Difference between revisions of "NONHSAT018780"

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sequence = <dnaseq>GAAAGATCATTCATGTATATTCTAAAATTACCACAGTCATAAAAAGTCTTGGACTTTCATGAGGAAATAGCATAGCTAGATATGAAAAAATATAGAAAATCTTCATCAATGGAACTATTCTTGGGGTAGACACTAATCATATGAAAAGACAAATGCTCATTCCCTAAGATAGCCTGAATCTCATTTAAAATGTAGAAAACCCCTTTTTAGTAAAGAGACATCTTCTACAGTAACCACTGAGAAGAAGTGGAAGTTTTTCATCTCCTTTTTTTATTCAAAAAGAAAAAGAATTTCTCAATTTCTGAACCACAGTTCACTTTAGTTAACCCCTTTGATTGCCTAATAATGCCAAAAATGATTTCTCTGTTAATTGGCTTCACATTTTTGCTCTATGCTGAAGTAGTATTGGGAACTGCAGTGTAGCTTCCATCTCTGTTTGGAGGTACACTGATCTGATCTGATACTAGAGAAGATAAAAAATGAATTAGCAAATTGTGAACACAATGAAATGACTGACGTAGGTGTAGATTCCAACATTTTTCTGAAGGTGTCTTGACCAAAAAAAAAAAAAAAAAAGGCACGTGTGAAACCTTTCCATTCTGTTCTTGATGGCTTGGCTTTAATGGCATATGATTATGTCCACACTTATTCTTTCAGCTTTCTTAAAGAGAATATTCAGTTTTAAAGATCATAGCCACTTGTTTTGAGATTTATGTATTAGCTTCGGAGATCAGAACATAAGAATTTGGGGTATGCAAGTCAACTCCCTCACTTTCTTTTAAAAATCCTGGGAAATCCATTATACCTTCTGTGCCTGATTTTCTTCCTTTGCAAGTGGGTTGCTTGGCGTCCAGCTCAGCCACTAATGCAAGTCACCACAACAGGTACGTCTTCAAATACCATCTCAGCAGGCTGGGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATGATGAAGATTTTATCTCCAGCACCAGTAAGAATAATCAATTACAGTACAGCCATTTATGCAAGGCTTATTGATTAATCTGAGTGATACCAAATTGTATCTCTCTTGAGAAGTAGTTAATGTGAAAAATGGGTGAACCTATGATCATACCTTAGTTATATCTTGATGAGATTATGGAAGAAGAAATAGAATGTTTTGAGAAGTGGGGAAAATATCTCACAAAATTTCTCTTGTCTCATGTTCTTCCTGTTTTATTTATCTATGGGATCTACTGCTACAGATTGTCTTTGAATGATCAGGCTTTATCAGAGAATGACATTAAAACAGTAcaaaaaa</dnaseq>|
 
sequence = <dnaseq>GAAAGATCATTCATGTATATTCTAAAATTACCACAGTCATAAAAAGTCTTGGACTTTCATGAGGAAATAGCATAGCTAGATATGAAAAAATATAGAAAATCTTCATCAATGGAACTATTCTTGGGGTAGACACTAATCATATGAAAAGACAAATGCTCATTCCCTAAGATAGCCTGAATCTCATTTAAAATGTAGAAAACCCCTTTTTAGTAAAGAGACATCTTCTACAGTAACCACTGAGAAGAAGTGGAAGTTTTTCATCTCCTTTTTTTATTCAAAAAGAAAAAGAATTTCTCAATTTCTGAACCACAGTTCACTTTAGTTAACCCCTTTGATTGCCTAATAATGCCAAAAATGATTTCTCTGTTAATTGGCTTCACATTTTTGCTCTATGCTGAAGTAGTATTGGGAACTGCAGTGTAGCTTCCATCTCTGTTTGGAGGTACACTGATCTGATCTGATACTAGAGAAGATAAAAAATGAATTAGCAAATTGTGAACACAATGAAATGACTGACGTAGGTGTAGATTCCAACATTTTTCTGAAGGTGTCTTGACCAAAAAAAAAAAAAAAAAAGGCACGTGTGAAACCTTTCCATTCTGTTCTTGATGGCTTGGCTTTAATGGCATATGATTATGTCCACACTTATTCTTTCAGCTTTCTTAAAGAGAATATTCAGTTTTAAAGATCATAGCCACTTGTTTTGAGATTTATGTATTAGCTTCGGAGATCAGAACATAAGAATTTGGGGTATGCAAGTCAACTCCCTCACTTTCTTTTAAAAATCCTGGGAAATCCATTATACCTTCTGTGCCTGATTTTCTTCCTTTGCAAGTGGGTTGCTTGGCGTCCAGCTCAGCCACTAATGCAAGTCACCACAACAGGTACGTCTTCAAATACCATCTCAGCAGGCTGGGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATGATGAAGATTTTATCTCCAGCACCAGTAAGAATAATCAATTACAGTACAGCCATTTATGCAAGGCTTATTGATTAATCTGAGTGATACCAAATTGTATCTCTCTTGAGAAGTAGTTAATGTGAAAAATGGGTGAACCTATGATCATACCTTAGTTATATCTTGATGAGATTATGGAAGAAGAAATAGAATGTTTTGAGAAGTGGGGAAAATATCTCACAAAATTTCTCTTGTCTCATGTTCTTCCTGTTTTATTTATCTATGGGATCTACTGCTACAGATTGTCTTTGAATGATCAGGCTTTATCAGAGAATGACATTAAAACAGTAcaaaaaa</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:NONHSAG008051]][[Category:Transcripts]]
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[[Category:Sense]][[Category:NONHSAG008051]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 20:30, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT018780

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1319 nt

Genomic location

chr11+:35218709..35220102

Exon number

2

Exons

35218709..35219340,35219416..35220102

Genome context

Sequence
000001 GAAAGATCAT TCATGTATAT TCTAAAATTA CCACAGTCAT AAAAAGTCTT GGACTTTCAT GAGGAAATAG CATAGCTAGA 000080
000081 TATGAAAAAA TATAGAAAAT CTTCATCAAT GGAACTATTC TTGGGGTAGA CACTAATCAT ATGAAAAGAC AAATGCTCAT 000160
000161 TCCCTAAGAT AGCCTGAATC TCATTTAAAA TGTAGAAAAC CCCTTTTTAG TAAAGAGACA TCTTCTACAG TAACCACTGA 000240
000241 GAAGAAGTGG AAGTTTTTCA TCTCCTTTTT TTATTCAAAA AGAAAAAGAA TTTCTCAATT TCTGAACCAC AGTTCACTTT 000320
000321 AGTTAACCCC TTTGATTGCC TAATAATGCC AAAAATGATT TCTCTGTTAA TTGGCTTCAC ATTTTTGCTC TATGCTGAAG 000400
000401 TAGTATTGGG AACTGCAGTG TAGCTTCCAT CTCTGTTTGG AGGTACACTG ATCTGATCTG ATACTAGAGA AGATAAAAAA 000480
000481 TGAATTAGCA AATTGTGAAC ACAATGAAAT GACTGACGTA GGTGTAGATT CCAACATTTT TCTGAAGGTG TCTTGACCAA 000560
000561 AAAAAAAAAA AAAAAAGGCA CGTGTGAAAC CTTTCCATTC TGTTCTTGAT GGCTTGGCTT TAATGGCATA TGATTATGTC 000640
000641 CACACTTATT CTTTCAGCTT TCTTAAAGAG AATATTCAGT TTTAAAGATC ATAGCCACTT GTTTTGAGAT TTATGTATTA 000720
000721 GCTTCGGAGA TCAGAACATA AGAATTTGGG GTATGCAAGT CAACTCCCTC ACTTTCTTTT AAAAATCCTG GGAAATCCAT 000800
000801 TATACCTTCT GTGCCTGATT TTCTTCCTTT GCAAGTGGGT TGCTTGGCGT CCAGCTCAGC CACTAATGCA AGTCACCACA 000880
000881 ACAGGTACGT CTTCAAATAC CATCTCAGCA GGCTGGGAGC CAAATGAAGA AAATGAAGAT GAAAGAGACA GACACCTCAG 000960
000961 TTTTTCTGGA TCAGGCATTG ATGATGATGA AGATTTTATC TCCAGCACCA GTAAGAATAA TCAATTACAG TACAGCCATT 001040
001041 TATGCAAGGC TTATTGATTA ATCTGAGTGA TACCAAATTG TATCTCTCTT GAGAAGTAGT TAATGTGAAA AATGGGTGAA 001120
001121 CCTATGATCA TACCTTAGTT ATATCTTGAT GAGATTATGG AAGAAGAAAT AGAATGTTTT GAGAAGTGGG GAAAATATCT 001200
001201 CACAAAATTT CTCTTGTCTC ATGTTCTTCC TGTTTTATTT ATCTATGGGA TCTACTGCTA CAGATTGTCT TTGAATGATC 001280
001281 AGGCTTTATC AGAGAATGAC ATTAAAACAG TAcaaaaaa
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Predicted Small Protein

Name NONHSAT018780_smProtein_923:1060
Length 46
Molecular weight 5208.3184
Aromaticity 0.0666666666667
Instability index 49.9066666667
Isoelectric point 9.60040283203
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0719837484544
Amino acid sequence MKKMKMKETDTSVFLDQALMMMKILSPAPVRIINYSTAIYARLID
Secondary structure LLLLLLLLLLLHHHHHHHHHHHHHLLLLLEEEELLLHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
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