Difference between revisions of "ENST00000534336.1"

From LncRNAWiki
Jump to: navigation, search
(Created page with "{{basic| tID = ENST00000425295.1| location = chr1+:202780090-202781041| same = lnc-RP11-480I12.4.1-1:4;n363518;KDM5B-AS1(ENST00000425295.1)| classification = intergenic| seque...")
Line 1: Line 1:
 
{{basic|
 
{{basic|
tID = lnc-GREB1-7:1|
+
tID = ENST00000425295.1|
 +
location = chr1+:202780090-202781041|
 +
same = lnc-RP11-480I12.4.1-1:4;n363518;KDM5B-AS1(ENST00000425295.1)|
 
classification = intergenic|
 
classification = intergenic|
location = chr2+:11534106-11543203|
+
sequence = <dnaseq>GACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTGCCCTGGAATGTTTGCTGTCAGATGTCCCCTGTGAAACCCACAAACGCTTGCGATTTGGCCTCCTTGTTTTATTTTGTGTAGTCCTACAACGTCTTGTTACTACCCCCTATTACAACACTTATAACTCAG </dnaseq>|
same = |
 
sequence = <dnaseq>AGAGCCCCAGAGGCAGAGCTGCCCAAGGCTTTGGGAGCCCACCTCTTGCATCACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGACGTGCCCGTGTCCCCTTCCTCCACCACAAGATTGTAAGTTTTCTGGAGCCTCCCCAGAAGCTGAGAAGAAGCTGCTATGCTTCCTGTTCAGCCTGCAGAACCGCCACTTCCAGCATCGATGGTGTCAGGTCAGGTCCTCTGGGTAGAAGAAATGGAGTCAGTTAGGAGTGCTGGAGACTGAGTAAGAGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGC</dnaseq>|
 
}}
 
 
 
{{lnc|
 
tID = lnc-GREB1-7:1|
 
ltID = lnc-GREB1-7:1|
 
gID = lnc-GREB1-7|
 
size = 490 bp|
 
exons =  0|
 
sources = long non-coding rna db - lncrnadb.com|
 
tNames = ENST00000437795.1|
 
gNames = linc00570; Noncoding RNA activating5: ncRNA-a5|
 
sStructure = <html><img src="http://www.lncipedia.org/rnafold/lnc-GREB1-7:1.gif" border="0" width="400" height="400" /></html>|
 
score = -0.946025 (noncoding) |
 
tFrames = 0|
 
fFrames = 0|
 
LCM = yes|
 
LCZ = no|
 
hits = 0|
 
energy = -161.42|
 
PValue = 0.932|
 
prediction = <tab class=wikitable sep=tab head=top>
 
No microRNA targets found with MirTarget2
 
</tab>|
 
 
}}
 
}}
 +
[[Category:Intergenic]]

Revision as of 14:28, 3 June 2014

Basic Information

Transcript ID

ENST00000425295.1

Source

{{{source}}}

Same with

lnc-RP11-480I12.4.1-1:4;n363518;KDM5B-AS1(ENST00000425295.1)

Classification

intergenic

Length

{{{length}}}

Genomic location

chr1+:202780090-202781041

Exon number

{{{number}}}

Exons

{{{exons}}}

Genome context

{{{context}}}

Sequence
000001 GACCTGGGCA ACCCCAGCCT GGAGGTGCCG GGGCCGGAGC TCCCAGAGGG CTGGGTGCGA GGCCTAGGCG GGGTCAGGTT 000080
000081 CGGGTTCCTA GGCCATAGCG GAGCTGCAGC CCAGGCGGCC GGAGCGGAAC CCAGCCCCGC TCCGAGTGCC ACGTCTCCAG 000160
000161 GAACCCCCTC CTTACTCTTG GACAACACTC CGCCCCCGCC CGGGCCTCCG TCCCCCAAAC CGCCCTCATT TGTGCAGCGC 000240
000241 CAGATCCTTC GGACACATCC CTAGGTGTCT CCATCCTCAT TCGGTCCATC CAACTCCCAG ACCTCACGTC AACCGGCTGC 000320
000321 ACCCCACTTT CCAGCCTGCG CCCCAGATCT GCAGCCTTCG CCCCTAGATA CACCCGCCTG GTGATGAGGC GCTCCTCGCG 000400
000401 TTCCTTCCGT CTCCAGTGCA CCGGCTTTCC CTCGTCCTCT GCGCAGTCCA TCTCAGCTCA TCTCTCCAAT TCAATGCCAT 000480
000481 CATCTCTCCT CACCATCTCT CGGTGCCCTG GAATGTTTGC TGTCAGATGT CCCCTGTGAA ACCCACAAAC GCTTGCGATT 000560
000561 TGGCCTCCTT GTTTTATTTT GTGTAGTCCT ACAACGTCTT GTTACTACCC CCTATTACAA CACTTATAAC TCAG
[back to top]