Difference between revisions of "NONHSAT025126"
| Line 42: | Line 42: | ||
sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCgcctcgggacccagaccaggatttccatcagctcccctggctcgcaggccttctgacttctgactcaccatcagctctcctggatccagcttgccaatggcagatcgtgggactccttgccctctaatcgcatgaaacaatgcccacagttgattccagatcctggctactgtgcatagtgctgcagtcaacatgggagtgccgatatctcttcaatatactgatttccttttccttgggtatctacctaacaagatggtgagctccttagagggaagtatagtacatatttcctccatgtctccagtacccaacacagtgcctgacgttgagagggctcttaataagtgtttgtgaaagactgGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTgcttaggactcagaggagagaggagtgTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGATATAAGaaacaggaagttgtgtttggctgcggacaaacTCTCTCAGTGCCCCTGGGACTTACAAGATGTTTGGAATGAGGAACGGTGAGCTCTCCCAATGCGAGCTCAGCGGAGGCCCCCAGAAAAACGTGGGGAGGAGAGTTTTCCCCATAAGACAGACTGTCCTTCAGCCCCGGCCACCAAAGAGGAGTAACCCGGGCCTGCTGTTCTCTGGGACTGAATGCGGCTGCATCCTTCCCTTCCTCTGCTTCCTGTCCCGGTACTTACTGACGGTGCACATGCGGGGCTTGGGGAAGCTGAGTGTCTAACCGCGGTGCAGCTACGGATGGGAAATTCTGGGCAGGGACGAGCCTGTCTTCACCTGAGGAATTCCCTCCCACATCACACAGGGCAGAGTGGGAGTGGAGGAGGGCAGAGGACACGTCTCAGGGCCAGTAACCTAGGCTTATAGAAGACGTCATCACCGTCCTCATGATGTTCACCCCGTCTCCTGTTTTTTGGGGCCATGTGTTCCGAAATGTAGCTTCAACTCATCATAGGGGCAAAAAGAAGTGATGAGTCTGTGGCAGCAGAAATCTGGGAATCCAAGGGTCGTGCTACATCTAGTCCTCTTTGATAAATTCTGCCTTCCTGTTCACATTTTTCGAGAAACCATTTTGAATTCCCAAACAGCAAAGGAAATGCTGCAGGTTCCTGGAGGGACCTGGTGATCTGGGGCAGAGCACACGGAGTCGAGATTGCTGCGGGGTTCACGAGCCTCCCCTCCTGGGACCAGGGGCACCTGGGCAGGGTAGTCTGCACCACGCAGGAAAGCCCAGTACACGCAGCTGCTCAACGCTGCAGACGCCATAGCGCAGGGCTGACAAGGCCTCCCTCTTTATCTGCCCTGGACCACAAGTGGAAAATATCAAGACAAAGCAAAAGCCAGTATCCCTTAAGAACTTTCCAATTGTTCTTGTCATTTGTAGTTTTGTTTTTTGGGGGGTGTGGGGAGGGAGGGGTGGTTTGAAACAACTCCGGAGCACACTCCAGAGGAAAACAGGAAGGGTGACATGTTTGGACACCAGAAAAGAGGAAGAGTCCTCACTAAGAGGGTGACTTGGTTAAAAAGTTCAAGCACAAAGGATGTAGAAGCAGGTGGATGTCATCAGAGAACAGATGCGGATCTAGTGAGATGGGTCCTACCACCCCTGGAATATGTTCCTGGGAGAGGGGTGGTCTGCTAGAGTGGACTGGGAATAGTAATATTGCATACTTTTGTAAATTCACAAAACCCTCTGATCTGTGATAGAGGAATAAAGGGCAGAGGATAAACCCCAGATAAAGATTCACTTATCTTAAAAATGAAAGGTTGGAAATTAACTTTATGCTACTGTACCACCTTCGAAGTATTTCTGGCAGGTGCCTGGAGGATTCAGATTAATGACCAAATTACCTGCCAAGTCAGGGCCTCCCATTAGAAGAGAGTACCAGTTTCCATTAGGAGCACTAGCTGGAAAACACAATCTTTCAGCAGAGGAAATACAGTCTTCTCTCCTTCTCTGGGTGCACAGAGTGGTCGTGGTTGGCTGGGGCAgataatggtgtggtcttcctctgcagatctggtttctgagtccctgggctgcagctgttgaatttccagacacaaacaagtatgcgttctgagagcctcgccgagcccacacaaccgggagagccaagctggattccattctgctttgcacatcagcagctctgctgccagctgaactccagggcaaaagctgtgcctggtaatgatgcaggcagcagggatggcacagctGGCCTGGCTTAGGCCGTTAAGGGGGACACGCTTGGCCTTATTTGGGGGAGAGCGAGAAATGGAAGGCGATGAAGAGTTGCGGAAGCATACATCAGCCTCCACAAAACTGGTGCACAGCAGGGAAACAATCTGGTTTTGCTAGTCATCAACAA</dnaseq>| | sequence = <dnaseq>AGAAAATGGGCCCTCTTGGCCGTCGGGACTTGTACTGTTGGTGACTCCGTCTCCTTAGACGGTGGAGCCTGCGTGACCCAGAAAGGCCgcctcgggacccagaccaggatttccatcagctcccctggctcgcaggccttctgacttctgactcaccatcagctctcctggatccagcttgccaatggcagatcgtgggactccttgccctctaatcgcatgaaacaatgcccacagttgattccagatcctggctactgtgcatagtgctgcagtcaacatgggagtgccgatatctcttcaatatactgatttccttttccttgggtatctacctaacaagatggtgagctccttagagggaagtatagtacatatttcctccatgtctccagtacccaacacagtgcctgacgttgagagggctcttaataagtgtttgtgaaagactgGTAGAGCAATGCCCTATGAAACAAGAAGCTGGATAACACTgcttaggactcagaggagagaggagtgTGGTCTACACTGCACATCTCTGCCAAGCCTGGCACGGGATTTGAAGTTCCACACCACTGAGCCAAACACATCCAGACCCTCTTCCAACCCGGGGATCTGGTGGTAAGCAAAATACTATTCCAGCAAGTGATGCCCCCAGTCTCCTAAGGATATAAGaaacaggaagttgtgtttggctgcggacaaacTCTCTCAGTGCCCCTGGGACTTACAAGATGTTTGGAATGAGGAACGGTGAGCTCTCCCAATGCGAGCTCAGCGGAGGCCCCCAGAAAAACGTGGGGAGGAGAGTTTTCCCCATAAGACAGACTGTCCTTCAGCCCCGGCCACCAAAGAGGAGTAACCCGGGCCTGCTGTTCTCTGGGACTGAATGCGGCTGCATCCTTCCCTTCCTCTGCTTCCTGTCCCGGTACTTACTGACGGTGCACATGCGGGGCTTGGGGAAGCTGAGTGTCTAACCGCGGTGCAGCTACGGATGGGAAATTCTGGGCAGGGACGAGCCTGTCTTCACCTGAGGAATTCCCTCCCACATCACACAGGGCAGAGTGGGAGTGGAGGAGGGCAGAGGACACGTCTCAGGGCCAGTAACCTAGGCTTATAGAAGACGTCATCACCGTCCTCATGATGTTCACCCCGTCTCCTGTTTTTTGGGGCCATGTGTTCCGAAATGTAGCTTCAACTCATCATAGGGGCAAAAAGAAGTGATGAGTCTGTGGCAGCAGAAATCTGGGAATCCAAGGGTCGTGCTACATCTAGTCCTCTTTGATAAATTCTGCCTTCCTGTTCACATTTTTCGAGAAACCATTTTGAATTCCCAAACAGCAAAGGAAATGCTGCAGGTTCCTGGAGGGACCTGGTGATCTGGGGCAGAGCACACGGAGTCGAGATTGCTGCGGGGTTCACGAGCCTCCCCTCCTGGGACCAGGGGCACCTGGGCAGGGTAGTCTGCACCACGCAGGAAAGCCCAGTACACGCAGCTGCTCAACGCTGCAGACGCCATAGCGCAGGGCTGACAAGGCCTCCCTCTTTATCTGCCCTGGACCACAAGTGGAAAATATCAAGACAAAGCAAAAGCCAGTATCCCTTAAGAACTTTCCAATTGTTCTTGTCATTTGTAGTTTTGTTTTTTGGGGGGTGTGGGGAGGGAGGGGTGGTTTGAAACAACTCCGGAGCACACTCCAGAGGAAAACAGGAAGGGTGACATGTTTGGACACCAGAAAAGAGGAAGAGTCCTCACTAAGAGGGTGACTTGGTTAAAAAGTTCAAGCACAAAGGATGTAGAAGCAGGTGGATGTCATCAGAGAACAGATGCGGATCTAGTGAGATGGGTCCTACCACCCCTGGAATATGTTCCTGGGAGAGGGGTGGTCTGCTAGAGTGGACTGGGAATAGTAATATTGCATACTTTTGTAAATTCACAAAACCCTCTGATCTGTGATAGAGGAATAAAGGGCAGAGGATAAACCCCAGATAAAGATTCACTTATCTTAAAAATGAAAGGTTGGAAATTAACTTTATGCTACTGTACCACCTTCGAAGTATTTCTGGCAGGTGCCTGGAGGATTCAGATTAATGACCAAATTACCTGCCAAGTCAGGGCCTCCCATTAGAAGAGAGTACCAGTTTCCATTAGGAGCACTAGCTGGAAAACACAATCTTTCAGCAGAGGAAATACAGTCTTCTCTCCTTCTCTGGGTGCACAGAGTGGTCGTGGTTGGCTGGGGCAgataatggtgtggtcttcctctgcagatctggtttctgagtccctgggctgcagctgttgaatttccagacacaaacaagtatgcgttctgagagcctcgccgagcccacacaaccgggagagccaagctggattccattctgctttgcacatcagcagctctgctgccagctgaactccagggcaaaagctgtgcctggtaatgatgcaggcagcagggatggcacagctGGCCTGGCTTAGGCCGTTAAGGGGGACACGCTTGGCCTTATTTGGGGGAGAGCGAGAAATGGAAGGCGATGAAGAGTTGCGGAAGCATACATCAGCCTCCACAAAACTGGTGCACAGCAGGGAAACAATCTGGTTTTGCTAGTCATCAACAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG010047]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG010047]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:49, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT025126 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2628 nt |
| Genomic location |
chr11+:130184923..130273552 |
| Exon number |
8 |
| Exons |
130184923..130185010,130193809..130193956,130203759..130203865,130238789..130238937,130263390..130263491,130263614..130263694,130270905..130270987,130271683..130273552 |
| Genome context |
|
| Sequence |
000001 AGAAAATGGG CCCTCTTGGC CGTCGGGACT TGTACTGTTG GTGACTCCGT CTCCTTAGAC GGTGGAGCCT GCGTGACCCA 000080
000081 GAAAGGCCgc ctcgggaccc agaccaggat ttccatcagc tcccctggct cgcaggcctt ctgacttctg actcaccatc 000160 000161 agctctcctg gatccagctt gccaatggca gatcgtggga ctccttgccc tctaatcgca tgaaacaatg cccacagttg 000240 000241 attccagatc ctggctactg tgcatagtgc tgcagtcaac atgggagtgc cgatatctct tcaatatact gatttccttt 000320 000321 tccttgggta tctacctaac aagatggtga gctccttaga gggaagtata gtacatattt cctccatgtc tccagtaccc 000400 000401 aacacagtgc ctgacgttga gagggctctt aataagtgtt tgtgaaagac tgGTAGAGCA ATGCCCTATG AAACAAGAAG 000480 000481 CTGGATAACA CTgcttagga ctcagaggag agaggagtgT GGTCTACACT GCACATCTCT GCCAAGCCTG GCACGGGATT 000560 000561 TGAAGTTCCA CACCACTGAG CCAAACACAT CCAGACCCTC TTCCAACCCG GGGATCTGGT GGTAAGCAAA ATACTATTCC 000640 000641 AGCAAGTGAT GCCCCCAGTC TCCTAAGGAT ATAAGaaaca ggaagttgtg tttggctgcg gacaaacTCT CTCAGTGCCC 000720 000721 CTGGGACTTA CAAGATGTTT GGAATGAGGA ACGGTGAGCT CTCCCAATGC GAGCTCAGCG GAGGCCCCCA GAAAAACGTG 000800 000801 GGGAGGAGAG TTTTCCCCAT AAGACAGACT GTCCTTCAGC CCCGGCCACC AAAGAGGAGT AACCCGGGCC TGCTGTTCTC 000880 000881 TGGGACTGAA TGCGGCTGCA TCCTTCCCTT CCTCTGCTTC CTGTCCCGGT ACTTACTGAC GGTGCACATG CGGGGCTTGG 000960 000961 GGAAGCTGAG TGTCTAACCG CGGTGCAGCT ACGGATGGGA AATTCTGGGC AGGGACGAGC CTGTCTTCAC CTGAGGAATT 001040 001041 CCCTCCCACA TCACACAGGG CAGAGTGGGA GTGGAGGAGG GCAGAGGACA CGTCTCAGGG CCAGTAACCT AGGCTTATAG 001120 001121 AAGACGTCAT CACCGTCCTC ATGATGTTCA CCCCGTCTCC TGTTTTTTGG GGCCATGTGT TCCGAAATGT AGCTTCAACT 001200 001201 CATCATAGGG GCAAAAAGAA GTGATGAGTC TGTGGCAGCA GAAATCTGGG AATCCAAGGG TCGTGCTACA TCTAGTCCTC 001280 001281 TTTGATAAAT TCTGCCTTCC TGTTCACATT TTTCGAGAAA CCATTTTGAA TTCCCAAACA GCAAAGGAAA TGCTGCAGGT 001360 001361 TCCTGGAGGG ACCTGGTGAT CTGGGGCAGA GCACACGGAG TCGAGATTGC TGCGGGGTTC ACGAGCCTCC CCTCCTGGGA 001440 001441 CCAGGGGCAC CTGGGCAGGG TAGTCTGCAC CACGCAGGAA AGCCCAGTAC ACGCAGCTGC TCAACGCTGC AGACGCCATA 001520 001521 GCGCAGGGCT GACAAGGCCT CCCTCTTTAT CTGCCCTGGA CCACAAGTGG AAAATATCAA GACAAAGCAA AAGCCAGTAT 001600 001601 CCCTTAAGAA CTTTCCAATT GTTCTTGTCA TTTGTAGTTT TGTTTTTTGG GGGGTGTGGG GAGGGAGGGG TGGTTTGAAA 001680 001681 CAACTCCGGA GCACACTCCA GAGGAAAACA GGAAGGGTGA CATGTTTGGA CACCAGAAAA GAGGAAGAGT CCTCACTAAG 001760 001761 AGGGTGACTT GGTTAAAAAG TTCAAGCACA AAGGATGTAG AAGCAGGTGG ATGTCATCAG AGAACAGATG CGGATCTAGT 001840 001841 GAGATGGGTC CTACCACCCC TGGAATATGT TCCTGGGAGA GGGGTGGTCT GCTAGAGTGG ACTGGGAATA GTAATATTGC 001920 001921 ATACTTTTGT AAATTCACAA AACCCTCTGA TCTGTGATAG AGGAATAAAG GGCAGAGGAT AAACCCCAGA TAAAGATTCA 002000 002001 CTTATCTTAA AAATGAAAGG TTGGAAATTA ACTTTATGCT ACTGTACCAC CTTCGAAGTA TTTCTGGCAG GTGCCTGGAG 002080 002081 GATTCAGATT AATGACCAAA TTACCTGCCA AGTCAGGGCC TCCCATTAGA AGAGAGTACC AGTTTCCATT AGGAGCACTA 002160 002161 GCTGGAAAAC ACAATCTTTC AGCAGAGGAA ATACAGTCTT CTCTCCTTCT CTGGGTGCAC AGAGTGGTCG TGGTTGGCTG 002240 002241 GGGCAgataa tggtgtggtc ttcctctgca gatctggttt ctgagtccct gggctgcagc tgttgaattt ccagacacaa 002320 002321 acaagtatgc gttctgagag cctcgccgag cccacacaac cgggagagcc aagctggatt ccattctgct ttgcacatca 002400 002401 gcagctctgc tgccagctga actccagggc aaaagctgtg cctggtaatg atgcaggcag cagggatggc acagctGGCC 002480 002481 TGGCTTAGGC CGTTAAGGGG GACACGCTTG GCCTTATTTG GGGGAGAGCG AGAAATGGAA GGCGATGAAG AGTTGCGGAA 002560 002561 GCATACATCA GCCTCCACAA AACTGGTGCA CAGCAGGGAA ACAATCTGGT TTTGCTAGTC ATCAACAA |
Predicted Small Protein
| Name | NONHSAT025126_smProtein_734:976 |
| Length | 81 |
| Molecular weight | 8892.4818 |
| Aromaticity | 0.075 |
| Instability index | 54.945 |
| Isoelectric point | 10.436706543 |
| Runs | 9 |
| Runs residual | 0.0263157894737 |
| Runs probability | 0.0799034328447 |
| Amino acid sequence | MFGMRNGELSQCELSGGPQKNVGRRVFPIRQTVLQPRPPKRSNPGLLFSGTECGCILPFL CFLSRYLLTVHMRGLGKLSV |
| Secondary structure | LLLLLLLLEEEEELLLLLLLLLLEEEEEEEEEEELLLLLLLLLLLEEELLLLLLLHHHHH HHHHHHHHHHHHHHLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHLLLLLLLLLL |
| PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTT TTTTTTTTTTiiiiiiiiii |
