Difference between revisions of "NONHSAT081509"
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sequence = <dnaseq>aaaatattaaatgttaatatattaaattaaaaGTTAGTAAGTCTCTGGTTTGTGTATTCCACAAAAATCTTTAGTATACTAGCCACAAGCTACATTTACGTGCACAAGGCTTCACACTGATGTTTTGTTGCATGACTTTCTCTGTGAATATTGTCTGTAAATATAAGAAATTCAGTAAGAATTGTCTTTTTTTCTACCTAAGATATATGTTCATGTTCTTGCTGAGAAAATGTATGGAAGTAAAATTAACTAAAAGAGCATATATGTTCCAGATTGGAAGTGATAATGTAGTAAATATTGTCTTTTATATTCCACAAACAGGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGA</dnaseq>| | sequence = <dnaseq>aaaatattaaatgttaatatattaaattaaaaGTTAGTAAGTCTCTGGTTTGTGTATTCCACAAAAATCTTTAGTATACTAGCCACAAGCTACATTTACGTGCACAAGGCTTCACACTGATGTTTTGTTGCATGACTTTCTCTGTGAATATTGTCTGTAAATATAAGAAATTCAGTAAGAATTGTCTTTTTTTCTACCTAAGATATATGTTCATGTTCTTGCTGAGAAAATGTATGGAAGTAAAATTAACTAAAAGAGCATATATGTTCCAGATTGGAAGTGATAATGTAGTAAATATTGTCTTTTATATTCCACAAACAGGAAGAGTAATTCTTCATCTAAAGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATACACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGGTACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAACAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG032565]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG032565]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:06, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT081509 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
614 nt |
| Genomic location |
chr21+:27084331..27087201 |
| Exon number |
2 |
| Exons |
27084331..27084694,27086952..27087201 |
| Genome context |
|
| Sequence |
000001 aaaatattaa atgttaatat attaaattaa aaGTTAGTAA GTCTCTGGTT TGTGTATTCC ACAAAAATCT TTAGTATACT 000080
000081 AGCCACAAGC TACATTTACG TGCACAAGGC TTCACACTGA TGTTTTGTTG CATGACTTTC TCTGTGAATA TTGTCTGTAA 000160 000161 ATATAAGAAA TTCAGTAAGA ATTGTCTTTT TTTCTACCTA AGATATATGT TCATGTTCTT GCTGAGAAAA TGTATGGAAG 000240 000241 TAAAATTAAC TAAAAGAGCA TATATGTTCC AGATTGGAAG TGATAATGTA GTAAATATTG TCTTTTATAT TCCACAAACA 000320 000321 GGAAGAGTAA TTCTTCATCT AAAGCCACGA CAATGAGTGA AAATGATTTC AAGCACACAA AATCCTTTAT AATTTAAAGA 000400 000401 CTCCACTTTA GAGATACACC AAAGCCACCG TTGTTACACA AGTTATTAAA CTATTATAAA ACTCTGCTTT GTCCGACATT 000480 000481 TGCAAAGAGG TACACGAGGA AATGGAATTG GTATTTCATT TTAATTTTCA TGACTACTAA CTCACCTGAA CTTGCTATTT 000560 000561 TAAACAAATA GTTCTGTCGA CACCTAAAAT ATAATCTGGC TTCTTGTGTC TGGA |
Predicted Small Protein
| Name | NONHSAT081509_smProtein_119:355 |
| Length | 79 |
| Molecular weight | 9485.5443 |
| Aromaticity | 0.179487179487 |
| Instability index | 59.881025641 |
| Isoelectric point | 9.87286376953 |
| Runs | 12 |
| Runs residual | 0.0201688555347 |
| Runs probability | 0.0310531119354 |
| Amino acid sequence | MFCCMTFSVNIVCKYKKFSKNCLFFYLRYMFMFLLRKCMEVKLTKRAYMFQIGSDNVVNI VFYIPQTGRVILHLKPRQ |
| Secondary structure | LEEEEEEEEEEEEEEELLLHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHEELLLLEEEE EEEELLLLEEEEEEELLL |
| PRMN | - |
| PiMo | - |
