Difference between revisions of "ENST00000532116.3"
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sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCGCCTCGGGACCCAGACCAGGATTTCCATCAGCTCCCCTGGCTCGCAGGCCTTCTGACTTCTGACTCACCATCAGCTCTCCTGGATCCAGCTTGCCAATGGCAGATCGTGGGACTCCTTGCCCTCTAATCGCATGAAACAATGCCCACAGTTGATTCCAGATCCTGGCTACTGTGCATAGTGCTGCAGTCAACATGGGAGTGCCGATATCTCTTCAATATACTGATTTCCTTTTCCTTGGGTATCTACCTAACAAGATGGTGAGCTCCTTAGAGGGAAGTATAGTACATATTTCCTCCATGTCTCCAGTACCCAACACAGTGCCTGACGTTGAGAGGGCTCTTAATAAGTGTTTGTGAAAGACTGGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTGCTTAGGACTCAGAGGAGAGAGGAGTGTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGA</dnaseq>| | sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCGCCTCGGGACCCAGACCAGGATTTCCATCAGCTCCCCTGGCTCGCAGGCCTTCTGACTTCTGACTCACCATCAGCTCTCCTGGATCCAGCTTGCCAATGGCAGATCGTGGGACTCCTTGCCCTCTAATCGCATGAAACAATGCCCACAGTTGATTCCAGATCCTGGCTACTGTGCATAGTGCTGCAGTCAACATGGGAGTGCCGATATCTCTTCAATATACTGATTTCCTTTTCCTTGGGTATCTACCTAACAAGATGGTGAGCTCCTTAGAGGGAAGTATAGTACATATTTCCTCCATGTCTCCAGTACCCAACACAGTGCCTGACGTTGAGAGGGCTCTTAATAAGTGTTTGTGAAAGACTGGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTGCTTAGGACTCAGAGGAGAGAGGAGTGTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000175773.8]][[Category:NONHSAG010047]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:ENSG00000175773.8]][[Category:NONHSAG010047]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:12, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000532116.3 |
| Source |
Gencode19 |
| Same with |
NONHSAT140043 |
| Classification |
intergenic |
| Length |
669 nt |
| Genomic location |
chr11+:130184923..130263688 |
| Exon number |
6 |
| Exons |
130184923..130185010,130193809..130193956,130203759..130203865,130238789..130238937,130263390..130263491,130263614..130263688 |
| Genome context |
|
| Sequence |
000001 AGAAAATGGG CCCTCTTGGC CGTCGGGACT TGTACTGTTG GTGACTCCGT CTCCTTAGAC GGTGGAGCCT GCGTGACCCA 000080
000081 GAAAGGCCGC CTCGGGACCC AGACCAGGAT TTCCATCAGC TCCCCTGGCT CGCAGGCCTT CTGACTTCTG ACTCACCATC 000160 000161 AGCTCTCCTG GATCCAGCTT GCCAATGGCA GATCGTGGGA CTCCTTGCCC TCTAATCGCA TGAAACAATG CCCACAGTTG 000240 000241 ATTCCAGATC CTGGCTACTG TGCATAGTGC TGCAGTCAAC ATGGGAGTGC CGATATCTCT TCAATATACT GATTTCCTTT 000320 000321 TCCTTGGGTA TCTACCTAAC AAGATGGTGA GCTCCTTAGA GGGAAGTATA GTACATATTT CCTCCATGTC TCCAGTACCC 000400 000401 AACACAGTGC CTGACGTTGA GAGGGCTCTT AATAAGTGTT TGTGAAAGAC TGGTAGAGCA ATGCCCTATG AAACAAGAAG 000480 000481 CTGGATAACA CTGCTTAGGA CTCAGAGGAG AGAGGAGTGT GGTCTACACT GCACATCTCT GCCAAGCCTG GCACGGGATT 000560 000561 TGAAGTTCCA CACCACTGAG CCAAACACAT CCAGACCCTC TTCCAACCCG GGGATCTGGT GGTAAGCAAA ATACTATTCC 000640 000641 AGCAAGTGAT GCCCCCAGTC TCCTAAGGA |
Predicted Small Protein
| Name | ENST00000532116.3_smProtein_227:349 |
| Length | 41 |
| Molecular weight | 4825.6714 |
| Aromaticity | 0.175 |
| Instability index | 91.03 |
| Isoelectric point | 7.81085205078 |
| Runs | 8 |
| Runs residual | 0.0219758064516 |
| Runs probability | 0.0280758699877 |
| Amino acid sequence | MPTVDSRSWLLCIVLQSTWECRYLFNILISFSLGIYLTRW |
| Secondary structure | LLLLLLLLEEEHHHHHLLHHHHHHHHHHHHHHLLLEEEEL |
| PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLL |
| PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTTiiii |
