Difference between revisions of "NONHSAT076524"
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sequence = <dnaseq>CGGCCGCGGGGTGGCGCTGCAGGTGGTGCGGGAAGCCAGCCAGGAGAGCAAGTTGCTGTGGGTCATCCGTGAGGACCAGGGCGGCGAGTGGAAGCACGGGCGGATCATCCTGCCCAGCTACGACATGGAGTACCAGATTGTGTTCGAGGGAGTGATAGGGAAAGGACGTTCCGGAGAGATTGCCATTGATGACATTCGGATAAGCACTGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCAGGTGAGAATTTTAAAGGTAAAAAAAAATTTTTTTTTTGCATGCTTTTTCCTTCCCCCATGTGATGTGAATTTGATGGGGGGAATCAACCTCCAAATTTGTCAAATCTCGCAAGAGAAAAGAGACGCCACACCTTCCTGCCGCTAGATGGCACTAGCAACACCTGTAGATGCGGGAAGGGGATTGAGAGCCTCACTGTCTCTTGTTTAATTAAAGTTTAGAAACCTATTAATAGAGACAAATAGGTTACAGATAAACCTTTCA</dnaseq>| | sequence = <dnaseq>CGGCCGCGGGGTGGCGCTGCAGGTGGTGCGGGAAGCCAGCCAGGAGAGCAAGTTGCTGTGGGTCATCCGTGAGGACCAGGGCGGCGAGTGGAAGCACGGGCGGATCATCCTGCCCAGCTACGACATGGAGTACCAGATTGTGTTCGAGGGAGTGATAGGGAAAGGACGTTCCGGAGAGATTGCCATTGATGACATTCGGATAAGCACTGATGTCCCACTGGAGAACTGCATGGAACCCATCTCGGCTTTTGCAGGTGAGAATTTTAAAGGTAAAAAAAAATTTTTTTTTTGCATGCTTTTTCCTTCCCCCATGTGATGTGAATTTGATGGGGGGAATCAACCTCCAAATTTGTCAAATCTCGCAAGAGAAAAGAGACGCCACACCTTCCTGCCGCTAGATGGCACTAGCAACACCTGTAGATGCGGGAAGGGGATTGAGAGCCTCACTGTCTCTTGTTTAATTAAAGTTTAGAAACCTATTAATAGAGACAAATAGGTTACAGATAAACCTTTCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG030323]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG030323]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:44, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT076524 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
515 nt |
| Genomic location |
chr2+:206628525..206631788 |
| Exon number |
3 |
| Exons |
206628525..206628660,206630198..206630294,206631507..206631788 |
| Genome context |
|
| Sequence |
000001 CGGCCGCGGG GTGGCGCTGC AGGTGGTGCG GGAAGCCAGC CAGGAGAGCA AGTTGCTGTG GGTCATCCGT GAGGACCAGG 000080
000081 GCGGCGAGTG GAAGCACGGG CGGATCATCC TGCCCAGCTA CGACATGGAG TACCAGATTG TGTTCGAGGG AGTGATAGGG 000160 000161 AAAGGACGTT CCGGAGAGAT TGCCATTGAT GACATTCGGA TAAGCACTGA TGTCCCACTG GAGAACTGCA TGGAACCCAT 000240 000241 CTCGGCTTTT GCAGGTGAGA ATTTTAAAGG TAAAAAAAAA TTTTTTTTTT GCATGCTTTT TCCTTCCCCC ATGTGATGTG 000320 000321 AATTTGATGG GGGGAATCAA CCTCCAAATT TGTCAAATCT CGCAAGAGAA AAGAGACGCC ACACCTTCCT GCCGCTAGAT 000400 000401 GGCACTAGCA ACACCTGTAG ATGCGGGAAG GGGATTGAGA GCCTCACTGT CTCTTGTTTA ATTAAAGTTT AGAAACCTAT 000480 000481 TAATAGAGAC AAATAGGTTA CAGATAAACC TTTCA |
Predicted Small Protein
| Name | NONHSAT076524_smProtein_209:397 |
| Length | 63 |
| Molecular weight | 7255.5238 |
| Aromaticity | 0.112903225806 |
| Instability index | 65.4096774194 |
| Isoelectric point | 9.79107666016 |
| Runs | 9 |
| Runs residual | 0.00847926267281 |
| Runs probability | 0.0722389055723 |
| Amino acid sequence | MSHWRTAWNPSRLLQVRILKVKKNFFFACFFLPPCDVNLMGGINLQICQISQEKRDATPS CR |
| Secondary structure | LLLLLLLLLLLHHHLLEEEEELLLEEEEEEELLLLLLLLLLLEEEEEEEELLLLLLLLLL LL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooo oo |
