Difference between revisions of "NONHSAT068829"

Latest revision as of 23:10, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT068829
Source	NONCODE4.0
Same with	,
Classification	intergenic
Length	1959 nt
Genomic location	chr2+:6108654..6110612
Exon number	1
Exons	6108654..6110612
Genome context
Sequence	000001 gtgttgacaT GTTTTCAGCT ACTAACATTT TCTTTTTCTT CTTTTCTTCC CTTTTGATAA ACAGGAGAAA GAGCAAATGA 000080 000081 GAGGCAGTTG CACTTTTTCA GGTGTCAGGC TGGAGGAAGC CACTTGAAGA TGAATCTACC TCTGCCTTAG GATTGCCTGA 000160 000161 TGGCCTGTGC CATTCCATGT TATATCTACT GATTTGCTCC CTGTATTCAA AGATTTTTTT TTTTTACTTA ATTCTCTCTT 000240 000241 ACTGACCCTG AGAGTGACCA TATTTTTAAC CAATTTGGTC TTCAGCCTCA AAACTTAGCT CTTTCCTTTT GTGGTCCCCG 000320 000321 AATCCTATCA CGTGTCATGG TGGCTGTGAA GATGTTTGCC AAGCCTGCTG AGAAGGCTCA TCTGTGGCAT CCAAAAGCAG 000400 000401 AGATTTCAAC TCTGGACCCC TGTGACCTGC CTTTGTAATT ATGGATACCC AGCACTGTTT TGAAATATCA GTGGACATCC 000480 000481 AGTTTTTAAA AGCCCTCAGA GCTTTGGGAG ACACCCCTTT ATCTCTCTGG CATGTCAGAG AACCGATTCA ACCCTTCTCA 000560 000561 TCTCCTCCTC CTTCCCTCTC TTGGGCCATC AGGATGCGGC AGCAACTCAC TGTGCATGTT TTTACAGCTC TTCTCCAGTA 000640 000641 ATGCTGCCAT TTCCACTGCA GACCACAGGA TAAAAGGACC GCTTCACCGT GGCCCAGGAT ACCCTTTTAA GTAGGAGGTA 000720 000721 ACTATTCAGT TTCGTAGTGG CCCATACATA AACTTGATTA TGTTCTTCGT TGCTCCAATA TACTATTTGT GTGTTTTGTT 000800 000801 TTTTCCAGAG GGAGAAGAAA GTACTGCTTT GATCTAAAAT TAAGCAAACG TTCTTCAATA AACCCACCAT GAGACTTGAC 000880 000881 CACTAATGGT GACCAGCAGT GGCTTTGTCA TGGCCCTGCC CACTGGGGGC AGGCACATGC CGGGGCCAGG GCAGGCTGCC 000960 000961 AGCTGGTGAG CACGAATAGG TGGCTGGTGG AGCGCATGCA GTGGGAAGGG CAGATGGCTC CATTTTGATT TGTTAGCAGG 001040 001041 CCACTTCCTC GGAAGGGGCT TTCCCTTCAG TGGGGTCTGC ACCGCCAGCC TCAGCTGTCT TGGAGCAGAT GTGTATAGTT 001120 001121 AGAGATGGGG ACCTTTTCAC TGTAAATACT GCTCACATGT TCCTAGGCTG ACTTTACTAT GTGCAGAGCC TCTTCTCAAA 001200 001201 TATCCAAATC CCCTCTGTTG GGTACTACAG AACAGATGTT ACCCTGCCTC CTATTACATT AATTTACGAA CTTTACATAT 001280 001281 GCTGAGTTAC GGACCCTAAG CTGTTGCATG TGCTTGGCTC TTATGTTCCA AAAAGTACAT TTGTATGGTT TTGTGGAAAC 001360 001361 TGTGCTGTTC TGCTTTTGCA GTCTGTGAGA TTCTGATTTT TTTTTTCTCA TCAGCAATTA TCCTTGTCTT GGAACATCAG 001440 001441 AGCTTGAAGA AAGGGATTCT AGCAGCCCAC CTCTCTCCTT CCTAATCCAG ATGGTTAGAG GCTTAGAGAG AGGTGGTGGT 001520 001521 TGCTCTGAGT TTACCAGATT CAGTGACAAA CCCCTTCTAA TTTCTAATCA ATCTGGCAGC CTTCATTTAC CAAAAGTTGA 001600 001601 CTTTTGATAG TATAACTTTT ATACACCGTG AGACAACTTA TTTTAAAAAA CAGTTTAGAA ATATTTAATT TTTTTTTGAA 001680 001681 AGACTTTTTA Aggtcaggca ccatgggtca tgcctatcat ctcaacgctt tgaggactga agtgggagga tcatttgagg 001760 001761 ccaagatttc aagatcagct tgggcaacat agtgagactc tgtctctaaa aaattaaaaa aaaaaatagc caggtgtggt 001840 001841 ggcgcatgcc tgtagtccca gctacttcgg aggctgaagt gggaggatcc attgagccta agagatggcg attgagtaag 001920 001921 ccatgattgc accactgcac tccagcctgg acgacagag

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Predicted Small Protein

Name	`NONHSAT068829_smProtein_440:640`
Length	`67`
Molecular weight	`7599.7699`
Aromaticity	`0.0909090909091`
Instability index	`46.8984848485`
Isoelectric point	`6.81109619141`
Runs	`8`
Runs residual	`0.0293957539467`
Runs probability	`0.0469881646353`<

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>gtgttgacaTGTTTTCAGCTACTAACATTTTCTTTTTCTTCTTTTCTTCCCTTTTGATAAACAGGAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTACCTCTGCCTTAGGATTGCCTGATGGCCTGTGCCATTCCATGTTATATCTACTGATTTGCTCCCTGTATTCAAAGATTTTTTTTTTTTACTTAATTCTCTCTTACTGACCCTGAGAGTGACCATATTTTTAACCAATTTGGTCTTCAGCCTCAAAACTTAGCTCTTTCCTTTTGTGGTCCCCGAATCCTATCACGTGTCATGGTGGCTGTGAAGATGTTTGCCAAGCCTGCTGAGAAGGCTCATCTGTGGCATCCAAAAGCAGAGATTTCAACTCTGGACCCCTGTGACCTGCCTTTGTAATTATGGATACCCAGCACTGTTTTGAAATATCAGTGGACATCCAGTTTTTAAAAGCCCTCAGAGCTTTGGGAGACACCCCTTTATCTCTCTGGCATGTCAGAGAACCGATTCAACCCTTCTCATCTCCTCCTCCTTCCCTCTCTTGGGCCATCAGGATGCGGCAGCAACTCACTGTGCATGTTTTTACAGCTCTTCTCCAGTAATGCTGCCATTTCCACTGCAGACCACAGGATAAAAGGACCGCTTCACCGTGGCCCAGGATACCCTTTTAAGTAGGAGGTAACTATTCAGTTTCGTAGTGGCCCATACATAAACTTGATTATGTTCTTCGTTGCTCCAATATACTATTTGTGTGTTTTGTTTTTTCCAGAGGGAGAAGAAAGTACTGCTTTGATCTAAAATTAAGCAAACGTTCTTCAATAAACCCACCATGAGACTTGACCACTAATGGTGACCAGCAGTGGCTTTGTCATGGCCCTGCCCACTGGGGGCAGGCACATGCCGGGGCCAGGGCAGGCTGCCAGCTGGTGAGCACGAATAGGTGGCTGGTGGAGCGCATGCAGTGGGAAGGGCAGATGGCTCCATTTTGATTTGTTAGCAGGCCACTTCCTCGGAAGGGGCTTTCCCTTCAGTGGGGTCTGCACCGCCAGCCTCAGCTGTCTTGGAGCAGATGTGTATAGTTAGAGATGGGGACCTTTTCACTGTAAATACTGCTCACATGTTCCTAGGCTGACTTTACTATGTGCAGAGCCTCTTCTCAAATATCCAAATCCCCTCTGTTGGGTACTACAGAACAGATGTTACCCTGCCTCCTATTACATTAATTTACGAACTTTACATATGCTGAGTTACGGACCCTAAGCTGTTGCATGTGCTTGGCTCTTATGTTCCAAAAAGTACATTTGTATGGTTTTGTGGAAACTGTGCTGTTCTGCTTTTGCAGTCTGTGAGATTCTGATTTTTTTTTTCTCATCAGCAATTATCCTTGTCTTGGAACATCAGAGCTTGAAGAAAGGGATTCTAGCAGCCCACCTCTCTCCTTCCTAATCCAGATGGTTAGAGGCTTAGAGAGAGGTGGTGGTTGCTCTGAGTTTACCAGATTCAGTGACAAACCCCTTCTAATTTCTAATCAATCTGGCAGCCTTCATTTACCAAAAGTTGACTTTTGATAGTATAACTTTTATACACCGTGAGACAACTTATTTTAAAAAACAGTTTAGAAATATTTAATTTTTTTTTGAAAGACTTTTTAAggtcaggcaccatgggtcatgcctatcatctcaacgctttgaggactgaagtgggaggatcatttgaggccaagatttcaagatcagcttgggcaacatagtgagactctgtctctaaaaaattaaaaaaaaaaatagccaggtgtggtggcgcatgcctgtagtcccagctacttcggaggctgaagtgggaggatccattgagcctaagagatggcgattgagtaagccatgattgcaccactgcactccagcctggacgacagag</dnaseq>|
 }}
-[[Category:Intergenic]][[Category:NONHSAG026890]][[Category:Transcripts]]
+[[Category:Intergenic]][[Category:NONHSAG026890]][[Category:Transcripts]][[Category:Transcripts]]