Difference between revisions of "NONHSAT105563"

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sequence = <dnaseq>GCGTGTGCTGGGGTGGCGACGCCACAGCCACTAACGCGTGTGCGGTGCGGGAGGACAAGGATGTCGGGCAGGGATGTCCTGCTTGGCACCTCAGGACAGAGCCCATGGTGGCTGGCGGCCCCTGGAATGTTCGGGACGCAGAACACTTCGTGCTTGGGAACTTCTCAGAGGTGGGGACGAGGGAGAGGAAGGCGCCTGGATGCCAGGAAGTCTCCATCTTGGACAGCTGGGTGGTATTTAAGAAGGTGGTATTTATTTTTGTCGACCATATTTTGCAGAGACTGGCAAGGATGAGATGATGCCTAAGAATATCCAACTGGAGATACTTAGTTGCTTTTGAATAGGTAATTTGCATGGAGCTCAGGAAGGAAAGATGAGAGGGTTTTAACTTTGTTGGTCGTTAAAAAAAATCAAGAATGTGACCTGTTTGTCACATACGGAATTGTTGGCCACGTTTTAGGAAGCAGTGTCAGTGACTACAGCATTCTGTTTGGAGTTTTATTGAAGATTTCATTCCATAGACACTTTGGAGCACTTATGTGTCAAGTGCTTGACAAGGCCAGGGTCAGCCGCTGTGCAGCCCCTGTAGCAGTTCCCAGGGACCCGGCAAAGCACCAGAGGGGGAGGATGTTGTGTGAGTATCGCTGGTAACCCTTCTCTCTCGCCTCCCTCGTGACTCCAGGTCACTCAAACTGGGCTCCAGAGAGTAAGAACCCCGAGtccaggggctggagaaatagctgtgaaaaccctgcactcatggagttttaattgtactagaggaggggtcagacaagtagaaagtatttatctggtagtgataacactactgttaggggttagggtgtgatggggcggggaattatttcaagcagcagttttggaagttctctttgaggaggtaacacctgagcagagatttgaatacagtgagggaagaaacgatgtgactgtatgggtaaagtgccttctaaagggagggaacagaaatgctgaccagagagaagtgtgcttggtgaactccaggcttggcaaggtcagtatgactggcgagggcctactgaacaaggaagactgcgagatgctgttgcaggagtaactacaggccttgaaggaaggaaatttggatttatttctgtgcctggaaatgattagatttgaaagagtgacatggctgggcacgttttgatagacgcactggtcagcttcaaagaaggcagacagtggtggggctagaggggatacaggaagaccaatgaggaggcaatgacagcagtccaCAATTACAAGTAGCCTCCCACAATTATATAACCTTTCCACAAGGCATTTGCTTTGAGAGCCTAATGATTCTAAGATATTGAAGGGTTTTGGGTGCTATGCTCAGGAGTTTGGATATTATTGTTTTCAGGAATTTAAGAATGATaatatgtattgagcactaactacatgttgggagtttttttgtttgagacacagtttcacttttgttgcccgggctggggtgcaatggcatgacctcggcttaccgcaagctccgcctcccgggttcaagcaattctcctgcctcagcctcccctgtagctgggactacatgcatgcgccatcacgcctggataattttgtacttttagtagagatggggtttccccaggttggtcaggctgaactcctgacttcaggtgatccgcccgcatcggccccctaaagtgctgggattacaggcatgagccactgcgcctggccatgttgggcacttttacaagcactttacattatctaatgcaaccaaaaactgaggtttgccctattaataaatgagaaaactgaggcactcatctgttaagtgccttgctcaggtcccaTGTCCTTGGAACCAGGAGTCCTTCTCCTGTTGATGTTGGAAGGTTCAAAAGTGCTCTTATTACTTGTCACCCAGATGGCAAAGAACTGACATACAAAGGCCCAAGTCTTCCAGAACTGAAAACAGTAATAAAACCTTCATTTATCTGACCCATTTGTCCTGGTGATGCTGTAGTCTGTTAGGAGTACCTAACAGGTGCCCTTCCACAGCCAACTAAAAAACAAAACTATTCAAGCTGAAGAGAAGCAGTGAAACCTCTGATATGAAGCCTGACACACCCTTTGACTTTAGCCAGGACTCACACACTATATTGTTCTGAGTATTCACTGAGGAAGCCCCCGCTTCTGTCAAGGATTCTCATCAGGAACCAGTCTCCTCGGAGAAAGGAGGTTAAAACGTGGTCTGGAGAACCCCTTTCCCTTCTGCTCTATTAACTATGGATATGCAAATGAACACTTACATTTGACCAAGACCTCCATCACCAGTCTGCTTACGCTTCCCCAGGACAGTGGCTACGTGCCAGTAATTCCTGGTGTCCATTTGCTGAGCCCTGTTGGGACCCTTGAAGCGTGATATAATAAGGTCTTCCTTTAGCCTCATTTCTTCCTGCTTCTTGACTTCTACTCTATGCTTAAATCATACATCTCTTAGAATTTCCTGAATATACACTATGCTCTCTTAGCCTCTCTTGCCATTACTCCTATTCTTCCCTGCACCTTCTCATTTCCTCCCGTCTTCTGTTCACCCAACTAGTTCACTCTTATGGCACTGTGTGctaggagctacttgacagcagagagcaggcgtcatttaccctggaattcatagaagctgacttatgctaggagctcaataaatgttagttgcttgaatgaaCTACACTATGAGTAGGAACAAGGTCTTACTCATCCTTGTCACAATAACATGCAGCACAGGCCAATTACTTATGAGTCTCTTGACCACAGACCATCAGATCATGCCAATGTGTATATAGGCAGGGAAATAACCTACCTCAATTAAGTTATAAGCATTCATAAATTTTTCAGAGACCCTTCTCCTCCAGATCTGTTGTGATATTTTTCAGGAGCCAGAGGCAGTTGGAAGCTATGCAGTATCTAGGAGAGGGGTACTGGCACCATATTCTGCAGCTCCACTTTTATTCGTTAAAGAACCCTGACTGGTAACCTCTTTAAATGCCCAGAGGCCCATTTCACAGAGCTCAAGTGGAGGGAATGGCCCTATTTGAGTCTTTTGAATGATGATCCAGCCATAGAGGAAATACCCTGGTCACCCAATTCTCTATAGTTCCAGAGGGCGCTGTGTTTCTTGCTACCTTCAGAGTTACCCTAGTGCATCCTAACTCCTGGTTTATTTCAGACTTCCCTACCTTGAGCTCCTTCTGAGCTCTAAATCACTAGCAACTACTGAGTAGGTGCTCAGTAACT</dnaseq>|
 
sequence = <dnaseq>GCGTGTGCTGGGGTGGCGACGCCACAGCCACTAACGCGTGTGCGGTGCGGGAGGACAAGGATGTCGGGCAGGGATGTCCTGCTTGGCACCTCAGGACAGAGCCCATGGTGGCTGGCGGCCCCTGGAATGTTCGGGACGCAGAACACTTCGTGCTTGGGAACTTCTCAGAGGTGGGGACGAGGGAGAGGAAGGCGCCTGGATGCCAGGAAGTCTCCATCTTGGACAGCTGGGTGGTATTTAAGAAGGTGGTATTTATTTTTGTCGACCATATTTTGCAGAGACTGGCAAGGATGAGATGATGCCTAAGAATATCCAACTGGAGATACTTAGTTGCTTTTGAATAGGTAATTTGCATGGAGCTCAGGAAGGAAAGATGAGAGGGTTTTAACTTTGTTGGTCGTTAAAAAAAATCAAGAATGTGACCTGTTTGTCACATACGGAATTGTTGGCCACGTTTTAGGAAGCAGTGTCAGTGACTACAGCATTCTGTTTGGAGTTTTATTGAAGATTTCATTCCATAGACACTTTGGAGCACTTATGTGTCAAGTGCTTGACAAGGCCAGGGTCAGCCGCTGTGCAGCCCCTGTAGCAGTTCCCAGGGACCCGGCAAAGCACCAGAGGGGGAGGATGTTGTGTGAGTATCGCTGGTAACCCTTCTCTCTCGCCTCCCTCGTGACTCCAGGTCACTCAAACTGGGCTCCAGAGAGTAAGAACCCCGAGtccaggggctggagaaatagctgtgaaaaccctgcactcatggagttttaattgtactagaggaggggtcagacaagtagaaagtatttatctggtagtgataacactactgttaggggttagggtgtgatggggcggggaattatttcaagcagcagttttggaagttctctttgaggaggtaacacctgagcagagatttgaatacagtgagggaagaaacgatgtgactgtatgggtaaagtgccttctaaagggagggaacagaaatgctgaccagagagaagtgtgcttggtgaactccaggcttggcaaggtcagtatgactggcgagggcctactgaacaaggaagactgcgagatgctgttgcaggagtaactacaggccttgaaggaaggaaatttggatttatttctgtgcctggaaatgattagatttgaaagagtgacatggctgggcacgttttgatagacgcactggtcagcttcaaagaaggcagacagtggtggggctagaggggatacaggaagaccaatgaggaggcaatgacagcagtccaCAATTACAAGTAGCCTCCCACAATTATATAACCTTTCCACAAGGCATTTGCTTTGAGAGCCTAATGATTCTAAGATATTGAAGGGTTTTGGGTGCTATGCTCAGGAGTTTGGATATTATTGTTTTCAGGAATTTAAGAATGATaatatgtattgagcactaactacatgttgggagtttttttgtttgagacacagtttcacttttgttgcccgggctggggtgcaatggcatgacctcggcttaccgcaagctccgcctcccgggttcaagcaattctcctgcctcagcctcccctgtagctgggactacatgcatgcgccatcacgcctggataattttgtacttttagtagagatggggtttccccaggttggtcaggctgaactcctgacttcaggtgatccgcccgcatcggccccctaaagtgctgggattacaggcatgagccactgcgcctggccatgttgggcacttttacaagcactttacattatctaatgcaaccaaaaactgaggtttgccctattaataaatgagaaaactgaggcactcatctgttaagtgccttgctcaggtcccaTGTCCTTGGAACCAGGAGTCCTTCTCCTGTTGATGTTGGAAGGTTCAAAAGTGCTCTTATTACTTGTCACCCAGATGGCAAAGAACTGACATACAAAGGCCCAAGTCTTCCAGAACTGAAAACAGTAATAAAACCTTCATTTATCTGACCCATTTGTCCTGGTGATGCTGTAGTCTGTTAGGAGTACCTAACAGGTGCCCTTCCACAGCCAACTAAAAAACAAAACTATTCAAGCTGAAGAGAAGCAGTGAAACCTCTGATATGAAGCCTGACACACCCTTTGACTTTAGCCAGGACTCACACACTATATTGTTCTGAGTATTCACTGAGGAAGCCCCCGCTTCTGTCAAGGATTCTCATCAGGAACCAGTCTCCTCGGAGAAAGGAGGTTAAAACGTGGTCTGGAGAACCCCTTTCCCTTCTGCTCTATTAACTATGGATATGCAAATGAACACTTACATTTGACCAAGACCTCCATCACCAGTCTGCTTACGCTTCCCCAGGACAGTGGCTACGTGCCAGTAATTCCTGGTGTCCATTTGCTGAGCCCTGTTGGGACCCTTGAAGCGTGATATAATAAGGTCTTCCTTTAGCCTCATTTCTTCCTGCTTCTTGACTTCTACTCTATGCTTAAATCATACATCTCTTAGAATTTCCTGAATATACACTATGCTCTCTTAGCCTCTCTTGCCATTACTCCTATTCTTCCCTGCACCTTCTCATTTCCTCCCGTCTTCTGTTCACCCAACTAGTTCACTCTTATGGCACTGTGTGctaggagctacttgacagcagagagcaggcgtcatttaccctggaattcatagaagctgacttatgctaggagctcaataaatgttagttgcttgaatgaaCTACACTATGAGTAGGAACAAGGTCTTACTCATCCTTGTCACAATAACATGCAGCACAGGCCAATTACTTATGAGTCTCTTGACCACAGACCATCAGATCATGCCAATGTGTATATAGGCAGGGAAATAACCTACCTCAATTAAGTTATAAGCATTCATAAATTTTTCAGAGACCCTTCTCCTCCAGATCTGTTGTGATATTTTTCAGGAGCCAGAGGCAGTTGGAAGCTATGCAGTATCTAGGAGAGGGGTACTGGCACCATATTCTGCAGCTCCACTTTTATTCGTTAAAGAACCCTGACTGGTAACCTCTTTAAATGCCCAGAGGCCCATTTCACAGAGCTCAAGTGGAGGGAATGGCCCTATTTGAGTCTTTTGAATGATGATCCAGCCATAGAGGAAATACCCTGGTCACCCAATTCTCTATAGTTCCAGAGGGCGCTGTGTTTCTTGCTACCTTCAGAGTTACCCTAGTGCATCCTAACTCCTGGTTTATTTCAGACTTCCCTACCTTGAGCTCCTTCTGAGCTCTAAATCACTAGCAACTACTGAGTAGGTGCTCAGTAACT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG042410]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG042410]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 01:37, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT105563

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3306 nt

Genomic location

chr5-:178364381..178367686

Exon number

1

Exons

178364381..178367686

Genome context

Sequence
000001 GCGTGTGCTG GGGTGGCGAC GCCACAGCCA CTAACGCGTG TGCGGTGCGG GAGGACAAGG ATGTCGGGCA GGGATGTCCT 000080
000081 GCTTGGCACC TCAGGACAGA GCCCATGGTG GCTGGCGGCC CCTGGAATGT TCGGGACGCA GAACACTTCG TGCTTGGGAA 000160
000161 CTTCTCAGAG GTGGGGACGA GGGAGAGGAA GGCGCCTGGA TGCCAGGAAG TCTCCATCTT GGACAGCTGG GTGGTATTTA 000240
000241 AGAAGGTGGT ATTTATTTTT GTCGACCATA TTTTGCAGAG ACTGGCAAGG ATGAGATGAT GCCTAAGAAT ATCCAACTGG 000320
000321 AGATACTTAG TTGCTTTTGA ATAGGTAATT TGCATGGAGC TCAGGAAGGA AAGATGAGAG GGTTTTAACT TTGTTGGTCG 000400
000401 TTAAAAAAAA TCAAGAATGT GACCTGTTTG TCACATACGG AATTGTTGGC CACGTTTTAG GAAGCAGTGT CAGTGACTAC 000480
000481 AGCATTCTGT TTGGAGTTTT ATTGAAGATT TCATTCCATA GACACTTTGG AGCACTTATG TGTCAAGTGC TTGACAAGGC 000560
000561 CAGGGTCAGC CGCTGTGCAG CCCCTGTAGC AGTTCCCAGG GACCCGGCAA AGCACCAGAG GGGGAGGATG TTGTGTGAGT 000640
000641 ATCGCTGGTA ACCCTTCTCT CTCGCCTCCC TCGTGACTCC AGGTCACTCA AACTGGGCTC CAGAGAGTAA GAACCCCGAG 000720
000721 tccaggggct ggagaaatag ctgtgaaaac cctgcactca tggagtttta attgtactag aggaggggtc agacaagtag 000800
000801 aaagtattta tctggtagtg ataacactac tgttaggggt tagggtgtga tggggcgggg aattatttca agcagcagtt 000880
000881 ttggaagttc tctttgagga ggtaacacct gagcagagat ttgaatacag tgagggaaga aacgatgtga ctgtatgggt 000960
000961 aaagtgcctt ctaaagggag ggaacagaaa tgctgaccag agagaagtgt gcttggtgaa ctccaggctt ggcaaggtca 001040
001041 gtatgactgg cgagggccta ctgaacaagg aagactgcga gatgctgttg caggagtaac tacaggcctt gaaggaagga 001120
001121 aatttggatt tatttctgtg cctggaaatg attagatttg aaagagtgac atggctgggc acgttttgat agacgcactg 001200
001201 gtcagcttca aagaaggcag acagtggtgg ggctagaggg gatacaggaa gaccaatgag gaggcaatga cagcagtcca 001280
001281 CAATTACAAG TAGCCTCCCA CAATTATATA ACCTTTCCAC AAGGCATTTG CTTTGAGAGC CTAATGATTC TAAGATATTG 001360
001361 AAGGGTTTTG GGTGCTATGC TCAGGAGTTT GGATATTATT GTTTTCAGGA ATTTAAGAAT GATaatatgt attgagcact 001440
001441 aactacatgt tgggagtttt tttgtttgag acacagtttc acttttgttg cccgggctgg ggtgcaatgg catgacctcg 001520
001521 gcttaccgca agctccgcct cccgggttca agcaattctc ctgcctcagc ctcccctgta gctgggacta catgcatgcg 001600
001601 ccatcacgcc tggataattt tgtactttta gtagagatgg ggtttcccca ggttggtcag gctgaactcc tgacttcagg 001680
001681 tgatccgccc gcatcggccc cctaaagtgc tgggattaca ggcatgagcc actgcgcctg gccatgttgg gcacttttac 001760
001761 aagcacttta cattatctaa tgcaaccaaa aactgaggtt tgccctatta ataaatgaga aaactgaggc actcatctgt 001840
001841 taagtgcctt gctcaggtcc caTGTCCTTG GAACCAGGAG TCCTTCTCCT GTTGATGTTG GAAGGTTCAA AAGTGCTCTT 001920
001921 ATTACTTGTC ACCCAGATGG CAAAGAACTG ACATACAAAG GCCCAAGTCT TCCAGAACTG AAAACAGTAA TAAAACCTTC 002000
002001 ATTTATCTGA CCCATTTGTC CTGGTGATGC TGTAGTCTGT TAGGAGTACC TAACAGGTGC CCTTCCACAG CCAACTAAAA 002080
002081 AACAAAACTA TTCAAGCTGA AGAGAAGCAG TGAAACCTCT GATATGAAGC CTGACACACC CTTTGACTTT AGCCAGGACT 002160
002161 CACACACTAT ATTGTTCTGA GTATTCACTG AGGAAGCCCC CGCTTCTGTC AAGGATTCTC ATCAGGAACC AGTCTCCTCG 002240
002241 GAGAAAGGAG GTTAAAACGT GGTCTGGAGA ACCCCTTTCC CTTCTGCTCT ATTAACTATG GATATGCAAA TGAACACTTA 002320
002321 CATTTGACCA AGACCTCCAT CACCAGTCTG CTTACGCTTC CCCAGGACAG TGGCTACGTG CCAGTAATTC CTGGTGTCCA 002400
002401 TTTGCTGAGC CCTGTTGGGA CCCTTGAAGC GTGATATAAT AAGGTCTTCC TTTAGCCTCA TTTCTTCCTG CTTCTTGACT 002480
002481 TCTACTCTAT GCTTAAATCA TACATCTCTT AGAATTTCCT GAATATACAC TATGCTCTCT TAGCCTCTCT TGCCATTACT 002560
002561 CCTATTCTTC CCTGCACCTT CTCATTTCCT CCCGTCTTCT GTTCACCCAA CTAGTTCACT CTTATGGCAC TGTGTGctag 002640
002641 gagctacttg acagcagaga gcaggcgtca tttaccctgg aattcataga agctgactta tgctaggagc tcaataaatg 002720
002721 ttagttgctt gaatgaaCTA CACTATGAGT AGGAACAAGG TCTTACTCAT CCTTGTCACA ATAACATGCA GCACAGGCCA 002800
002801 ATTACTTATG AGTCTCTTGA CCACAGACCA TCAGATCATG CCAATGTGTA TATAGGCAGG GAAATAACCT ACCTCAATTA 002880
002881 AGTTATAAGC ATTCATAAAT TTTTCAGAGA CCCTTCTCCT CCAGATCTGT TGTGATATTT TTCAGGAGCC AGAGGCAGTT 002960
002961 GGAAGCTATG CAGTATCTAG GAGAGGGGTA CTGGCACCAT ATTCTGCAGC TCCACTTTTA TTCGTTAAAG AACCCTGACT 003040
003041 GGTAACCTCT TTAAATGCCC AGAGGCCCAT TTCACAGAGC TCAAGTGGAG GGAATGGCCC TATTTGAGTC TTTTGAATGA 003120
003121 TGATCCAGCC ATAGAGGAAA TACCCTGGTC ACCCAATTCT CTATAGTTCC AGAGGGCGCT GTGTTTCTTG CTACCTTCAG 003200
003201 AGTTACCCTA GTGCATCCTA ACTCCTGGTT TATTTCAGAC TTCCCTACCT TGAGCTCCTT CTGAGCTCTA AATCACTAGC 003280
003281 AACTACTGAG TAGGTGCTCA GTAACT
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