Difference between revisions of "NONHSAT094372"
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sequence = <dnaseq>AGGGGCCGCCGGGGAGGGAGCCCGAGCGCGGCGGGGCGAGACCGGTCCCCGCCCGGCGTTGCCCGGCCCGAGGGACGGCGGCGCCCCCAGGACCCTCCCCAGCGCGGCCCCAGCTCGCTCCGGGACCGCGGGGCCAGGCCGGGCGGGAGCGCGGGGACGTACAcggcggccccgcccgcgcgctcctcctccctcccggcccgccctgcgccggcggcggcggccccAGTCTCCGCGCTGCTGAGGCGCGCCCGGCCGCTCCCACGGCCTCCCCTCCGCCCTGCGGTCCCGCCGCCTCCGGGGCCTCCTGGGACCCTGGCCCTCGCCGGGCAGGACGCCGCCAGCGCTGAAGGCGCAGCCCGGAGGCCGCGCGGATGCAGATCTGTGGATCCAGCGTAGCATCTGTAGCAGCTGGGACATCATTCCAGGTTTTGGGCCCGGTGTGTTGGCAACAACTGGATCTGAAGATGGCAGTCAGGGTGCTTTGGGGTGGTCTCAGCCTGCTCCGAGTGCTGTGGTGTCTCCTTCCGCAGACGGGCTATGTGCACCCAGATGAGTTCTTCCAGTCCCCTGAGGTGATGGCAGGTAAAACTCCGCATGTGTGGCTGAGACAAGCTGCAGCAGAGTCTGCTTGAGAAGCTGACGGGAGACTTTGTGGGGAGGGAGTAGCATGTCTGGGTAGATGAGTAGTAAATCCACAAGCAGAGCAGCAGCCTCTCTCTCTGGGGTAAGAACTTGGAAGTGGGGACTTCATATCTCCTTCCCGAGTGGTGACACTGACCTTCTGGGTAATGCTAATAAACCACCAGTCTCTTTGATGTATCCCTGCTTGGACCAACAATACAGGTCATTCAGAATGAGAGCTGTG</dnaseq>| | sequence = <dnaseq>AGGGGCCGCCGGGGAGGGAGCCCGAGCGCGGCGGGGCGAGACCGGTCCCCGCCCGGCGTTGCCCGGCCCGAGGGACGGCGGCGCCCCCAGGACCCTCCCCAGCGCGGCCCCAGCTCGCTCCGGGACCGCGGGGCCAGGCCGGGCGGGAGCGCGGGGACGTACAcggcggccccgcccgcgcgctcctcctccctcccggcccgccctgcgccggcggcggcggccccAGTCTCCGCGCTGCTGAGGCGCGCCCGGCCGCTCCCACGGCCTCCCCTCCGCCCTGCGGTCCCGCCGCCTCCGGGGCCTCCTGGGACCCTGGCCCTCGCCGGGCAGGACGCCGCCAGCGCTGAAGGCGCAGCCCGGAGGCCGCGCGGATGCAGATCTGTGGATCCAGCGTAGCATCTGTAGCAGCTGGGACATCATTCCAGGTTTTGGGCCCGGTGTGTTGGCAACAACTGGATCTGAAGATGGCAGTCAGGGTGCTTTGGGGTGGTCTCAGCCTGCTCCGAGTGCTGTGGTGTCTCCTTCCGCAGACGGGCTATGTGCACCCAGATGAGTTCTTCCAGTCCCCTGAGGTGATGGCAGGTAAAACTCCGCATGTGTGGCTGAGACAAGCTGCAGCAGAGTCTGCTTGAGAAGCTGACGGGAGACTTTGTGGGGAGGGAGTAGCATGTCTGGGTAGATGAGTAGTAAATCCACAAGCAGAGCAGCAGCCTCTCTCTCTGGGGTAAGAACTTGGAAGTGGGGACTTCATATCTCCTTCCCGAGTGGTGACACTGACCTTCTGGGTAATGCTAATAAACCACCAGTCTCTTTGATGTATCCCTGCTTGGACCAACAATACAGGTCATTCAGAATGAGAGCTGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG037133]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG037133]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:50, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094372 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
868 nt |
Genomic location |
chr3-:196678409..196695931 |
Exon number |
2 |
Exons |
196678409..196678902,196695558..196695931 |
Genome context |
|
Sequence |
000001 AGGGGCCGCC GGGGAGGGAG CCCGAGCGCG GCGGGGCGAG ACCGGTCCCC GCCCGGCGTT GCCCGGCCCG AGGGACGGCG 000080
000081 GCGCCCCCAG GACCCTCCCC AGCGCGGCCC CAGCTCGCTC CGGGACCGCG GGGCCAGGCC GGGCGGGAGC GCGGGGACGT 000160 000161 ACAcggcggc cccgcccgcg cgctcctcct ccctcccggc ccgccctgcg ccggcggcgg cggccccAGT CTCCGCGCTG 000240 000241 CTGAGGCGCG CCCGGCCGCT CCCACGGCCT CCCCTCCGCC CTGCGGTCCC GCCGCCTCCG GGGCCTCCTG GGACCCTGGC 000320 000321 CCTCGCCGGG CAGGACGCCG CCAGCGCTGA AGGCGCAGCC CGGAGGCCGC GCGGATGCAG ATCTGTGGAT CCAGCGTAGC 000400 000401 ATCTGTAGCA GCTGGGACAT CATTCCAGGT TTTGGGCCCG GTGTGTTGGC AACAACTGGA TCTGAAGATG GCAGTCAGGG 000480 000481 TGCTTTGGGG TGGTCTCAGC CTGCTCCGAG TGCTGTGGTG TCTCCTTCCG CAGACGGGCT ATGTGCACCC AGATGAGTTC 000560 000561 TTCCAGTCCC CTGAGGTGAT GGCAGGTAAA ACTCCGCATG TGTGGCTGAG ACAAGCTGCA GCAGAGTCTG CTTGAGAAGC 000640 000641 TGACGGGAGA CTTTGTGGGG AGGGAGTAGC ATGTCTGGGT AGATGAGTAG TAAATCCACA AGCAGAGCAG CAGCCTCTCT 000720 000721 CTCTGGGGTA AGAACTTGGA AGTGGGGACT TCATATCTCC TTCCCGAGTG GTGACACTGA CCTTCTGGGT AATGCTAATA 000800 000801 AACCACCAGT CTCTTTGATG TATCCCTGCT TGGACCAACA ATACAGGTCA TTCAGAATGA GAGCTGTG |
Predicted Small Protein
Name | NONHSAT094372_smProtein_374:634 |
Length | 87 |
Molecular weight | 9370.8579 |
Aromaticity | 0.093023255814 |
Instability index | 53.2023255814 |
Isoelectric point | 6.69317626953 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.0404168874758 |
Amino acid sequence | MQICGSSVASVAAGTSFQVLGPVCWQQLDLKMAVRVLWGGLSLLRVLWCLLPQTGYVHPD EFFQSPEVMAGKTPHVWLRQAAAESA |
Secondary structure | LEEELLLLLEELLLLLEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEELLL LLLLLHHHHLLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |