Difference between revisions of "NONHSAT073163"

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sequence = <dnaseq>ACTCTTCTGCGGGAAGGGCTTGGCGTAGACCGCGCACTGGAAGGCGTGCGCGCAGGTGTGCGTGACCATGTGCTTGAAACGGCAGTAGCGCAGCGAGAAGGATCGCCATCACACGGCGCACTGGTGCGGCTTCTCCCCCGAGTGGATGAACATGTGCTTGGTGTCGTTTTTCCTTGAGCTGAACGTCTTGCAACAGTGGCCGCACGCATAGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTgtagaaagacgggggagcttggagctgcacaaacccaggtctggaactggctccttaccttggaaggtgaatgatcctgccaggactcttagcctccctgggtctcaatttctttatctgtttcatgggaatgaggatctctgctgggtggttgGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATAT</dnaseq>|
 
sequence = <dnaseq>ACTCTTCTGCGGGAAGGGCTTGGCGTAGACCGCGCACTGGAAGGCGTGCGCGCAGGTGTGCGTGACCATGTGCTTGAAACGGCAGTAGCGCAGCGAGAAGGATCGCCATCACACGGCGCACTGGTGCGGCTTCTCCCCCGAGTGGATGAACATGTGCTTGGTGTCGTTTTTCCTTGAGCTGAACGTCTTGCAACAGTGGCCGCACGCATAGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTgtagaaagacgggggagcttggagctgcacaaacccaggtctggaactggctccttaccttggaaggtgaatgatcctgccaggactcttagcctccctgggtctcaatttctttatctgtttcatgggaatgaggatctctgctgggtggttgGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATAT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG028908]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG028908]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 23:30, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT073163

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1092 nt

Genomic location

chr2+:110744557..110752858

Exon number

2

Exons

110744557..110744767,110751978..110752858

Genome context

Sequence
000001 ACTCTTCTGC GGGAAGGGCT TGGCGTAGAC CGCGCACTGG AAGGCGTGCG CGCAGGTGTG CGTGACCATG TGCTTGAAAC 000080
000081 GGCAGTAGCG CAGCGAGAAG GATCGCCATC ACACGGCGCA CTGGTGCGGC TTCTCCCCCG AGTGGATGAA CATGTGCTTG 000160
000161 GTGTCGTTTT TCCTTGAGCT GAACGTCTTG CAACAGTGGC CGCACGCATA GGGCTGACCC CACATTGGAC ACCGCTGCAT 000240
000241 CCATGTCCAT CACACAACAC AGCTGCCGTT TCTTCTGCCT GCTTATGGGA AAGTCCCCTC TTCTCCTCCG TTTTCTTCTC 000320
000321 TTCCTGCCCT ATCACACCGT GCACTTCTCC CTTTCCTTAA AGAACCACCA TCAACTTTAG GAGGAGGGAA AGGGGTGGCT 000400
000401 CTGGCAGGAA AAGCCAGAAT CCCCTCTAGC CAGCAGAGAG AGAGAGGAAT GGCTGCATGT TTTCTCCCCC AGTCCAAGGC 000480
000481 ACTGGGTCTT GGCTGGGTTG AAGGTTCCAA GCTGCTCTCC TGCTGTGTCG GTGAGTTCTG GTCAACCTGC AACCTCCTGA 000560
000561 TATGGCCATT GCAGTTCATC GAGTCTTCAG GGACTCCCCA TGGCCTGGAG TACTTTGCCT TGCTTACACG GGAGAGGAGA 000640
000641 ATGGATTTAT AGAGAACATC ATCTAAATCC AACTTGACCA TTGTGTGGCC ACACTTGCTA GATTGCTATA GTCTAAATCT 000720
000721 AGCATTgtag aaagacgggg gagcttggag ctgcacaaac ccaggtctgg aactggctcc ttaccttgga aggtgaatga 000800
000801 tcctgccagg actcttagcc tccctgggtc tcaatttctt tatctgtttc atgggaatga ggatctctgc tgggtggttg 000880
000881 GGTGATGTGG GGGCTGTGTG AAAACAGCTT GTCAATACAA GCCAAAATAG AAATATTTCT CCACAGAGTA TGAAGGTCAA 000960
000961 ATGAGAGAAT ACATTTAAAT TAAATGGAAA ATTAAAATGG TAAAAAATGC AAAGCTGTAT TGAAAGTTCC GAGCTTCTCT 001040
001041 ATAAGGAGCT TTTTGACTAT GGAAGAATCC TGTACTCGTT CCCCCTAAAT AT
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Predicted Small Protein

Name NONHSAT073163_smProtein_242:379
Length 46
Molecular weight 5356.407
Aromaticity 0.133333333333
Instability index 42.7044444444
Isoelectric point 9.84637451172
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0800085800086
Amino acid sequence MSITQHSCRFFCLLMGKSPLLLRFLLFLPYHTVHFSLSLKNHHQL
Secondary structure LLLLHHHHHHHHHHLLLLHHHHHHHHHLLLLLEEEEELLLLLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii