Difference between revisions of "NONHSAT096300"

Latest revision as of 00:57, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT096300
Source	NONCODE4.0
Same with	,
Classification	sense
Length	1886 nt
Genomic location	chr4-:48887399..48908815
Exon number	6
Exons	48887399..48887582,48894789..48896070,48899821..48899874,48901846..48901942,48906501..48906628,48908675..48908815
Genome context
Sequence	000001 ACAAAGGGCC GGAAGGAAGC CGGGGAGACA GGTGGGGTAC TCGGGAAGCT GGAGCGGGCC GGCGGTGCAG TCACGGGGGA 000080 000081 GCGAGGCCTG CTGGGCTTGG CAACGAGGGA CTCGGCCTCG GAGGCGACCC AGACCACACA GACACTGGGT CAAGGAGTAA 000160 000161 GCAGAGGATA AACAACTGGA AGGAGAGCAA GCACAAAGTC ATCATGGCTT CAGCGTCTGC TCGTGGAAAC CAAGATAAAG 000240 000241 ATGCCCATTT TCCACCACCA AGCAAGCAGA GCCTGTTGTT TTGTCCAAAA TCAAAACTGC ACATCCACAG AGCAGAGATC 000320 000321 TCAAAGATTA TGCGAGAATG TCAGGAAGAA AGTTTCTGGA AGAGAGCTCT GCCTTTTTCT CTTGTAAGCA TGCTTGTCAC 000400 000401 CCAGGGACTA GTCTACCAAG GTTATTTGGC AGCTAATTCT AGATTTGGAT CATTGCCCAA AGTTGCACGT AAGTCATAGA 000480 000481 AATAAAAAAG CAAgccaagt gtggtggctc acatctgtaa tcccagcact ttgggaggct gaggtgggta gattgcttga 000560 000561 gtccaggagt tcgagaccag cctgggcagc atggtgaaac cttgtatcta tttttttaaa aagtaataaa taaataaaaa 000640 000641 CTTTGAAAAA AAGACATTAC TAGCAACTGG AGATACGAAT GTCCAGCCTA ACTAAACTGC CTGTATTGAC TTTTGGAAAA 000720 000721 ATCAGCCCCT ATTTTCTGCC ACTCTGCATT TCTTAGTTCA CTCAACACTT TCTGATATAC AGCTTAGCAG TTGGGACTTC 000800 000801 TTCTTAGACC ATCCTTAAAG CATGGACTAA GAGGGACTGG CAGGATATAT AATGAGATTA TCAATAGCAG AGCCTCTGCA 000880 000881 TGATAGATCA TTTATGGATT TTTATTTTCT TCTTTTGCCC TGGCCAGTCT TTTCAAAATG TTTTCTACGA TGGATATAAA 000960 000961 AAATGAGTAA TTTTTAAGAA TCAGGGGATT TCTAATAATA GAGTAACCAC AAACTTGGGG TTTCATCTTC CTTCACCTGG 001040 001041 TATCAATAGA TCTTTTATGT ACAAAAAGGA CACATTTTAG TTGATAGTCT GAAACCACAT TCATTCCTAG CAGGAGGAAC 001120 001121 AGATTCGAGA TCTCTTCCAT AGGAGGGTCC CTCTCCTTTG TGACCTCTCT CCTATAGGCA AGATGGACTG AAGCTCTCCA 001200 001201 CTACTCCAAG GCCATAAGGA AGATTAGGGG CATTTCTACC CAGTGATTTG GAAGCTACCT ATAGCCACAA CCCAGCCACC 001280 001281 TTCCCCTGCC CCCGTGGCCT CAACCGTTTG CTTGACAGGT GGGCCCTCTC TGGCCATCTG TCTCCAGGAC AGCACTGTGG 001360 001361 CTTGCTCTGT CCTGGCCCTT CCACCACCAG TGCAAAGTTG AGATGGGGAA GTCTCCAGTT CCCAATCCTG TTCTTTTTAA 001440 001441 ATAGAGACTT CATTCTCAGA GTCTTCATTC ATTGATTTAG CGTGGTCCTT TTAATTTTAA AATTACCAGC GTTGATTTTT 001520 001521 AAAGCTCTAG AAAATAACTA ATGGAGAAGA TTCTCAACTA ATCTCTCCCA ACCTGCTTTT ACAGTTGCTG GTCTCTTGGG 001600 001601 ATTTGGCCTT GGAAAGGTAT CATACATAGG AGTATGCCAG AGTAAATTCC ATTTTTTTGA AGATCAGCTC CGTGGGGCTG 001680 001681 GTTTTGGTCC ACAGCATAAC AGGCACTGCC TCCTTACCTG TGAGGAATGC AAAATAAAGC ATGGATTAAG TGAGAAGGGA 001760 001761 GACTCTCAGC CTTCAGCTTC CTAAATTCTG TGTCTGTGAC TTTCGAAGTT TTTTAAACCT CTGAATTTGT ACACATTTAA 001840 001841 AATTTCAAGT GTACTTTAAA ATAAAATACT TCTAATGGAA CAAAAA

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Predicted Small Protein

Name	`NONHSAT096300_smProtein_203:478`
Length	`92`
Molecular weight	`10206.7511`
Aromaticity	`0.0879120879121`
Instability index	`50.6857142857`
Isoelectric point	`10.0197143555`
Runs	`10`
Runs residual	`0.0235805860806`
Runs probability	`0.0269210386857`
Amino acid sequence	`MASASARGNQDKDAHFPPPSKQSLLFCPKSKLHIHRAEISKIMRECQEESFWKRALPFSL VSMLVTQGLVYQGYLAANSRFGSLPKVARKS`
Secondary structure	`LLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLEEEHHHHHHHHHHHHHHHHHHHHLLLHH HHHHHHHHHHHHHHHHHLLLLLLLHHHHLLL`
PRMN	`-`
PiMo	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>ACAAAGGGCCGGAAGGAAGCCGGGGAGACAGGTGGGGTACTCGGGAAGCTGGAGCGGGCCGGCGGTGCAGTCACGGGGGAGCGAGGCCTGCTGGGCTTGGCAACGAGGGACTCGGCCTCGGAGGCGACCCAGACCACACAGACACTGGGTCAAGGAGTAAGCAGAGGATAAACAACTGGAAGGAGAGCAAGCACAAAGTCATCATGGCTTCAGCGTCTGCTCGTGGAAACCAAGATAAAGATGCCCATTTTCCACCACCAAGCAAGCAGAGCCTGTTGTTTTGTCCAAAATCAAAACTGCACATCCACAGAGCAGAGATCTCAAAGATTATGCGAGAATGTCAGGAAGAAAGTTTCTGGAAGAGAGCTCTGCCTTTTTCTCTTGTAAGCATGCTTGTCACCCAGGGACTAGTCTACCAAGGTTATTTGGCAGCTAATTCTAGATTTGGATCATTGCCCAAAGTTGCACGTAAGTCATAGAAATAAAAAAGCAAgccaagtgtggtggctcacatctgtaatcccagcactttgggaggctgaggtgggtagattgcttgagtccaggagttcgagaccagcctgggcagcatggtgaaaccttgtatctatttttttaaaaagtaataaataaataaaaaCTTTGAAAAAAAGACATTACTAGCAACTGGAGATACGAATGTCCAGCCTAACTAAACTGCCTGTATTGACTTTTGGAAAAATCAGCCCCTATTTTCTGCCACTCTGCATTTCTTAGTTCACTCAACACTTTCTGATATACAGCTTAGCAGTTGGGACTTCTTCTTAGACCATCCTTAAAGCATGGACTAAGAGGGACTGGCAGGATATATAATGAGATTATCAATAGCAGAGCCTCTGCATGATAGATCATTTATGGATTTTTATTTTCTTCTTTTGCCCTGGCCAGTCTTTTCAAAATGTTTTCTACGATGGATATAAAAAATGAGTAATTTTTAAGAATCAGGGGATTTCTAATAATAGAGTAACCACAAACTTGGGGTTTCATCTTCCTTCACCTGGTATCAATAGATCTTTTATGTACAAAAAGGACACATTTTAGTTGATAGTCTGAAACCACATTCATTCCTAGCAGGAGGAACAGATTCGAGATCTCTTCCATAGGAGGGTCCCTCTCCTTTGTGACCTCTCTCCTATAGGCAAGATGGACTGAAGCTCTCCACTACTCCAAGGCCATAAGGAAGATTAGGGGCATTTCTACCCAGTGATTTGGAAGCTACCTATAGCCACAACCCAGCCACCTTCCCCTGCCCCCGTGGCCTCAACCGTTTGCTTGACAGGTGGGCCCTCTCTGGCCATCTGTCTCCAGGACAGCACTGTGGCTTGCTCTGTCCTGGCCCTTCCACCACCAGTGCAAAGTTGAGATGGGGAAGTCTCCAGTTCCCAATCCTGTTCTTTTTAAATAGAGACTTCATTCTCAGAGTCTTCATTCATTGATTTAGCGTGGTCCTTTTAATTTTAAAATTACCAGCGTTGATTTTTAAAGCTCTAGAAAATAACTAATGGAGAAGATTCTCAACTAATCTCTCCCAACCTGCTTTTACAGTTGCTGGTCTCTTGGGATTTGGCCTTGGAAAGGTATCATACATAGGAGTATGCCAGAGTAAATTCCATTTTTTTGAAGATCAGCTCCGTGGGGCTGGTTTTGGTCCACAGCATAACAGGCACTGCCTCCTTACCTGTGAGGAATGCAAAATAAAGCATGGATTAAGTGAGAAGGGAGACTCTCAGCCTTCAGCTTCCTAAATTCTGTGTCTGTGACTTTCGAAGTTTTTTAAACCTCTGAATTTGTACACATTTAAAATTTCAAGTGTACTTTAAAATAAAATACTTCTAATGGAACAAAAA</dnaseq>|
 }}
-[[Category:Sense]][[Category:NONHSAG037901]][[Category:Transcripts]]
+[[Category:Sense]][[Category:NONHSAG037901]][[Category:Transcripts]][[Category:Transcripts]]