Difference between revisions of "NONHSAT070865"
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sequence = <dnaseq>ctgcattccatatattaactacctattatgtaaaatagctcttatatttatttgtGTAAAGGCTGTCAAGTATCCTGAAAGTTGCTGAAGAAATTAATCTCACCGGCATTTTAGGAGCTCTGAACATTTGCTGTCTCTGGGTTCAAGGGACCACCAGAATTTCTAAGCAAGGAAGAACATGCCAAATGAAGGTAAGTTGCAAAAAGAGGTATTTCCTTTGCCTTGAATACAGGGGTGCTATTCATGGCCCTAAATCTTACCAATACAGAGACCATAAACAGTTGGATTCTGGAAGTCCTTCATCAAGAAATGAATCAATATTTTTGGAGTACTGGCTACATGCAACACACTATGTTTATGAACCTACAAATCCACAATTATGAATATCATTTTTAAAAACTCTGCTTTATATAaacatacaggttaagcatacaggttctggcagcatactctgagtttcatatctccccctcttcacttaccagcaatgttaccttgggcaatttacctctttgggcttcagtttcctgatatgtagaatgagaaaaataatgctacctgtctcacagggttactgtgaggattgatttagattatccaggtaaaactgttagacaatacctggaaactactaagcaccaaataaatgtCATGAGCTGAAGAGGCAGAGAGAGAGGATGC</dnaseq>| | sequence = <dnaseq>ctgcattccatatattaactacctattatgtaaaatagctcttatatttatttgtGTAAAGGCTGTCAAGTATCCTGAAAGTTGCTGAAGAAATTAATCTCACCGGCATTTTAGGAGCTCTGAACATTTGCTGTCTCTGGGTTCAAGGGACCACCAGAATTTCTAAGCAAGGAAGAACATGCCAAATGAAGGTAAGTTGCAAAAAGAGGTATTTCCTTTGCCTTGAATACAGGGGTGCTATTCATGGCCCTAAATCTTACCAATACAGAGACCATAAACAGTTGGATTCTGGAAGTCCTTCATCAAGAAATGAATCAATATTTTTGGAGTACTGGCTACATGCAACACACTATGTTTATGAACCTACAAATCCACAATTATGAATATCATTTTTAAAAACTCTGCTTTATATAaacatacaggttaagcatacaggttctggcagcatactctgagtttcatatctccccctcttcacttaccagcaatgttaccttgggcaatttacctctttgggcttcagtttcctgatatgtagaatgagaaaaataatgctacctgtctcacagggttactgtgaggattgatttagattatccaggtaaaactgttagacaatacctggaaactactaagcaccaaataaatgtCATGAGCTGAAGAGGCAGAGAGAGAGGATGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG027842]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG027842]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:19, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT070865 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
681 nt |
| Genomic location |
chr2-:58955925..58959271 |
| Exon number |
2 |
| Exons |
58955925..58956491,58959158..58959271 |
| Genome context |
|
| Sequence |
000001 ctgcattcca tatattaact acctattatg taaaatagct cttatattta tttgtGTAAA GGCTGTCAAG TATCCTGAAA 000080
000081 GTTGCTGAAG AAATTAATCT CACCGGCATT TTAGGAGCTC TGAACATTTG CTGTCTCTGG GTTCAAGGGA CCACCAGAAT 000160 000161 TTCTAAGCAA GGAAGAACAT GCCAAATGAA GGTAAGTTGC AAAAAGAGGT ATTTCCTTTG CCTTGAATAC AGGGGTGCTA 000240 000241 TTCATGGCCC TAAATCTTAC CAATACAGAG ACCATAAACA GTTGGATTCT GGAAGTCCTT CATCAAGAAA TGAATCAATA 000320 000321 TTTTTGGAGT ACTGGCTACA TGCAACACAC TATGTTTATG AACCTACAAA TCCACAATTA TGAATATCAT TTTTAAAAAC 000400 000401 TCTGCTTTAT ATAaacatac aggttaagca tacaggttct ggcagcatac tctgagtttc atatctcccc ctcttcactt 000480 000481 accagcaatg ttaccttggg caatttacct ctttgggctt cagtttcctg atatgtagaa tgagaaaaat aatgctacct 000560 000561 gtctcacagg gttactgtga ggattgattt agattatcca ggtaaaactg ttagacaata cctggaaact actaagcacc 000640 000641 aaataaatgt CATGAGCTGA AGAGGCAGAG AGAGAGGATG C |
Predicted Small Protein
| Name | NONHSAT070865_smProtein_185:382 |
| Length | 66 |
| Molecular weight | 7768.6943 |
| Aromaticity | 0.153846153846 |
| Instability index | 50.3692307692 |
| Isoelectric point | 8.97637939453 |
| Runs | 7 |
| Runs residual | 0.0425961538462 |
| Runs probability | 0.0461427814369 |
| Amino acid sequence | MKVSCKKRYFLCLEYRGAIHGPKSYQYRDHKQLDSGSPSSRNESIFLEYWLHATHYVYEP TNPQL |
| Secondary structure | LLEEEEEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLLEEELL LLLLL |
| PRMN | - |
| PiMo | - |
