Difference between revisions of "ENST00000580180.1"

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sequence = <dnaseq>GAGGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAG</dnaseq>|
 
sequence = <dnaseq>GAGGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAG</dnaseq>|
 
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[[Category:Intergenic]][[Category:ENSG00000175061.13]][[Category:lnc-TRPV2-1]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:ENSG00000175061.13]][[Category:lnc-TRPV2-1]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 18:14, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000580180.1

Source

Gencode19

Same with

lnc-TRPV2-1:3

Classification

intergenic

Length

753 nt

Genomic location

chr17+:16342299..16345144

Exon number

5

Exons

16342299..16342374,16342641..16342728,16343499..16343567,16344388..16344444,16344682..16345144

Genome context

Sequence
000001 GAGGATTGGG ATATTCCGAC TCCTTAAGGG CCTGGCGCAC ATAAGGTGTG ACCTTTTCAT TCCCGTTGTT ATGGAGGGCC 000080
000081 ACATCTGCCA GAGCCTGGAG TCTGCGAAGG CCGGGACCCG GTTCCCCGGC CCACAGTGGG GGTGTGCAAA CCCGAGAGAA 000160
000161 CTGGGTTGCA AATTCGTGAA GAATCAGCAT CATGTTTGGC AGCTGAGTAT TGGAGCCAGG AGCCTGCCAT GAGGTTTTGA 000240
000241 GAACAGAGTG CTGTTTTAGA GCTGGCAGCA GCATCTCAGC CCAAGAGAAG GTTATATTCC CAGAGGATGT CAGTCCCAAG 000320
000321 GACCAGTAGC TGCCATCAGT TTGGATTCTG AAAACTAACT GGCATCAACA CTGGGTGTAG AAACATGCTT GCCTTATGTA 000400
000401 TCAGAGGACA TGCTCAGCAG ATCCAAGAGA TATATTTGGC AACTTTTTCT AGAAAAGGCA CATTGGGTAT CATTCATTAC 000480
000481 ATTCTTGAGT TTTTTTGGGT TTTTTTTTTT TTTTTTGAGA CAGTCTTGCT GTATTGCCCA GGCTGGAGTG TGGTGGCACA 000560
000561 ATCACAGCTC ATTGCATCCT CAATCACCCA GGCCTAAGCA ATCCTCCCAC CTTGTAGCTG GGACTACAGC TCACAGCACA 000640
000641 CCTGGCTAAA ATTTTTTTTT TGTTGAGACG GATTCTCTAT GTTGCCCAGG CTGGTCTCAG GCTCCTGGGC TCAGATGGTC 000720
000721 CTCCTGCCTC AGCTTCCAAA GGCACAGGCC AAG
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