Difference between revisions of "NONHSAT013691"
Line 42: | Line 42: | ||
sequence = <dnaseq>AACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGGAAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATTTTCAACAGTTTTCTTCATACTGCATTAAAGGTTTTAGAAATACTACATAGGGTAAATGAGAAAATGGGACAGATTATACAGTATGATAAATTTTATATACATGAAGTACAAGAATTGATAGACATAAGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGGTAGGTTTTCTGTGCAATTTGTGATTTCATTTTTATGTATATGTATCTAATAAAAAAAGAAACAATTGCTTGGTTTTGAAATGAGAAAGTTTTTTCAGAACTTTTATCCAGAACTTACTTTTTAAATAATAACACATTGCAAAGGAGTGCTATATATTTTACAATATTTATATGCAAACATTCTACTCTTTTACCAAAGCCAAACCAAAGAAATGGATTACACTGTaaaacaaaacaaaacaagacaaaaaaaacCTACAAGTGTGAAATGGATTTTTAACTCTTTTATTTTCCATGAGGTTGCCTCTTATTTCTCCAGTGTTGAAAATACTGGCATTCTTCATACTGGAACTCCTAAGAATGCATTATTGTTGTGAAATTGGTGCTTCAAGACTACCAAAAGAGgactgggtgtggtggctcatgcctgtaatcttagcactttggagcctgaggcaggtggattccctgagctcgggatttcaagaccagcctcggcaacatgacgaaatcccatctctactaaaaatacaaaaaattagccaagtgtggtggcacatgcctgtaatcccagctactcagaaggctgaggcatgagaatcacttgaacctgggagatggaggttgcagtgagccgaTTATGTGTTTACTTTTATTTCAGATTTTTAATATAAATGTGGGTGCGTACATCTTTTTATGCAGCTAAGTCTTTAATAACTAGACACTATCCCATTAAAATAGTACCATGGTCTTATAAAACTTGAATTAGGCACATAAAATTTTAATGCAGAAATGGGTAAGCAGTTAGATACAAAATATTTAGGTTTACTACTCTTATTTGCTAGCCATTTGTGTATACTTGAGGCCCACTTTTCTGTACCCAGGTAATTTAATATGTGTGCAGCAGTTATATAATAGAAGGGTGAGTAACTTTTCATTGCTTGCTAGGCACCAGCtgtaagctccttgtggatgggtgctcttgtcagtcaaccagcacctctgacagtgtctagaatatgtctagtaagcactaaaaaagtacagtagtttttgaatgGCAATCTGGTTAGTGCACGCTGTTTTTAGGATACTCCCACCTTCCGGAATCAGGTTGCTTCTAGACATCTTTTCCTTCCCTAGTGTACTTGGGTCTGGACTGGGAGAGACTCATTGACTTTTCTCCTGAGTCACTTTGAGGCTGGGTCAGGTTTATAGCCATTCTATAGATTTAGGTCTATTCatttgcttattcaacaaacaatgagaatctgttatataacaggcactgatttaggtattggaaatacagtggtgaaccagacagagccttgtttctcatggaattcgtaatctactgggcaagattggcaatagtcaaacaaagcaaaaaataccagctaataatatgtattattaaaatgaggggacttagtaaagataggtttcagaaaagacttatctaatgaagtatgagtactaatctgaatgacaaggagcagccctttaagatcagggcagagagaatttcaagaacaacgaacatttggtaaaatacctgaggtgaaaacaagcttgacatgattgaaggacagaaaaaagccagcattaggccaggtgtggtggctcacgcctggaatccctgcattttgggaggccgaggtgggcagatcacgaggtcaggagttcaagaccagcctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaacttagccaggcatggtggtgggcgcctgtaatcccagctacttggaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagcttagattgcaccattgcactccagcatgggcgacagtgtgagactcctttc</dnaseq>| | sequence = <dnaseq>AACCTAGAAAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGGAAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGTATTCCCCCTTCTGAAAGAAGAATTTTCAACAGTTTTCTTCATACTGCATTAAAGGTTTTAGAAATACTACATAGGGTAAATGAGAAAATGGGACAGATTATACAGTATGATAAATTTTATATACATGAAGTACAAGAATTGATAGACATAAGAAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGGTAGGTTTTCTGTGCAATTTGTGATTTCATTTTTATGTATATGTATCTAATAAAAAAAGAAACAATTGCTTGGTTTTGAAATGAGAAAGTTTTTTCAGAACTTTTATCCAGAACTTACTTTTTAAATAATAACACATTGCAAAGGAGTGCTATATATTTTACAATATTTATATGCAAACATTCTACTCTTTTACCAAAGCCAAACCAAAGAAATGGATTACACTGTaaaacaaaacaaaacaagacaaaaaaaacCTACAAGTGTGAAATGGATTTTTAACTCTTTTATTTTCCATGAGGTTGCCTCTTATTTCTCCAGTGTTGAAAATACTGGCATTCTTCATACTGGAACTCCTAAGAATGCATTATTGTTGTGAAATTGGTGCTTCAAGACTACCAAAAGAGgactgggtgtggtggctcatgcctgtaatcttagcactttggagcctgaggcaggtggattccctgagctcgggatttcaagaccagcctcggcaacatgacgaaatcccatctctactaaaaatacaaaaaattagccaagtgtggtggcacatgcctgtaatcccagctactcagaaggctgaggcatgagaatcacttgaacctgggagatggaggttgcagtgagccgaTTATGTGTTTACTTTTATTTCAGATTTTTAATATAAATGTGGGTGCGTACATCTTTTTATGCAGCTAAGTCTTTAATAACTAGACACTATCCCATTAAAATAGTACCATGGTCTTATAAAACTTGAATTAGGCACATAAAATTTTAATGCAGAAATGGGTAAGCAGTTAGATACAAAATATTTAGGTTTACTACTCTTATTTGCTAGCCATTTGTGTATACTTGAGGCCCACTTTTCTGTACCCAGGTAATTTAATATGTGTGCAGCAGTTATATAATAGAAGGGTGAGTAACTTTTCATTGCTTGCTAGGCACCAGCtgtaagctccttgtggatgggtgctcttgtcagtcaaccagcacctctgacagtgtctagaatatgtctagtaagcactaaaaaagtacagtagtttttgaatgGCAATCTGGTTAGTGCACGCTGTTTTTAGGATACTCCCACCTTCCGGAATCAGGTTGCTTCTAGACATCTTTTCCTTCCCTAGTGTACTTGGGTCTGGACTGGGAGAGACTCATTGACTTTTCTCCTGAGTCACTTTGAGGCTGGGTCAGGTTTATAGCCATTCTATAGATTTAGGTCTATTCatttgcttattcaacaaacaatgagaatctgttatataacaggcactgatttaggtattggaaatacagtggtgaaccagacagagccttgtttctcatggaattcgtaatctactgggcaagattggcaatagtcaaacaaagcaaaaaataccagctaataatatgtattattaaaatgaggggacttagtaaagataggtttcagaaaagacttatctaatgaagtatgagtactaatctgaatgacaaggagcagccctttaagatcagggcagagagaatttcaagaacaacgaacatttggtaaaatacctgaggtgaaaacaagcttgacatgattgaaggacagaaaaaagccagcattaggccaggtgtggtggctcacgcctggaatccctgcattttgggaggccgaggtgggcagatcacgaggtcaggagttcaagaccagcctgaccaacatagtgaaaccccgtctctactaaaaatacaaaaacttagccaggcatggtggtgggcgcctgtaatcccagctacttggaaggctgaggcaggagaattgcttgaacccaggaggtggaggttgcagtgagcttagattgcaccattgcactccagcatgggcgacagtgtgagactcctttc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG006064]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG006064]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:11, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT013691 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2215 nt |
Genomic location |
chr10-:69724549..69749998 |
Exon number |
3 |
Exons |
69724549..69726559,69748420..69748592,69749968..69749998 |
Genome context |
|
Sequence |
000001 AACCTAGAAA AGGCACCACT GAAAGTACTT GAAAACTGGT GGTCAGTACT TGAACCTCCA CTATTCCTCA AGATAGTAGA 000080
000081 ACTTTTTAAG GAAGTTGTGG TACATCTTTT GAAACTCTAC AAGATCGGTA TTCCCCCTTC TGAAAGAAGA ATTTTCAACA 000160 000161 GTTTTCTTCA TACTGCATTA AAGGTTTTAG AAATACTACA TAGGGTAAAT GAGAAAATGG GACAGATTAT ACAGTATGAT 000240 000241 AAATTTTATA TACATGAAGT ACAAGAATTG ATAGACATAA GAAATGATTA TATCAACTGG GTCCAACAGC AGGCCTATGG 000320 000321 AATGGTAGGT TTTCTGTGCA ATTTGTGATT TCATTTTTAT GTATATGTAT CTAATAAAAA AAGAAACAAT TGCTTGGTTT 000400 000401 TGAAATGAGA AAGTTTTTTC AGAACTTTTA TCCAGAACTT ACTTTTTAAA TAATAACACA TTGCAAAGGA GTGCTATATA 000480 000481 TTTTACAATA TTTATATGCA AACATTCTAC TCTTTTACCA AAGCCAAACC AAAGAAATGG ATTACACTGT aaaacaaaac 000560 000561 aaaacaagac aaaaaaaacC TACAAGTGTG AAATGGATTT TTAACTCTTT TATTTTCCAT GAGGTTGCCT CTTATTTCTC 000640 000641 CAGTGTTGAA AATACTGGCA TTCTTCATAC TGGAACTCCT AAGAATGCAT TATTGTTGTG AAATTGGTGC TTCAAGACTA 000720 000721 CCAAAAGAGg actgggtgtg gtggctcatg cctgtaatct tagcactttg gagcctgagg caggtggatt ccctgagctc 000800 000801 gggatttcaa gaccagcctc ggcaacatga cgaaatccca tctctactaa aaatacaaaa aattagccaa gtgtggtggc 000880 000881 acatgcctgt aatcccagct actcagaagg ctgaggcatg agaatcactt gaacctggga gatggaggtt gcagtgagcc 000960 000961 gaTTATGTGT TTACTTTTAT TTCAGATTTT TAATATAAAT GTGGGTGCGT ACATCTTTTT ATGCAGCTAA GTCTTTAATA 001040 001041 ACTAGACACT ATCCCATTAA AATAGTACCA TGGTCTTATA AAACTTGAAT TAGGCACATA AAATTTTAAT GCAGAAATGG 001120 001121 GTAAGCAGTT AGATACAAAA TATTTAGGTT TACTACTCTT ATTTGCTAGC CATTTGTGTA TACTTGAGGC CCACTTTTCT 001200 001201 GTACCCAGGT AATTTAATAT GTGTGCAGCA GTTATATAAT AGAAGGGTGA GTAACTTTTC ATTGCTTGCT AGGCACCAGC 001280 001281 tgtaagctcc ttgtggatgg gtgctcttgt cagtcaacca gcacctctga cagtgtctag aatatgtcta gtaagcacta 001360 001361 aaaaagtaca gtagtttttg aatgGCAATC TGGTTAGTGC ACGCTGTTTT TAGGATACTC CCACCTTCCG GAATCAGGTT 001440 001441 GCTTCTAGAC ATCTTTTCCT TCCCTAGTGT ACTTGGGTCT GGACTGGGAG AGACTCATTG ACTTTTCTCC TGAGTCACTT 001520 001521 TGAGGCTGGG TCAGGTTTAT AGCCATTCTA TAGATTTAGG TCTATTCatt tgcttattca acaaacaatg agaatctgtt 001600 001601 atataacagg cactgattta ggtattggaa atacagtggt gaaccagaca gagccttgtt tctcatggaa ttcgtaatct 001680 001681 actgggcaag attggcaata gtcaaacaaa gcaaaaaata ccagctaata atatgtatta ttaaaatgag gggacttagt 001760 001761 aaagataggt ttcagaaaag acttatctaa tgaagtatga gtactaatct gaatgacaag gagcagccct ttaagatcag 001840 001841 ggcagagaga atttcaagaa caacgaacat ttggtaaaat acctgaggtg aaaacaagct tgacatgatt gaaggacaga 001920 001921 aaaaagccag cattaggcca ggtgtggtgg ctcacgcctg gaatccctgc attttgggag gccgaggtgg gcagatcacg 002000 002001 aggtcaggag ttcaagacca gcctgaccaa catagtgaaa ccccgtctct actaaaaata caaaaactta gccaggcatg 002080 002081 gtggtgggcg cctgtaatcc cagctacttg gaaggctgag gcaggagaat tgcttgaacc caggaggtgg aggttgcagt 002160 002161 gagcttagat tgcaccattg cactccagca tgggcgacag tgtgagactc ctttc |
Predicted Small Protein
Name | NONHSAT013691_smProtein_1904:2161 |
Length | 86 |
Molecular weight | 9547.8599 |
Aromaticity | 0.0705882352941 |
Instability index | 54.0576470588 |
Isoelectric point | 9.85345458984 |
Runs | 13 |
Runs residual | 0.0163992869875 |
Runs probability | 0.0358050358051 |
Amino acid sequence | MIEGQKKASIRPGVVAHAWNPCILGGRGGQITRSGVQDQPDQHSETPSLLKIQKLSQAWW WAPVIPATWKAEAGELLEPRRWRLQ |
Secondary structure | LLLLLLLLLLLLLEEEELLLLEEELLLLLLEEELLLLLLLLLLLLLLLHHHHHHHHHHHH HLLLLLHHHHHHHHHHLLHHHHLLL |
PRMN | - |
PiMo | - |