Difference between revisions of "ENST00000581794.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>AGATTCGACACAAAACCCGGAAGGACCCCGCCGAAGGTTTTCTCCGGTTCGGGAGAGAGACGGAGTCCCGCTCTGTCACGCAGGCTGCCAGGCTGGCGTACAGTGGCGCAATCTCAGCTCGCTGCAACCTCCACCTCCTGGGTTCAAGCGATTTTCTTGCCTCTGCCTCCTGAGTAGCTGGGATTACTGGCACACACCACCATGCACAGTTGCAGGAATTTAGCCAATTCAGAGGTCTTGTTCTCCATAATTTGGAATTTTCCTTCGGATTTGATCAAGTTGGATAGAGTTGGTCAAACCCAATGGGAAAAAGATGAAAACAACAAGAAACAGAAACAAACAGCAACAACAACAACAACAAAAACAGTTAAGTGAAACAAACAAACAATCACACAATTTATGTGGTCACTGAGTGCTCTAATAGTAAGGAGAAATTAAGACCAGCTGGCTGTTAGTCTTAACTCTAGCCAAGACAAAACTCCAATTCAGCTACTTACCTAGTAATGAGTCTCAGGCTGAAGTCTGCTCTCTCCCATCCTAGAAGCAGGAAAAAACTGAAACTCATCTTCCCTGCTGGAAACGAGCTCAAACTCCAGAAAGGAGTTACCTGCCTTCCATCATCATGGACGCAGGAAAATTTGCCTTCCTTGTTGGAAGCAAGTAAAACTCCAAAAAAGGAGTTGCACAGCAAAATAAACTTCAGATCTCAACAAATTTGGGGAGATCAGGGATTCTCTGGGGGTGGGGTGGCTCCCAGGCCTCAGCCAATTGTCCTATTGGTTTCAGCCATAAAGACAGCTCAGGCTGCTACCACGCACTGATAGGAGATTTGTCAAAGATCGAGGCATCTTCACTCAGAATCCCTCTGTGATTACCAATTGTGAACACAAAATATCTGATATGGGTCTCAGTCAATTTAGAAAGTTTATTTTGCCAAGGTTAAGGACACATCCATGACATAGCCTCAGGAGGTTCTGTTGACGTGTGCAAGGTGGTTGGGGCACAGCTTGGTTTTACACATTTTAGGGAGACATGAGATATCAATCAATATATGTTAAGACATATATCAGGTGGTCCAAAAAGGTGGGATGACTGGAAACAGGGAGGGGGCTTCCAGGTGATAGGTAGATAAGAGAAAAACAGTTGCATTCTTTTGAGTTTCTAATAAGCCTTTCACTGAATACACAATTTACAGGACTAATCACTTAAGCCTTAGCCTGGCTCAGTGAAACAACAGGGCAAAGGAAGCAATCAGCTATGCATTTGTCTCACGTGAGCAGAGGGATGACTTTGAGTTCTGTCTAGCTATCTTGTTTAGGAATATAATGAGAGGCAGGTTTGCGTGCAGTTTCCAGATTGACTTTTCCCTTTGGCTTAGTGACTTTGAGGTCCCAAGATTTATTTTCCTTTAACATTTACAAGGAGAAGTGAAGAAATAAGTAAATTAGAGAGCTAGAAGGATGGAAGTTTACAGTTAGAGAGAGTGGGATGTTGAAGGTAATACTGGTTGCATATTTCTTATCCAAAATGCTTGGGACCAGAAGTGTTTCAGATTTCAGATGTTTTCAGATTTTGGAATATTTGCATTATACAGGTTCAGCACCCCTAATCTGAAAACGTGAAATCCAAAATTCTCCAATGATTGTTTCCTTTGAGCATCACAATGGTGCTCAAAAGGTTTTGGATTTTAGAGCATTTCAAATTTCAGATTTTCAGATTAGGGATAATAAACCTATATCTCAGAAACGGTACATTTCTGAATAATGACAAATTGTCATTATTTGCCATGAGAATTGTCATTAATGTGGGTGGAGATGGGGATGATTGTAGGTCAAGAGACTGAAGCAATAGGGTAGGCTTGGGTGTTAGTACGGCCCTTCATGGGAATGTGTTGATGTCATCCAGGGTCACGGGAGGCTTCTGAGTGGGAAGGAAGCTGAGAGCCTATGATTACGGTCTTCACTGATGAAGGCAGACAGTAGGAGGTTGGCAGATGGTGGGCACTGACTAGACTGGAAGTGCCAAGAACTTCAGTGGAGCAAGGTTTTACCCAAGACACAGAGGTTGTGGTCTAGAGCAGCCCAGGGATGAAGGATCACCCATTGGAGAGGACTGTGGGGAAAGCAGAGTCCTGGGAGATGAACCAAGCATCAGTTGAGGCTGGAACAGTTAAAATGTATACATCAAATTCTCTCCAAGGACACTGTACCCTTGGCTGAAAATTCCCTCCTTAGTCTACTTCCCATCCCAAATTCTACCCATCCACACTGTGGCATCCTAGGTCTCTCTAGCAGCTGAACAGGCAGGCCTCTGTAACAACTGTTTCAGCGCTGACTGAGTGGTTAAGTTAAATATTAAAAGTTGAAAGAGCCAGTAACCTTATACAAAGGCTGGAATAGAACAAAAGCCCACCACAAGTTTTTGCCTAAGTCTTTCCTGTGCCTTGAACCATGACAAGAGGAGGAAGGAATTCTTAACCAGACCCATTTAGGATTAAGTAAGTTTTTATTGGCTGGGTACGGTGGCTCACACCTATAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAGTACCAAAATGAGCCAAGCATGGTGGCGGGAGCCTGTAGTCCCAACTACTCAGGAGGCTGGGGCAGGAGAATCGCTTGAACCCAGAAAGCGGAGGTTGCAGTGACCTGGGATCACACCACTGCACTTCAGCCTGGGCAACAGAGTGAGACTCCATCTC</dnaseq>| | sequence = <dnaseq>AGATTCGACACAAAACCCGGAAGGACCCCGCCGAAGGTTTTCTCCGGTTCGGGAGAGAGACGGAGTCCCGCTCTGTCACGCAGGCTGCCAGGCTGGCGTACAGTGGCGCAATCTCAGCTCGCTGCAACCTCCACCTCCTGGGTTCAAGCGATTTTCTTGCCTCTGCCTCCTGAGTAGCTGGGATTACTGGCACACACCACCATGCACAGTTGCAGGAATTTAGCCAATTCAGAGGTCTTGTTCTCCATAATTTGGAATTTTCCTTCGGATTTGATCAAGTTGGATAGAGTTGGTCAAACCCAATGGGAAAAAGATGAAAACAACAAGAAACAGAAACAAACAGCAACAACAACAACAACAAAAACAGTTAAGTGAAACAAACAAACAATCACACAATTTATGTGGTCACTGAGTGCTCTAATAGTAAGGAGAAATTAAGACCAGCTGGCTGTTAGTCTTAACTCTAGCCAAGACAAAACTCCAATTCAGCTACTTACCTAGTAATGAGTCTCAGGCTGAAGTCTGCTCTCTCCCATCCTAGAAGCAGGAAAAAACTGAAACTCATCTTCCCTGCTGGAAACGAGCTCAAACTCCAGAAAGGAGTTACCTGCCTTCCATCATCATGGACGCAGGAAAATTTGCCTTCCTTGTTGGAAGCAAGTAAAACTCCAAAAAAGGAGTTGCACAGCAAAATAAACTTCAGATCTCAACAAATTTGGGGAGATCAGGGATTCTCTGGGGGTGGGGTGGCTCCCAGGCCTCAGCCAATTGTCCTATTGGTTTCAGCCATAAAGACAGCTCAGGCTGCTACCACGCACTGATAGGAGATTTGTCAAAGATCGAGGCATCTTCACTCAGAATCCCTCTGTGATTACCAATTGTGAACACAAAATATCTGATATGGGTCTCAGTCAATTTAGAAAGTTTATTTTGCCAAGGTTAAGGACACATCCATGACATAGCCTCAGGAGGTTCTGTTGACGTGTGCAAGGTGGTTGGGGCACAGCTTGGTTTTACACATTTTAGGGAGACATGAGATATCAATCAATATATGTTAAGACATATATCAGGTGGTCCAAAAAGGTGGGATGACTGGAAACAGGGAGGGGGCTTCCAGGTGATAGGTAGATAAGAGAAAAACAGTTGCATTCTTTTGAGTTTCTAATAAGCCTTTCACTGAATACACAATTTACAGGACTAATCACTTAAGCCTTAGCCTGGCTCAGTGAAACAACAGGGCAAAGGAAGCAATCAGCTATGCATTTGTCTCACGTGAGCAGAGGGATGACTTTGAGTTCTGTCTAGCTATCTTGTTTAGGAATATAATGAGAGGCAGGTTTGCGTGCAGTTTCCAGATTGACTTTTCCCTTTGGCTTAGTGACTTTGAGGTCCCAAGATTTATTTTCCTTTAACATTTACAAGGAGAAGTGAAGAAATAAGTAAATTAGAGAGCTAGAAGGATGGAAGTTTACAGTTAGAGAGAGTGGGATGTTGAAGGTAATACTGGTTGCATATTTCTTATCCAAAATGCTTGGGACCAGAAGTGTTTCAGATTTCAGATGTTTTCAGATTTTGGAATATTTGCATTATACAGGTTCAGCACCCCTAATCTGAAAACGTGAAATCCAAAATTCTCCAATGATTGTTTCCTTTGAGCATCACAATGGTGCTCAAAAGGTTTTGGATTTTAGAGCATTTCAAATTTCAGATTTTCAGATTAGGGATAATAAACCTATATCTCAGAAACGGTACATTTCTGAATAATGACAAATTGTCATTATTTGCCATGAGAATTGTCATTAATGTGGGTGGAGATGGGGATGATTGTAGGTCAAGAGACTGAAGCAATAGGGTAGGCTTGGGTGTTAGTACGGCCCTTCATGGGAATGTGTTGATGTCATCCAGGGTCACGGGAGGCTTCTGAGTGGGAAGGAAGCTGAGAGCCTATGATTACGGTCTTCACTGATGAAGGCAGACAGTAGGAGGTTGGCAGATGGTGGGCACTGACTAGACTGGAAGTGCCAAGAACTTCAGTGGAGCAAGGTTTTACCCAAGACACAGAGGTTGTGGTCTAGAGCAGCCCAGGGATGAAGGATCACCCATTGGAGAGGACTGTGGGGAAAGCAGAGTCCTGGGAGATGAACCAAGCATCAGTTGAGGCTGGAACAGTTAAAATGTATACATCAAATTCTCTCCAAGGACACTGTACCCTTGGCTGAAAATTCCCTCCTTAGTCTACTTCCCATCCCAAATTCTACCCATCCACACTGTGGCATCCTAGGTCTCTCTAGCAGCTGAACAGGCAGGCCTCTGTAACAACTGTTTCAGCGCTGACTGAGTGGTTAAGTTAAATATTAAAAGTTGAAAGAGCCAGTAACCTTATACAAAGGCTGGAATAGAACAAAAGCCCACCACAAGTTTTTGCCTAAGTCTTTCCTGTGCCTTGAACCATGACAAGAGGAGGAAGGAATTCTTAACCAGACCCATTTAGGATTAAGTAAGTTTTTATTGGCTGGGTACGGTGGCTCACACCTATAATCTCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTCCTGGCCAACATGGTGAAACTCTGTCTCTACTAAAAGTACCAAAATGAGCCAAGCATGGTGGCGGGAGCCTGTAGTCCCAACTACTCAGGAGGCTGGGGCAGGAGAATCGCTTGAACCCAGAAAGCGGAGGTTGCAGTGACCTGGGATCACACCACTGCACTTCAGCCTGGGCAACAGAGTGAGACTCCATCTC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:lnc-GGCT-1]][[Category:NONHSAG047260]][[Category:Transcripts]] | + | [[Category:Antisense]][[Category:lnc-GGCT-1]][[Category:NONHSAG047260]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 18:16, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000581794.1 |
Source |
Gencode19 |
Same with |
lnc-GGCT-1:4,NONHSAT119905 |
Classification |
antisense |
Length |
2795 nt |
Genomic location |
chr7-:30606020..30634385 |
Exon number |
3 |
Exons |
30606020..30608605,30624946..30625095,30634327..30634385 |
Genome context |
|
Sequence |
000001 AGATTCGACA CAAAACCCGG AAGGACCCCG CCGAAGGTTT TCTCCGGTTC GGGAGAGAGA CGGAGTCCCG CTCTGTCACG 000080 000081 CAGGCTGCCA GGCTGGCGTA CAGTGGCGCA ATCTCAGCTC GCTGCAACCT CCACCTCCTG GGTTCAAGCG ATTTTCTTGC 000160 000161 CTCTGCCTCC TGAGTAGCTG GGATTACTGG CACACACCAC CATGCACAGT TGCAGGAATT TAGCCAATTC AGAGGTCTTG 000240 000241 TTCTCCATAA TTTGGAATTT TCCTTCGGAT TTGATCAAGT TGGATAGAGT TGGTCAAACC CAATGGGAAA AAGATGAAAA 000320 000321 CAACAAGAAA CAGAAACAAA CAGCAACAAC AACAACAACA AAAACAGTTA AGTGAAACAA ACAAACAATC ACACAATTTA 000400 000401 TGTGGTCACT GAGTGCTCTA ATAGTAAGGA GAAATTAAGA CCAGCTGGCT GTTAGTCTTA ACTCTAGCCA AGACAAAACT 000480 000481 CCAATTCAGC TACTTACCTA GTAATGAGTC TCAGGCTGAA GTCTGCTCTC TCCCATCCTA GAAGCAGGAA AAAACTGAAA 000560 000561 CTCATCTTCC CTGCTGGAAA CGAGCTCAAA CTCCAGAAAG GAGTTACCTG CCTTCCATCA TCATGGACGC AGGAAAATTT 000640 000641 GCCTTCCTTG TTGGAAGCAA GTAAAACTCC AAAAAAGGAG TTGCACAGCA AAATAAACTT CAGATCTCAA CAAATTTGGG 000720 000721 GAGATCAGGG ATTCTCTGGG GGTGGGGTGG CTCCCAGGCC TCAGCCAATT GTCCTATTGG TTTCAGCCAT AAAGACAGCT 000800 000801 CAGGCTGCTA CCACGCACTG ATAGGAGATT TGTCAAAGAT CGAGGCATCT TCACTCAGAA TCCCTCTGTG ATTACCAATT 000880 000881 GTGAACACAA AATATCTGAT ATGGGTCTCA GTCAATTTAG AAAGTTTATT TTGCCAAGGT TAAGGACACA TCCATGACAT 000960 000961 AGCCTCAGGA GGTTCTGTTG ACGTGTGCAA GGTGGTTGGG GCACAGCTTG GTTTTACACA TTTTAGGGAG ACATGAGATA 001040 001041 TCAATCAATA TATGTTAAGA CATATATCAG GTGGTCCAAA AAGGTGGGAT GACTGGAAAC AGGGAGGGGG CTTCCAGGTG 001120 001121 ATAGGTAGAT AAGAGAAAAA CAGTTGCATT CTTTTGAGTT TCTAATAAGC CTTTCACTGA ATACACAATT TACAGGACTA 001200 001201 ATCACTTAAG CCTTAGCCTG GCTCAGTGAA ACAACAGGGC AAAGGAAGCA ATCAGCTATG CATTTGTCTC ACGTGAGCAG 001280 001281 AGGGATGACT TTGAGTTCTG TCTAGCTATC TTGTTTAGGA ATATAATGAG AGGCAGGTTT GCGTGCAGTT TCCAGATTGA 001360 001361 CTTTTCCCTT TGGCTTAGTG ACTTTGAGGT CCCAAGATTT ATTTTCCTTT AACATTTACA AGGAGAAGTG AAGAAATAAG 001440 001441 TAAATTAGAG AGCTAGAAGG ATGGAAGTTT ACAGTTAGAG AGAGTGGGAT GTTGAAGGTA ATACTGGTTG CATATTTCTT 001520 001521 ATCCAAAATG CTTGGGACCA GAAGTGTTTC AGATTTCAGA TGTTTTCAGA TTTTGGAATA TTTGCATTAT ACAGGTTCAG 001600 001601 CACCCCTAAT CTGAAAACGT GAAATCCAAA ATTCTCCAAT GATTGTTTCC TTTGAGCATC ACAATGGTGC TCAAAAGGTT 001680 001681 TTGGATTTTA GAGCATTTCA AATTTCAGAT TTTCAGATTA GGGATAATAA ACCTATATCT CAGAAACGGT ACATTTCTGA 001760 001761 ATAATGACAA ATTGTCATTA TTTGCCATGA GAATTGTCAT TAATGTGGGT GGAGATGGGG ATGATTGTAG GTCAAGAGAC 001840 001841 TGAAGCAATA GGGTAGGCTT GGGTGTTAGT ACGGCCCTTC ATGGGAATGT GTTGATGTCA TCCAGGGTCA CGGGAGGCTT 001920 001921 CTGAGTGGGA AGGAAGCTGA GAGCCTATGA TTACGGTCTT CACTG |