Difference between revisions of "NONHSAT024869"
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sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>| | sequence = <dnaseq>GGTAACTGAATTCACCCGGTCTCCCTTCCTGCTGTCCAGGAGCTTCAGATTTGGCTATGTGTCCTTCTCTGGCTGGTTCATATGCTCACCATAACAGGAAACCTTTTCGTCATTTTCTTAACGTGGACAGATAATTGTCTCCAAACCCCAATGGACTTGTTCCTTAGAAAAAAGTCATATCGTTCTCTGGCTGCATCACCCAAATATATTTCTACTTCTTTCTAGGGACAGTGGCGTTTATCCCCTTGGCAGTGACATCCTTCAAACACTGCATGGCAACCTGTGACCCCCTGTGCAGCACCATCATTGCAAAAAGCAGGGCCTGCCTCCTGCTGGCTCTGGGATGCTGGATGGGAACCTTCCTGGCTGTGTTGCGCCTGACTATTGTGGTGTCCAGGTTGCCAGACTGTACTGAAAAAATTAGTCCCTTCTTCTGTGACATTGCCTCTTTACTGCAGGTGGCCTGTATTGATATTCATTTCATTGAGATGATAAGCTTCCTTTGATCATCTCTTATGGTCCTGACCTCGCTGGTGCTTAATGCCACATCCTACGCCTACATCATTTCTCCCTCCTGTGCATCCCCTCAGCCCAAGGATGTCAGGAGGCCTTTTCCACCTGTGCTTCACACATCACCATCATCTTTATTGCCTGCCGAAACTCCATCTCCACGTGTGTGAGGCCTAACCCGAGGTATTAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG009918]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG009918]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:48, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT024869 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
700 nt |
| Genomic location |
chr11-:123732530..123733229 |
| Exon number |
1 |
| Exons |
123732530..123733229 |
| Genome context |
|
| Sequence |
000001 GGTAACTGAA TTCACCCGGT CTCCCTTCCT GCTGTCCAGG AGCTTCAGAT TTGGCTATGT GTCCTTCTCT GGCTGGTTCA 000080
000081 TATGCTCACC ATAACAGGAA ACCTTTTCGT CATTTTCTTA ACGTGGACAG ATAATTGTCT CCAAACCCCA ATGGACTTGT 000160 000161 TCCTTAGAAA AAAGTCATAT CGTTCTCTGG CTGCATCACC CAAATATATT TCTACTTCTT TCTAGGGACA GTGGCGTTTA 000240 000241 TCCCCTTGGC AGTGACATCC TTCAAACACT GCATGGCAAC CTGTGACCCC CTGTGCAGCA CCATCATTGC AAAAAGCAGG 000320 000321 GCCTGCCTCC TGCTGGCTCT GGGATGCTGG ATGGGAACCT TCCTGGCTGT GTTGCGCCTG ACTATTGTGG TGTCCAGGTT 000400 000401 GCCAGACTGT ACTGAAAAAA TTAGTCCCTT CTTCTGTGAC ATTGCCTCTT TACTGCAGGT GGCCTGTATT GATATTCATT 000480 000481 TCATTGAGAT GATAAGCTTC CTTTGATCAT CTCTTATGGT CCTGACCTCG CTGGTGCTTA ATGCCACATC CTACGCCTAC 000560 000561 ATCATTTCTC CCTCCTGTGC ATCCCCTCAG CCCAAGGATG TCAGGAGGCC TTTTCCACCT GTGCTTCACA CATCACCATC 000640 000641 ATCTTTATTG CCTGCCGAAA CTCCATCTCC ACGTGTGTGA GGCCTAACCC GAGGTATTAG |
Predicted Small Protein
| Name | NONHSAT024869_smProtein_272:505 |
| Length | 78 |
| Molecular weight | 8468.2407 |
| Aromaticity | 0.0779220779221 |
| Instability index | 68.0207792208 |
| Isoelectric point | 5.52569580078 |
| Runs | 6 |
| Runs residual | 0.0581592320723 |
| Runs probability | 0.0522875816994 |
| Amino acid sequence | MATCDPLCSTIIAKSRACLLLALGCWMGTFLAVLRLTIVVSRLPDCTEKISPFFCDIASL LQVACIDIHFIEMISFL |
| Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLLLLLLLLHHHHHHHHH HHHHHHHHHHHHHHHHL |
| PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHH HHHHHHHHHHHHHLLLL |
| PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiTTTTT TTTTTTTTTTTTToooo |
