Difference between revisions of "NONHSAT035141"

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sequence = <dnaseq>AGGTTATGCGGCACCCCCCGCGCGGGCTGCTGGCTCAGTCCCCCTGCTTGCTGTATCTGCGTCTGGGGACCGCCACCACCCGCATCTGTCTCCACGTGGTGGCCATCCAGGACTCTCAGTGACGACACCGCAGACGGTTGAGCTGGGAGCCCTCACACACTTGCAGGCATCATCATCCCAGCAGGCATGGTGGAGTCTGGGGAGATGCGCAGGAATTCCCGCGGGCTCTTAGAGTCTAGTGTTCAGTGGAAATTCGTGCTGGGGATAAAGAATGGCCCTGGCTGGAGTGGAATTTCGATGACTGCCACATCATCTTCAGGAACTCCATTGTATTCTACGGGCAGCTCCCAAACCCAAGACTGCTGGCAGCAGAAAGGCCTCCAGGAAGGCACCTAGTGACGTAGATAACAAATCCGTTTTATGTGCCACATTTCCTCATAGGATGTGCATAGGATCTCCTTTCCTGAAAGCCAGGACTGGCATGCAGCTCCCTGGTTTGGGGTTGCAGCCACCTGTGTGGAGTCAGTTGTCTGGGCTGTGTCCTTGTCACCAGAATCAGCTCCCCTGACTCTCAGCGTCACACACTTCCTGATCCCAGGCTCACGCGCTGTGAAGCCTGGTGAAAGCACATGTGTCGTCTCTCCTGGGTTCACAGCCTGAGCTGTGCGCTATGAATGCGACTGCACACAGCTGTAGTTTAGGGTGCCTCAGGCTCAACACTGTGTGAGACTTGTTTTTGACTACTTTAATACTTTTCTTTATTTAGAATGTACCCCACACCTTTTCTGGCTTTGTGATGTACTCAAATTGCCTTCGTAGAATTAGGAAATCTGCATATGGAAAATAAACCAAAATCGTATTGC</dnaseq>|
 
sequence = <dnaseq>AGGTTATGCGGCACCCCCCGCGCGGGCTGCTGGCTCAGTCCCCCTGCTTGCTGTATCTGCGTCTGGGGACCGCCACCACCCGCATCTGTCTCCACGTGGTGGCCATCCAGGACTCTCAGTGACGACACCGCAGACGGTTGAGCTGGGAGCCCTCACACACTTGCAGGCATCATCATCCCAGCAGGCATGGTGGAGTCTGGGGAGATGCGCAGGAATTCCCGCGGGCTCTTAGAGTCTAGTGTTCAGTGGAAATTCGTGCTGGGGATAAAGAATGGCCCTGGCTGGAGTGGAATTTCGATGACTGCCACATCATCTTCAGGAACTCCATTGTATTCTACGGGCAGCTCCCAAACCCAAGACTGCTGGCAGCAGAAAGGCCTCCAGGAAGGCACCTAGTGACGTAGATAACAAATCCGTTTTATGTGCCACATTTCCTCATAGGATGTGCATAGGATCTCCTTTCCTGAAAGCCAGGACTGGCATGCAGCTCCCTGGTTTGGGGTTGCAGCCACCTGTGTGGAGTCAGTTGTCTGGGCTGTGTCCTTGTCACCAGAATCAGCTCCCCTGACTCTCAGCGTCACACACTTCCTGATCCCAGGCTCACGCGCTGTGAAGCCTGGTGAAAGCACATGTGTCGTCTCTCCTGGGTTCACAGCCTGAGCTGTGCGCTATGAATGCGACTGCACACAGCTGTAGTTTAGGGTGCCTCAGGCTCAACACTGTGTGAGACTTGTTTTTGACTACTTTAATACTTTTCTTTATTTAGAATGTACCCCACACCTTTTCTGGCTTTGTGATGTACTCAAATTGCCTTCGTAGAATTAGGAAATCTGCATATGGAAAATAAACCAAAATCGTATTGC</dnaseq>|
 
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[[Category:Intronic(S)]][[Category:NONHSAG014172]][[Category:Transcripts]]
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[[Category:Intronic(S)]][[Category:NONHSAG014172]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 21:29, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT035141

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

863 nt

Genomic location

chr13-:110917598..110918460

Exon number

1

Exons

110917598..110918460

Genome context

Sequence
000001 AGGTTATGCG GCACCCCCCG CGCGGGCTGC TGGCTCAGTC CCCCTGCTTG CTGTATCTGC GTCTGGGGAC CGCCACCACC 000080
000081 CGCATCTGTC TCCACGTGGT GGCCATCCAG GACTCTCAGT GACGACACCG CAGACGGTTG AGCTGGGAGC CCTCACACAC 000160
000161 TTGCAGGCAT CATCATCCCA GCAGGCATGG TGGAGTCTGG GGAGATGCGC AGGAATTCCC GCGGGCTCTT AGAGTCTAGT 000240
000241 GTTCAGTGGA AATTCGTGCT GGGGATAAAG AATGGCCCTG GCTGGAGTGG AATTTCGATG ACTGCCACAT CATCTTCAGG 000320
000321 AACTCCATTG TATTCTACGG GCAGCTCCCA AACCCAAGAC TGCTGGCAGC AGAAAGGCCT CCAGGAAGGC ACCTAGTGAC 000400
000401 GTAGATAACA AATCCGTTTT ATGTGCCACA TTTCCTCATA GGATGTGCAT AGGATCTCCT TTCCTGAAAG CCAGGACTGG 000480
000481 CATGCAGCTC CCTGGTTTGG GGTTGCAGCC ACCTGTGTGG AGTCAGTTGT CTGGGCTGTG TCCTTGTCAC CAGAATCAGC 000560
000561 TCCCCTGACT CTCAGCGTCA CACACTTCCT GATCCCAGGC TCACGCGCTG TGAAGCCTGG TGAAAGCACA TGTGTCGTCT 000640
000641 CTCCTGGGTT CACAGCCTGA GCTGTGCGCT ATGAATGCGA CTGCACACAG CTGTAGTTTA GGGTGCCTCA GGCTCAACAC 000720
000721 TGTGTGAGAC TTGTTTTTGA CTACTTTAAT ACTTTTCTTT ATTTAGAATG TACCCCACAC CTTTTCTGGC TTTGTGATGT 000800
000801 ACTCAAATTG CCTTCGTAGA ATTAGGAAAT CTGCATATGG AAAATAAACC AAAATCGTAT TGC
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Predicted Small Protein

Name NONHSAT035141_smProtein_5:121
Length 39
Molecular weight 4229.9953
Aromaticity 0.0263157894737
Instability index 62.2315789474
Isoelectric point 9.68438720703
Runs 6
Runs residual 0.014716066482
Runs probability 0.0474297827239
Amino acid sequence MRHPPRGLLAQSPCLLYLRLGTATTRICLHVVAIQDSQ
Secondary structure LLLLLLLLLLLLHHHHHHHLLLHHHEEEEEEEEEELLL
PRMN -
PiMo -