Difference between revisions of "NONHSAT105478"
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sequence = <dnaseq>TGGGGAAGTACTTTGCCACAGGAAGTGCAGATGCTTTGGTCAGCCTCTGGGATGTGGATGAGTTAGTGTGTGTTCGGTGCTTTTCCAGGCTGGATTGGCCTGTAAGAACCCTCAGTTTCAGCCATGATGGGAAAATGCTGGCGTCAGCATCGGAAGATCATTTTATTGACATTGCTGAAGTGGAGACAGacagagtctcgttctgtcacccagcctggtgtgcagtggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcgcccaccaccacgcccagctaatttttgtatgtttggtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagcgacccacccgcctcggcctcccagagttttgcgattacaggcgtgagccaccacgcccagcGGAATTTCTTATTCTTTTTGATCTATCAAAACAACCTCATTGTTCTCAATGACTGACCTTATAATAAGTAAATGTTATAGAACA</dnaseq>| | sequence = <dnaseq>TGGGGAAGTACTTTGCCACAGGAAGTGCAGATGCTTTGGTCAGCCTCTGGGATGTGGATGAGTTAGTGTGTGTTCGGTGCTTTTCCAGGCTGGATTGGCCTGTAAGAACCCTCAGTTTCAGCCATGATGGGAAAATGCTGGCGTCAGCATCGGAAGATCATTTTATTGACATTGCTGAAGTGGAGACAGacagagtctcgttctgtcacccagcctggtgtgcagtggttcaagccattctcctgcctcagcctcccgagtagctgggattacaggcgcccaccaccacgcccagctaatttttgtatgtttggtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaagcgacccacccgcctcggcctcccagagttttgcgattacaggcgtgagccaccacgcccagcGGAATTTCTTATTCTTTTTGATCTATCAAAACAACCTCATTGTTCTCAATGACTGACCTTATAATAAGTAAATGTTATAGAACA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG042379]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG042379]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:36, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT105478 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
515 nt |
| Genomic location |
chr5+:177309444..177348388 |
| Exon number |
3 |
| Exons |
177309444..177309531,177309653..177309753,177348063..177348388 |
| Genome context |
|
| Sequence |
000001 TGGGGAAGTA CTTTGCCACA GGAAGTGCAG ATGCTTTGGT CAGCCTCTGG GATGTGGATG AGTTAGTGTG TGTTCGGTGC 000080
000081 TTTTCCAGGC TGGATTGGCC TGTAAGAACC CTCAGTTTCA GCCATGATGG GAAAATGCTG GCGTCAGCAT CGGAAGATCA 000160 000161 TTTTATTGAC ATTGCTGAAG TGGAGACAGa cagagtctcg ttctgtcacc cagcctggtg tgcagtggtt caagccattc 000240 000241 tcctgcctca gcctcccgag tagctgggat tacaggcgcc caccaccacg cccagctaat ttttgtatgt ttggtagaga 000320 000321 cggggtttca ccatgttggc caggctggtc tcaaactcct gacctcaagc gacccacccg cctcggcctc ccagagtttt 000400 000401 gcgattacag gcgtgagcca ccacgcccag cGGAATTTCT TATTCTTTTT GATCTATCAA AACAACCTCA TTGTTCTCAA 000480 000481 TGACTGACCT TATAATAAGT AAATGTTATA GAACA |
Predicted Small Protein
| Name | NONHSAT105478_smProtein_134:262 |
| Length | 43 |
| Molecular weight | 4637.2291 |
| Aromaticity | 0.0714285714286 |
| Instability index | 53.3976190476 |
| Isoelectric point | 4.32672119141 |
| Runs | 7 |
| Runs residual | 0.00949367088608 |
| Runs probability | 0.0291594115124 |
| Amino acid sequence | MLASASEDHFIDIAEVETDRVSFCHPAWCAVVQAILLPQPPE |
| Secondary structure | LLLLLLLLLLLLLLEEELLLEEELLHHHHHHHHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
