAAGGCCTTGCTTTCTAAGGCTGACTCCTCACCCTGCAAGGATGCATTCTCCCCACTGGCAGATATGCAACCAGGAACAGGCATTAACACGCTTTATTCCCAGAGTTTTAATATTTTCCATTGCATAAAATATTTGTTCATGAAAATGACAAAATTGCTATTAGATTCTATCACCACATCTCTGTTGATTTTACTTTCTGCAAACACATACAAGTAATGTAGGCATACAGTTAAAAATGAAACCTTATCCTGTAGTTCCAGCTACTAGGGAGGCTGAAGCAAGAGAATGGCATGAACCTGGGAGGCGGAGCTTGTCGTGAGCCCAGATCAGGCCACTACACTCCAGCCGGGGCAACAGAGCGCAACTCCGTCTCAAAACAAACAAACAAAACAAAACAAAAAAAACTTATAGACAAGTACAAAATGAGAAGAAAAAGTCCCTTTCCCTTCATGCCTCTACTTCCTGCTGTATTCTCAAAGGTAAGCACTGATTACAGTTTACTTATGGATCTTTCCAGGAAAATATTTTATGCATTTATCAGAAAATGTAAGTATATGCATCCTTTAAAATTCTGCATAAATCAAACTCTGCAGGGTACTATCTTCCCATCCTCATTTGATATTTTGTAGATCTTTTCCTATTGGCTGTACAGATCACCTCATTCTGTCTCCTGGGTCATACAATATAGCTCACATAATTCTAAGTCTGAAGGTTGGTCCAAATGGTTCCAAGAATGCAGGTACCAAAAAGTAGTCTCTTGAAGAGGCCATCAGAGACCTGGCTGTTTGTATCTTCCTCCTCTGCCATCCACAGTGTCATCTTCACCCAAGGTGGCTGGAGAAGCTGTTAGGAATATGTGGTTTTTTAAAAATTACATTCATAGGAAAAGGGGAGGGAAGAGAAGAAGAAAACCTCTCCCCCTAAGCTCATGGCTCTTTTTAGTCAGGCTGAGCCAACTAAAGTCATGTACTTCCCTTAGATAGGTAACTGTTGCCAGGAAAATGCCCTGTGTGGATTGGCCTGGACTAAGCAGGATCCTCCTCTAAAGAGAGAGATGAGATGAATGCCTGACCCAAGTCTGGGATCTTGGGTGGGAAGCGTGTGGATAGTAGGTCAGAGGTCAGCAGTGTCTGTGGTGTAGGATGTAATCCCATCTCCACAGAGCTGCATACAAGTGTGTTTAAGTGTGTGCAAGTGATTAACTTTGATTAGTAGTTTCAACTCTTTACAATGAACATATTTATCTTTTTTAAAAAATAAAGCCATTTTAAAAGATCTTGCCATAAAACAATCATTCCTTAAGTCACCACTTAGGATAGACCTAGAATATTTGTCCTTTCTCAAGAGCACCAGAGAGTTTTCTGGTAATCCACGCAATAAACAGTTATAAAAGGTAATTGTTGAGATCAGGGGAAGATGGCAGATAGGAGGCAGTGCTAATGTGTAGCTCCCACATGGATGGACAAAACACCATGTGGAGACTCACACTGTGACCCTGTTGTGCTCCAAGAACTATCATAGGAACATACTGGGAAAACCAAAAGAATTCACGGATCCTTTGAAAGAAGACGCACACCACTGTAAATTCTGTGGAACAGGAGAAAAACTGTCTTGGAGGAAGGCATCCTTCTATTCTACTGATCAGAAAGCTGGACAAAGTCCCACTGCCAGGCTACACAGTTGGTGCCATTTGCGGAGGTGACCTTTGACCTTTAACCCACGCGGCCACCCGCCCGAGCTCTTACCCCTGCTGCCCCTCGCGCGTCCCACTCCCCGTCCCTGCCGGATCCGCTTCCCTGCGCTGGGCCCAGCGCGCCGCCAGGGAAGGGGCCGGAGCCTGGGAGCCCGCCCCGCCGTCGCCCGTCCTCCGCCCGCAGGCCCACCCGCAGCGGTCACGTGAAGGACCGAGCGCCGCGCGCCCAGGCGGGGCCTCCGGCCTGCACGAGGAGGGCAGAGTCCGTTGCGGCTGCCGCCCCGACGCCCGCGCATCCCCGCTCGCCGCGCCCGCCGCCGCGATGTCCGGGGCCGGCCTAGCCGCGGTGGTGAGCTGCCTGCGCCCGCAGCCCGGCGAGGAGCCGCAGACCCATGAGGACCTTCTCCTGGCAGCTGCCTATGTTTTGGATGCCCAGTACAACAGAAATGTTCCATTTGAAACTCACCTCAGGCCATCAGACGTTACTATTTTTATAACCACTAGACAACGCAGGTTGCCGCATACTTCTTTATTTGTGTAGACCTCGCTCTTGCCCTGTTTGAAGAGCCTGAGTTGCTTCCCCTGCCTTTCTTGGCCACCTCAATAGCAGAAGTACTCTGCCTGACTGCATACTTTGGCAGACTGGTACATTTTGCAAAAGTCACTCCTCAAATGGTTTTCTGGAAGGATACAAAAGACATCTGCACCATGGTAACCACAGTGGCGAGTGTTCATTGTAGTACCTGTAAGAGTTTATGACCGAAGGCAGGAGCCATGAAGAAAAAAGACTCAATAGATTTGCTTTTGATGAAACAACAACACTTCCATACAGTGAACGCCATAAGCACAACTGCAAGCAAACCGCAAACTGAAGAACAAATAGGGCAAAATGTGGCAGTGCAGACATTTCAGCATATCAAGAGCACTTCCAAATTACAGGAAAAAAAAGATATCTCAATAGATAATTTTGCTGAAGATAAGTGAAGGCAACTCATAAGGAAAAAATATGTAAAATGGCCGATAGGAAAGATGTTTAACGTCACTAATTAAAAATTATAGAATAAAACGACAATAAAATACCATGTGTTTGCCTATAAAACAA</dnaseq>|
 }}
-[[Category:Intergenic]][[Category:lnc-LIMS3.1-1]][[Category:NONHSAG028906]][[Category:ENSG00000186148.7]]
+[[Category:Intergenic]][[Category:lnc-LIMS3.1-1]][[Category:NONHSAG028906]][[Category:ENSG00000186148.7]][[Category:Transcripts]]