Difference between revisions of "ENST00000414769.1"

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sequence = <dnaseq>GAAGGTAGAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGAATGTTTTTCTTGAAGGCATCCAGCATCTCCAGTTAGCAGTACTGATTTTTTTTCCCCCCAACAAAGGAACACTACATCAACACTGTTGGCGGGGACCTGGACACAGAAGACTCCTGTTTCAAGAAAATACAATCATCTCTCAAAGGCTGTAATTTATATGCATTTTAAAACTCTAGGCATTGAAAACCACCCAAGTGTCCCAAATAGAAGGGTAATATATAATCAATCACTCAGTGTAATATTATACATCCTTTAAAAATGTTATTGGGAAATGTTTTATGATCTGTAAGTCCAAGGAATCCTCTCCCACCATTTCTTTCCCCCCGCTGTTCCCCCATACCCACACTTCTTTGTTCCAATTGGCATGTAAATTTGGTTTTCCCGCCAAATGAGTCAGTCATGATGGGAACCTCAACTGATTTGAACAGATGTGTGTCAATGTTACTTGGAAAACTAGATGTCAATAACCAGGGTCACAGAAAAAGGCAGTGGTCACAACTCTGTAAAAATGTATGCATGCACACAGACAAGAACTAAAGTGGAACCCCACACAGG</dnaseq>|
 
sequence = <dnaseq>GAAGGTAGAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGAATGTTTTTCTTGAAGGCATCCAGCATCTCCAGTTAGCAGTACTGATTTTTTTTCCCCCCAACAAAGGAACACTACATCAACACTGTTGGCGGGGACCTGGACACAGAAGACTCCTGTTTCAAGAAAATACAATCATCTCTCAAAGGCTGTAATTTATATGCATTTTAAAACTCTAGGCATTGAAAACCACCCAAGTGTCCCAAATAGAAGGGTAATATATAATCAATCACTCAGTGTAATATTATACATCCTTTAAAAATGTTATTGGGAAATGTTTTATGATCTGTAAGTCCAAGGAATCCTCTCCCACCATTTCTTTCCCCCCGCTGTTCCCCCATACCCACACTTCTTTGTTCCAATTGGCATGTAAATTTGGTTTTCCCGCCAAATGAGTCAGTCATGATGGGAACCTCAACTGATTTGAACAGATGTGTGTCAATGTTACTTGGAAAACTAGATGTCAATAACCAGGGTCACAGAAAAAGGCAGTGGTCACAACTCTGTAAAAATGTATGCATGCACACAGACAAGAACTAAAGTGGAACCCCACACAGG</dnaseq>|
 
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[[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]][[Category:Transcripts]][[Category:Transcripts]]

Revision as of 14:52, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000414769.1

Source

Gencode19

Same with

lnc-PLAC1-1:2

Classification

intergenic

Length

720 nt

Genomic location

chrX-:133677473..133680660

Exon number

3

Exons

133677473..133678029,133678744..133678827,133680582..133680660

Genome context

Sequence
000001 GAAGGTAGAA GGTGGGGTCT GCCGGACGCG TGTTCCTGCC ACCAGGTGCC CGCTCCCCGC GAGGCCGGCT CAGGAGCAGA 000080
000081 AGGAAGCCCG GTGCCAGCCA GCCTTCCTGA AAGACCAAGC CCGCGCCATC CGGCTTCCTC CAGTGGACGC CTGCAGGACC 000160
000161 CAGGAATGTT TTTCTTGAAG GCATCCAGCA TCTCCAGTTA GCAGTACTGA TTTTTTTTCC CCCCAACAAA GGAACACTAC 000240
000241 ATCAACACTG TTGGCGGGGA CCTGGACACA GAAGACTCCT GTTTCAAGAA AATACAATCA TCTCTCAAAG GCTGTAATTT 000320
000321 ATATGCATTT TAAAACTCTA GGCATTGAAA ACCACCCAAG TGTCCCAAAT AGAAGGGTAA TATATAATCA ATCACTCAGT 000400
000401 GTAATATTAT ACATCCTTTA AAAATGTTAT TGGGAAATGT TTTATGATCT GTAAGTCCAA GGAATCCTCT CCCACCATTT 000480
000481 CTTTCCCCCC GCTGTTCCCC CATACCCACA CTTCTTTGTT CCAATTGGCA TGTAAATTTG GTTTTCCCGC CAAATGAGTC 000560
000561 AGTCATGATG GGAACCTCAA CTGATTTGAA CAGATGTGTG TCAATGTTAC TTGGAAAACT AGATGTCAAT AACCAGGGTC 000640
000641 ACAGAAAAAG GCAGTGGTCA CAACTCTGTA AAAATGTATG CATGCACACA GACAAGAACT AAAGTGGAAC CCCACACAGG 000720
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Predicted Small Protein

Name ENST00000414769.1_smProtein_443:556
Length 38
Molecular weight 4124.8464
Aromaticity 0.135135135135
Instability index 65.8432432432
Isoelectric point 9.30364990234
Runs 5
Runs residual 0.0446317877511
Runs probability 0.0455043278572
Amino acid sequence MICKSKESSPTISFPPLFPHTHTSLFQLACKFGFPAK
Secondary structure LEELLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLL
PRMN -
PiMo -
Name ENST00000414769.1_smProtein_443:556
Length 37
Molecular weight 4124.8464
Aromaticity 0.135135135135
Instability index 65.8432432432
Isoelectric point 9.30364990234
Runs 5
Runs residual 0.0446317877511
Runs probability 0.0455043278572
Amino acid sequence MICKSKESSPTISFPPLFPHTHTSLFQLACKFGFPAK
Secondary structure LEELLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLL
PRMN -
PiMo -