Difference between revisions of "NONHSAT001640"

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sequence = <dnaseq>GGGATGAAGGAGGCTGTGCCTCCGGGTTGCACGAAGAGTCCGAGTCATTTCTCAGAAGGTTTTGATAGGTGGGCCTTAGAGGAGACGCCGCCGAGCACCGCAAGAACTGGAAAACACACCCCTCTCTGTCTGCCTGGGAGAGCCACGGAAATTGGCACTTCTCTGAGTGAAGCTGAGGAGAAGGCTGTAAATCTGCCAAAACAGCCTTGAAGTATTCTTTTGTCATGAGGAAGTGACGGCTGCTGGAGGGAGGTGAACACCACAAGGAGAGATGGCATCTGGCCTGGGCCCCGCCTAGCAGCAGCTCCACCTCCTAGGCCAGGCCCTGTGGGATGCGCCACTAGACCACCATGGACGGATCCCACAGCGCAGCCCTGAAGCTGCAGCAGCTGCCTCCCACAAGTAGCTCCAGCGCCGTAAGCGAGGCCTCCTTCTCCTACAAGGCAAGGGCTTTTTTGGGGTTTGGGAATTTGTATTTTCCTAGCAAGGAAGTTACACAGTGCTCTGCATTGGCTAACAGATATGTATGGGGTCTGCATGCCTGTCACTGGTAGAAACAGGCAGGCTCTTCACACAGACAAGGGAATGTGTAAGCAAAAGACAAGAGATGggccgggagtggtggctcacacctgtaatcccagcactttgggaggtgggcgggtcacgaggtcaagagattgagaccattctggccagcatggtgaaaccccgtctctactaaaaacacaaagattggctgggcgtggtggtgcccacctgtagtcccagctactcgggaagctgaggcaggagaatcacttgaaccaaggaggtggaggttgcagtgagctgagatggtgccgctgttatccagcctggtgacagagtgagactctgtctcaaaaggaaaaaaaaaaaaaaaaGAGATGCTCATTAAAATACATAAAAA</dnaseq>|
 
sequence = <dnaseq>GGGATGAAGGAGGCTGTGCCTCCGGGTTGCACGAAGAGTCCGAGTCATTTCTCAGAAGGTTTTGATAGGTGGGCCTTAGAGGAGACGCCGCCGAGCACCGCAAGAACTGGAAAACACACCCCTCTCTGTCTGCCTGGGAGAGCCACGGAAATTGGCACTTCTCTGAGTGAAGCTGAGGAGAAGGCTGTAAATCTGCCAAAACAGCCTTGAAGTATTCTTTTGTCATGAGGAAGTGACGGCTGCTGGAGGGAGGTGAACACCACAAGGAGAGATGGCATCTGGCCTGGGCCCCGCCTAGCAGCAGCTCCACCTCCTAGGCCAGGCCCTGTGGGATGCGCCACTAGACCACCATGGACGGATCCCACAGCGCAGCCCTGAAGCTGCAGCAGCTGCCTCCCACAAGTAGCTCCAGCGCCGTAAGCGAGGCCTCCTTCTCCTACAAGGCAAGGGCTTTTTTGGGGTTTGGGAATTTGTATTTTCCTAGCAAGGAAGTTACACAGTGCTCTGCATTGGCTAACAGATATGTATGGGGTCTGCATGCCTGTCACTGGTAGAAACAGGCAGGCTCTTCACACAGACAAGGGAATGTGTAAGCAAAAGACAAGAGATGggccgggagtggtggctcacacctgtaatcccagcactttgggaggtgggcgggtcacgaggtcaagagattgagaccattctggccagcatggtgaaaccccgtctctactaaaaacacaaagattggctgggcgtggtggtgcccacctgtagtcccagctactcgggaagctgaggcaggagaatcacttgaaccaaggaggtggaggttgcagtgagctgagatggtgccgctgttatccagcctggtgacagagtgagactctgtctcaaaaggaaaaaaaaaaaaaaaaGAGATGCTCATTAAAATACATAAAAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG000695]][[Category:Transcripts]]
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[[Category:Sense]][[Category:NONHSAG000695]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:18, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT001640

Source

NONCODE4.0

Same with

,

Classification

sense

Length

931 nt

Genomic location

chr1+:24742302..24746618

Exon number

2

Exons

24742302..24742394,24745781..24746618

Genome context

Sequence
000001 GGGATGAAGG AGGCTGTGCC TCCGGGTTGC ACGAAGAGTC CGAGTCATTT CTCAGAAGGT TTTGATAGGT GGGCCTTAGA 000080
000081 GGAGACGCCG CCGAGCACCG CAAGAACTGG AAAACACACC CCTCTCTGTC TGCCTGGGAG AGCCACGGAA ATTGGCACTT 000160
000161 CTCTGAGTGA AGCTGAGGAG AAGGCTGTAA ATCTGCCAAA ACAGCCTTGA AGTATTCTTT TGTCATGAGG AAGTGACGGC 000240
000241 TGCTGGAGGG AGGTGAACAC CACAAGGAGA GATGGCATCT GGCCTGGGCC CCGCCTAGCA GCAGCTCCAC CTCCTAGGCC 000320
000321 AGGCCCTGTG GGATGCGCCA CTAGACCACC ATGGACGGAT CCCACAGCGC AGCCCTGAAG CTGCAGCAGC TGCCTCCCAC 000400
000401 AAGTAGCTCC AGCGCCGTAA GCGAGGCCTC CTTCTCCTAC AAGGCAAGGG CTTTTTTGGG GTTTGGGAAT TTGTATTTTC 000480
000481 CTAGCAAGGA AGTTACACAG TGCTCTGCAT TGGCTAACAG ATATGTATGG GGTCTGCATG CCTGTCACTG GTAGAAACAG 000560
000561 GCAGGCTCTT CACACAGACA AGGGAATGTG TAAGCAAAAG ACAAGAGATG ggccgggagt ggtggctcac acctgtaatc 000640
000641 ccagcacttt gggaggtggg cgggtcacga ggtcaagaga ttgagaccat tctggccagc atggtgaaac cccgtctcta 000720
000721 ctaaaaacac aaagattggc tgggcgtggt ggtgcccacc tgtagtccca gctactcggg aagctgaggc aggagaatca 000800
000801 cttgaaccaa ggaggtggag gttgcagtga gctgagatgg tgccgctgtt atccagcctg gtgacagagt gagactctgt 000880
000881 ctcaaaagga aaaaaaaaaa aaaaaGAGAT GCTCATTAAA ATACATAAAA A
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Predicted Small Protein

Name NONHSAT001640_smProtein_350:553
Length 68
Molecular weight 7309.1523
Aromaticity 0.134328358209
Instability index 41.5895522388
Isoelectric point 8.74017333984
Runs 9
Runs residual 0.00898648120653
Runs probability 0.0318161298553
Amino acid sequence MDGSHSAALKLQQLPPTSSSSAVSEASFSYKARAFLGFGNLYFPSKEVTQCSALANRYVW
GLHACHW
Secondary structure LLLHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHLLLLEELLLLHHHHHHHHHHHHHH
HHHHLLL
PRMN -
PiMo -