Difference between revisions of "ENST00000316786.1"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>AGGCAAAGCCGGGAGAAACTGCTGAGACGAGGTGGCAGCGGGGACCACGTGAGATGGCGTATGTGGCCTTGAGCGATAAACCTCACCTGTCGGGGGAGGTGGGCGAGGAAGCCTGCAGCTCCTGGAACCCACCACTTTTCTCTCCCAGGCCCTTGCCCAGGCTGTGGCCTCTGCCTGGAACCCCTTTTCTTCCCATCCGAGCCCTTCCCTTCAGTGCCTCTTCCTCTGGGAAGTCCTCTCTGGTGCCCAGCCCGTCCTCTTCTGCCCACTCTGGGTTTCGCACCCCATGCTTAGGCCCTGATTGCCTGCTTTGCACACAGGGCTGTGAGCTCCATGAGGGCAGGAACCACATGGCTGTTCACAGCTGTGTTGCCAGGGCCTGGCCTGGAGACCCTCAGGAAGTGAGACATCTGAATCCTCTGCTCTGTGACCCTGGCAGCCAGGTAGAGCCATCTTGGCCATGGCACCCAGGCTTGGAGCAAGCAGCAGCCTCATGGGTGGGGAACCACGTTTCCCCAGCACATCGGCAGGCCCTAAGGGGACATTCGCTTGGCTCTGCCCTCAGAGCACTGATGCCCGGGGGACACTGCCCTTTGTGTGTCCCATGTAAGAGAGGATGCAACCTTAGAGGGGGCAGGGGTAAACATGGTCCCAGGCCCTGTTGTCCCCTCCTAAGAAAGTTCCCAGTTCTGCCTGTCCATCCCTGGCCTTTTCCCTGTGCTGTCTGGGACAGTGGGTGGAGCTGCCGCTGAGCGGTGGGACCTAGAAAACACATACTGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGGGGTGCAAAGGAAAGGTGGGTGAGGGAAGCAGAGAGAAATCATATTAGTAGCTCACACGTCAACAGTCTAGCTGTGTGCCTGCCTCTCTCATGCACTTCATGGGGATTATTTCCTAGAATTCCCACAAGAGCCCCTTGCAGGTGGTGCGATTGTTAGCTATAATTTGAAGATGAGGAAACTGAGGCACAGAGTAGTTAAGCAATGCACCCAGGAGCCCACAGCTAGGGAGGACAGAGGCTGGATCCAGCCCAGTCCCCTGTCTCCTGGGGCCAGGCCCAGCGCTCCCACCTCTCTGATAAGGATAAAAAGGAGGGAGCGGGAAGGGAGATATTCCAGAGGCAACTACCATGAGACCTCCCGGCAGAGAGGCTTGAAAACATCTTTTGTGTGTGGTACGCAAACCATTTCCCCTTTGGTGTCTCTTTGAAAGATTTTGGGAAGATTTAAACTTTTTTTCAATGATTTGGGGATGTCAGACTGGTGTTTTTTTGAGGGTGACACCGTGATGAGACTGGCCCCCAAGGCAGCCCCGTTTTACTCAGGTTATGGTAATAGAACTTCTGCAGCCTCAAAAGCAGCTTCCGCCGACTGAGCGCTCACCCCGGGGTCCGTGCTGGACTCAGCCTTGACTCGGATGCCCACCCTGAGCCCCACCCGAGAAAGGGATTATTTCATCCCTGCATTATTTCCTTAGAGCTGATGGCAGAATCTGCTCATCTCCAAATTCGCTGTCTCCCCGTTAGGAGTGAGCTTGGTGAGGGCTCCAATCTGGTCTCCCCCGTTCATTGCTGAGTCCCTGGCACCCAGCATCAGCCCCGCATGGAGCAGCTAGTCAATAAAGCTTTGCTGGACACATTTCAGATGAAGAGACTGAGGGTCAGAGAGGTCACATGGCTTGCTTGGAAGAAACATCAGATTTGTCTGGCTCAAGAGTCCACTTCTGGCTCCCCCCTCACACAGTTGCTTAAGAGACCCCCAGCCCAAGACAGCCTCAGAGCCTGGGTCTTCCCCCCCTCCGCCCATTCTCAGGCCCTTATACTAAAACCAGAGAGGCCTCTGAACTGCTGTCTGCCCCCCCAACCTTTTCCTTGCTTATCTGGGAATCACGCAAAAGTTGGCCAGAGTTAGCTCAGTCTCAGAGAAGCTGCATTCTTCTAGAGTCACTCGGTTTTGCGTGACCTGATTCAAATTTTCCATCTTTGTCACTTTGATTCCCACTCTGAGAAGTTTTCTCAGTACATATAACCTTACTATGTGATGACTGGCCTGGGTATTCATATGTGCACTTGTTACCTGTTGCTTATCTCCTGGGGGACCCCTGGTTCAGAGGGGTTTAAGCAGGTGTCCTGGTGAGACCGGGGTTATAATCAGAGACTCTCAGGGTTAGAGCTTGGCCCTGCCACTGAGTGGCCTTGGGAGTCTCATTTGACCTCTCTGAACCTTGGATTCCTCACTTGTGAAATGGGGACAGGTTGAGTTCCTGCATGGAAAGTGTCTTGCTTGATGTCTCGCCAAAAGACCAAAACTGCCGTCACTCACTGCCGGAGAGGCCCTGCACGTGGATATTAGAGTTTGCTGGGTTTTGTTTGTCCTGAGCGAATGTCCGTCCATGTACAGGCTGATGGATTTTGTAGGTGCAAGGTCCCTAACGCAATCAATCTCTCTCCTCAAAAGACCATGAGCATGCCTGGACTCAGAGAGCACCGTGTGTGGGGGGCTGGCGTGGGCACGTGTCCGCAGCTGGGACTGGCTTCTAGGGTTCTGGGCTCAGGCAGGAGGGCGGGGTCCCAGGAGGTCATCTCTCTCTCCTTACCCTGGAGCCTTTGGAATTTGGTTTCCAAATGTCCTGAATTCCTGTTCATTAATATGTGGCTCAGTACAGTGCTTGTCCCGGCAGCAGGAGCTTGGTTGGTGTTAGTCTGCTGGGGAATGGGATAAAGCAGAGAAATGTCAAGCTTTCCCTTAAAAACAAAAAACAAAAGCAAACCCTCACATCTCCCACCAATAACACACCATTGTTATCCCTGTACTTAAGACATGTTGTTGCCGGGCATGGTAGCTCACACTTGTAATCCCGACACTTTGGGAGGCTGAGGCGGGTGGGTCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCTGGAACCCGGGAGGTGGAGGTTGTGGTGAGCTGAGATCGCACCATTGCCCTCCAGCCTGGGCAACAAGAGCAAAACTCTGTAAG</dnaseq>|
 
sequence = <dnaseq>AGGCAAAGCCGGGAGAAACTGCTGAGACGAGGTGGCAGCGGGGACCACGTGAGATGGCGTATGTGGCCTTGAGCGATAAACCTCACCTGTCGGGGGAGGTGGGCGAGGAAGCCTGCAGCTCCTGGAACCCACCACTTTTCTCTCCCAGGCCCTTGCCCAGGCTGTGGCCTCTGCCTGGAACCCCTTTTCTTCCCATCCGAGCCCTTCCCTTCAGTGCCTCTTCCTCTGGGAAGTCCTCTCTGGTGCCCAGCCCGTCCTCTTCTGCCCACTCTGGGTTTCGCACCCCATGCTTAGGCCCTGATTGCCTGCTTTGCACACAGGGCTGTGAGCTCCATGAGGGCAGGAACCACATGGCTGTTCACAGCTGTGTTGCCAGGGCCTGGCCTGGAGACCCTCAGGAAGTGAGACATCTGAATCCTCTGCTCTGTGACCCTGGCAGCCAGGTAGAGCCATCTTGGCCATGGCACCCAGGCTTGGAGCAAGCAGCAGCCTCATGGGTGGGGAACCACGTTTCCCCAGCACATCGGCAGGCCCTAAGGGGACATTCGCTTGGCTCTGCCCTCAGAGCACTGATGCCCGGGGGACACTGCCCTTTGTGTGTCCCATGTAAGAGAGGATGCAACCTTAGAGGGGGCAGGGGTAAACATGGTCCCAGGCCCTGTTGTCCCCTCCTAAGAAAGTTCCCAGTTCTGCCTGTCCATCCCTGGCCTTTTCCCTGTGCTGTCTGGGACAGTGGGTGGAGCTGCCGCTGAGCGGTGGGACCTAGAAAACACATACTGACCTATAGGAGGCACTGCCCAGAGCTCCTAACTGGGGTGGGGTGCAAAGGAAAGGTGGGTGAGGGAAGCAGAGAGAAATCATATTAGTAGCTCACACGTCAACAGTCTAGCTGTGTGCCTGCCTCTCTCATGCACTTCATGGGGATTATTTCCTAGAATTCCCACAAGAGCCCCTTGCAGGTGGTGCGATTGTTAGCTATAATTTGAAGATGAGGAAACTGAGGCACAGAGTAGTTAAGCAATGCACCCAGGAGCCCACAGCTAGGGAGGACAGAGGCTGGATCCAGCCCAGTCCCCTGTCTCCTGGGGCCAGGCCCAGCGCTCCCACCTCTCTGATAAGGATAAAAAGGAGGGAGCGGGAAGGGAGATATTCCAGAGGCAACTACCATGAGACCTCCCGGCAGAGAGGCTTGAAAACATCTTTTGTGTGTGGTACGCAAACCATTTCCCCTTTGGTGTCTCTTTGAAAGATTTTGGGAAGATTTAAACTTTTTTTCAATGATTTGGGGATGTCAGACTGGTGTTTTTTTGAGGGTGACACCGTGATGAGACTGGCCCCCAAGGCAGCCCCGTTTTACTCAGGTTATGGTAATAGAACTTCTGCAGCCTCAAAAGCAGCTTCCGCCGACTGAGCGCTCACCCCGGGGTCCGTGCTGGACTCAGCCTTGACTCGGATGCCCACCCTGAGCCCCACCCGAGAAAGGGATTATTTCATCCCTGCATTATTTCCTTAGAGCTGATGGCAGAATCTGCTCATCTCCAAATTCGCTGTCTCCCCGTTAGGAGTGAGCTTGGTGAGGGCTCCAATCTGGTCTCCCCCGTTCATTGCTGAGTCCCTGGCACCCAGCATCAGCCCCGCATGGAGCAGCTAGTCAATAAAGCTTTGCTGGACACATTTCAGATGAAGAGACTGAGGGTCAGAGAGGTCACATGGCTTGCTTGGAAGAAACATCAGATTTGTCTGGCTCAAGAGTCCACTTCTGGCTCCCCCCTCACACAGTTGCTTAAGAGACCCCCAGCCCAAGACAGCCTCAGAGCCTGGGTCTTCCCCCCCTCCGCCCATTCTCAGGCCCTTATACTAAAACCAGAGAGGCCTCTGAACTGCTGTCTGCCCCCCCAACCTTTTCCTTGCTTATCTGGGAATCACGCAAAAGTTGGCCAGAGTTAGCTCAGTCTCAGAGAAGCTGCATTCTTCTAGAGTCACTCGGTTTTGCGTGACCTGATTCAAATTTTCCATCTTTGTCACTTTGATTCCCACTCTGAGAAGTTTTCTCAGTACATATAACCTTACTATGTGATGACTGGCCTGGGTATTCATATGTGCACTTGTTACCTGTTGCTTATCTCCTGGGGGACCCCTGGTTCAGAGGGGTTTAAGCAGGTGTCCTGGTGAGACCGGGGTTATAATCAGAGACTCTCAGGGTTAGAGCTTGGCCCTGCCACTGAGTGGCCTTGGGAGTCTCATTTGACCTCTCTGAACCTTGGATTCCTCACTTGTGAAATGGGGACAGGTTGAGTTCCTGCATGGAAAGTGTCTTGCTTGATGTCTCGCCAAAAGACCAAAACTGCCGTCACTCACTGCCGGAGAGGCCCTGCACGTGGATATTAGAGTTTGCTGGGTTTTGTTTGTCCTGAGCGAATGTCCGTCCATGTACAGGCTGATGGATTTTGTAGGTGCAAGGTCCCTAACGCAATCAATCTCTCTCCTCAAAAGACCATGAGCATGCCTGGACTCAGAGAGCACCGTGTGTGGGGGGCTGGCGTGGGCACGTGTCCGCAGCTGGGACTGGCTTCTAGGGTTCTGGGCTCAGGCAGGAGGGCGGGGTCCCAGGAGGTCATCTCTCTCTCCTTACCCTGGAGCCTTTGGAATTTGGTTTCCAAATGTCCTGAATTCCTGTTCATTAATATGTGGCTCAGTACAGTGCTTGTCCCGGCAGCAGGAGCTTGGTTGGTGTTAGTCTGCTGGGGAATGGGATAAAGCAGAGAAATGTCAAGCTTTCCCTTAAAAACAAAAAACAAAAGCAAACCCTCACATCTCCCACCAATAACACACCATTGTTATCCCTGTACTTAAGACATGTTGTTGCCGGGCATGGTAGCTCACACTTGTAATCCCGACACTTTGGGAGGCTGAGGCGGGTGGGTCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCTCGTCTCTACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCCCAGCTGCTGGGGAGGCTGAGGCAGGAGAATGGCTGGAACCCGGGAGGTGGAGGTTGTGGTGAGCTGAGATCGCACCATTGCCCTCCAGCCTGGGCAACAAGAGCAAAACTCTGTAAG</dnaseq>|
 
}}
 
}}
[[Category:Sense]][[Category:ENSG00000179082.3]][[Category:lnc-PPP2R4-4]][[Category:Transcripts]]
+
[[Category:Sense]][[Category:ENSG00000179082.3]][[Category:lnc-PPP2R4-4]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 14:40, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000316786.1

Source

Gencode19

Same with

lnc-PPP2R4-4:1

Classification

sense

Length

3145 nt

Genomic location

chr9+:132083295..132087184

Exon number

2

Exons

132083295..132083325,132084071..132087184

Genome context

Sequence
000001 AGGCAAAGCC GGGAGAAACT GCTGAGACGA GGTGGCAGCG GGGACCACGT GAGATGGCGT ATGTGGCCTT GAGCGATAAA 000080
000081 CCTCACCTGT CGGGGGAGGT GGGCGAGGAA GCCTGCAGCT CCTGGAACCC ACCACTTTTC TCTCCCAGGC CCTTGCCCAG 000160
000161 GCTGTGGCCT CTGCCTGGAA CCCCTTTTCT TCCCATCCGA GCCCTTCCCT TCAGTGCCTC TTCCTCTGGG AAGTCCTCTC 000240
000241 TGGTGCCCAG CCCGTCCTCT TCTGCCCACT CTGGGTTTCG CACCCCATGC TTAGGCCCTG ATTGCCTGCT TTGCACACAG 000320
000321 GGCTGTGAGC TCCATGAGGG CAGGAACCAC ATGGCTGTTC ACAGCTGTGT TGCCAGGGCC TGGCCTGGAG ACCCTCAGGA 000400
000401 AGTGAGACAT CTGAATCCTC TGCTCTGTGA CCCTGGCAGC CAGGTAGAGC CATCTTGGCC ATGGCACCCA GGCTTGGAGC 000480
000481 AAGCAGCAGC CTCATGGGTG GGGAACCACG TTTCCCCAGC ACATCGGCAG GCCCTAAGGG GACATTCGCT TGGCTCTGCC 000560
000561 CTCAGAGCAC TGATGCCCGG GGGACACTGC CCTTTGTGTG TCCCATGTAA GAGAGGATGC AACCTTAGAG GGGGCAGGGG 000640
000641 TAAACATGGT CCCAGGCCCT GTTGTCCCCT CCTAAGAAAG TTCCCAGTTC TGCCTGTCCA TCCCTGGCCT TTTCCCTGTG 000720
000721 CTGTCTGGGA CAGTGGGTGG AGCTGCCGCT GAGCGGTGGG ACCTAGAAAA CACATACTGA CCTATAGGAG GCACTGCCCA 000800
000801 GAGCTCCTAA CTGGGGTGGG GTGCAAAGGA AAGGTGGGTG AGGGAAGCAG AGAGAAATCA TATTAGTAGC TCACACGTCA 000880
000881 ACAGTCTAGC TGTGTGCCTG CCTCTCTCAT GCACTTCATG GGGATTATTT CCTAGAATTC CCACAAGAGC CCCTTGCAGG 000960
000961 TGGTGCGATT GTTAGCTATA ATTTGAAGAT GAGGAAACTG AGGCACAGAG TAGTTAAGCA ATGCACCCAG GAGCCCACAG 001040
001041 CTAGGGAGGA CAGAGGCTGG ATCCAGCCCA GTCCCCTGTC TCCTGGGGCC AGGCCCAGCG CTCCCACCTC TCTGATAAGG 001120
001121 ATAAAAAGGA GGGAGCGGGA AGGGAGATAT TCCAGAGGCA ACTACCATGA GACCTCCCGG CAGAGAGGCT TGAAAACATC 001200
001201 TTTTGTGTGT GGTACGCAAA CCATTTCCCC TTTGGTGTCT CTTTGAAAGA TTTTGGGAAG ATTTAAACTT TTTTTCAATG 001280
001281 ATTTGGGGAT GTCAGACTGG TGTTTTTTTG AGGGTGACAC CGTGATGAGA CTGGCCCCCA AGGCAGCCCC GTTTTACTCA 001360
001361 GGTTATGGTA ATAGAACTTC TGCAGCCTCA AAAGCAGCTT CCGCCGACTG AGCGCTCACC CCGGGGTCCG TGCTGGACTC 001440
001441 AGCCTTGACT CGGATGCCCA CCCTGAGCCC CACCCGAGAA AGGGATTATT TCATCCCTGC ATTATTTCCT TAGAGCTGAT 001520
001521 GGCAGAATCT GCTCATCTCC AAATTCGCTG TCTCCCCGTT AGGAGTGAGC TTGGTGAGGG CTCCAATCTG GTCTCCCCCG 001600
001601 TTCATTGCTG AGTCCCTGGC ACCCAGCATC AGCCCCGCAT GGAGCAGCTA GTCAATAAAG CTTTGCTGGA CACATTTCAG 001680
001681 ATGAAGAGAC TGAGGGTCAG AGAGGTCACA TGGCTTGCTT GGAAGAAACA TCAGATTTGT CTGGCTCAAG AGTCCACTTC 001760
001761 TGGCTCCCCC CTCACACAGT TGCTTAAGAG ACCCCCAGCC CAAGACAGCC TCAGAGCCTG GGTCTTCCCC CCCTCCGCCC 001840
001841 ATTCTCAGGC CCTTATACTA AAACCAGAGA GGCCTCTGAA CTGCTGTCTG CCCCCCCAAC CTTTTCCTTG CTTATCTGGG 001920
001921 AATCACGCAA AAGTTGGCCA GA