Difference between revisions of "NONHSAT099997"
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sequence = <dnaseq>CGGGTGCCTCTCGCCCTGCAGGACGTGGCTGGCCTGGTCTGCCCCCAGCTGAGCCTCACCTGAGGGAGAGCTGGGGTGGGCCGCCTCGTTTACGACCGTGTAGTCGTCTTTTGCACACAAAGCCATGTGAGTCCGTACGTGAGTCCTGTGGAAAGACAAGACATGGAATAGGAGTGACGTCCGTCCCCAGGCATGAAGTGGAGAGCATCACGCTGTGTGAGTTAAACACTGGCCAAGCACGGTGTGAGTCGGAGCCGGGGACCTGGCCAGATGAGGGCTGCGTGCAGCTTTCACACCCCAGGCACGTGAGCACCGCCAAGCCCAGCCTCAGCCAGCAGCTGCTCTGCAATGTGGAGTCACCAGTGGCCCCAAGGATGGCAGTGAGAAGTGAAAGAGAAATGGCTGCCCCTGCACCACTTACCGCGAAGGAGGCTCAAGGCTGGGGGGCCCCTCTGCCTTCCAGTGACCGCCCGTGTCACATCCTGACCCGCTCAGCAGagacggccagaggcatggatgcacgctgactcgtggacggccgctGTTTGACGAGACCATCAAGGAGGGAGGAGCACCCGTGGAAAGGCGTGGCAGGGTGGTCGGGGCAGAGGTGTACATCAGCCTATCCAATGCTCACGGCTGGAGGACGCCGCGCCCTGTGAATGCTCACTGAGGACCATCCCGGGCACTGGGGCTCTCCATGTGAGAATGGACAATATGCTGCCTTCCCAGCTGCCCCATCCTTCCTGCGAGAGCTTGGGGATGGGTGGCCACAGTGGCACTGGGGAGAACACGAGGGCTCCCCAGCAAGCGTTTTCTCTCATGGAGGTGGCTCTGGTCACAGCGTCACTGCAGGGCGCAGCCACGGTGGCGGCCAATGGAAACTGGGCtcttctttttctttttttttttgagacagagtctcgctctgtcacccaggctggagtacaatggc</dnaseq>| | sequence = <dnaseq>CGGGTGCCTCTCGCCCTGCAGGACGTGGCTGGCCTGGTCTGCCCCCAGCTGAGCCTCACCTGAGGGAGAGCTGGGGTGGGCCGCCTCGTTTACGACCGTGTAGTCGTCTTTTGCACACAAAGCCATGTGAGTCCGTACGTGAGTCCTGTGGAAAGACAAGACATGGAATAGGAGTGACGTCCGTCCCCAGGCATGAAGTGGAGAGCATCACGCTGTGTGAGTTAAACACTGGCCAAGCACGGTGTGAGTCGGAGCCGGGGACCTGGCCAGATGAGGGCTGCGTGCAGCTTTCACACCCCAGGCACGTGAGCACCGCCAAGCCCAGCCTCAGCCAGCAGCTGCTCTGCAATGTGGAGTCACCAGTGGCCCCAAGGATGGCAGTGAGAAGTGAAAGAGAAATGGCTGCCCCTGCACCACTTACCGCGAAGGAGGCTCAAGGCTGGGGGGCCCCTCTGCCTTCCAGTGACCGCCCGTGTCACATCCTGACCCGCTCAGCAGagacggccagaggcatggatgcacgctgactcgtggacggccgctGTTTGACGAGACCATCAAGGAGGGAGGAGCACCCGTGGAAAGGCGTGGCAGGGTGGTCGGGGCAGAGGTGTACATCAGCCTATCCAATGCTCACGGCTGGAGGACGCCGCGCCCTGTGAATGCTCACTGAGGACCATCCCGGGCACTGGGGCTCTCCATGTGAGAATGGACAATATGCTGCCTTCCCAGCTGCCCCATCCTTCCTGCGAGAGCTTGGGGATGGGTGGCCACAGTGGCACTGGGGAGAACACGAGGGCTCCCCAGCAAGCGTTTTCTCTCATGGAGGTGGCTCTGGTCACAGCGTCACTGCAGGGCGCAGCCACGGTGGCGGCCAATGGAAACTGGGCtcttctttttctttttttttttgagacagagtctcgctctgtcacccaggctggagtacaatggc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG039664]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG039664]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:13, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT099997 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
955 nt |
| Genomic location |
chr5-:1177910..1179415 |
| Exon number |
3 |
| Exons |
1177910..1178366,1178553..1178669,1179035..1179415 |
| Genome context |
|
| Sequence |
000001 CGGGTGCCTC TCGCCCTGCA GGACGTGGCT GGCCTGGTCT GCCCCCAGCT GAGCCTCACC TGAGGGAGAG CTGGGGTGGG 000080
000081 CCGCCTCGTT TACGACCGTG TAGTCGTCTT TTGCACACAA AGCCATGTGA GTCCGTACGT GAGTCCTGTG GAAAGACAAG 000160 000161 ACATGGAATA GGAGTGACGT CCGTCCCCAG GCATGAAGTG GAGAGCATCA CGCTGTGTGA GTTAAACACT GGCCAAGCAC 000240 000241 GGTGTGAGTC GGAGCCGGGG ACCTGGCCAG ATGAGGGCTG CGTGCAGCTT TCACACCCCA GGCACGTGAG CACCGCCAAG 000320 000321 CCCAGCCTCA GCCAGCAGCT GCTCTGCAAT GTGGAGTCAC CAGTGGCCCC AAGGATGGCA GTGAGAAGTG AAAGAGAAAT 000400 000401 GGCTGCCCCT GCACCACTTA CCGCGAAGGA GGCTCAAGGC TGGGGGGCCC CTCTGCCTTC CAGTGACCGC CCGTGTCACA 000480 000481 TCCTGACCCG CTCAGCAGag acggccagag gcatggatgc acgctgactc gtggacggcc gctGTTTGAC GAGACCATCA 000560 000561 AGGAGGGAGG AGCACCCGTG GAAAGGCGTG GCAGGGTGGT CGGGGCAGAG GTGTACATCA GCCTATCCAA TGCTCACGGC 000640 000641 TGGAGGACGC CGCGCCCTGT GAATGCTCAC TGAGGACCAT CCCGGGCACT GGGGCTCTCC ATGTGAGAAT GGACAATATG 000720 000721 CTGCCTTCCC AGCTGCCCCA TCCTTCCTGC GAGAGCTTGG GGATGGGTGG CCACAGTGGC ACTGGGGAGA ACACGAGGGC 000800 000801 TCCCCAGCAA GCGTTTTCTC TCATGGAGGT GGCTCTGGTC ACAGCGTCAC TGCAGGGCGC AGCCACGGTG GCGGCCAATG 000880 000881 GAAACTGGGC tcttcttttt cttttttttt ttgagacaga gtctcgctct gtcacccagg ctggagtaca atggc |
Predicted Small Protein
| Name | NONHSAT099997_smProtein_662:913 |
| Length | 84 |
| Molecular weight | 8884.4772 |
| Aromaticity | 0.156626506024 |
| Instability index | 48.5771084337 |
| Isoelectric point | 5.88922119141 |
| Runs | 13 |
| Runs residual | 0.0165997322624 |
| Runs probability | 0.0381286263639 |
| Amino acid sequence | MLTEDHPGHWGSPCENGQYAAFPAAPSFLRELGDGWPQWHWGEHEGSPASVFSHGGGSGH SVTAGRSHGGGQWKLGSSFSFFF |
| Secondary structure | LLLLLLLLLLLLLLLLLLEEELLLLHHHHHHHLLLLLLLLLLLLLLLLLEEEELLLLLLE EEEEEEELLLLEEEELLEEEEEL |
| PRMN | - |
| PiMo | - |
