Difference between revisions of "ENST00000553157.1"
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| − | + | ''PCAT6'' | |
==Annotated Information== | ==Annotated Information== | ||
===Name=== | ===Name=== | ||
| − | KDM5BAS1 | + | ''PCAT6'': prostate cancer associated transcript 6 (non-protein coding) |
| + | ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96 | ||
===Characteristics=== | ===Characteristics=== | ||
Revision as of 07:16, 24 June 2016
PCAT6
Contents
Annotated Information
Name
PCAT6: prostate cancer associated transcript 6 (non-protein coding) ncRNA-a2, PCAN-R1, KDM5BAS1, onco-lncRNA-96
Characteristics
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.
Function
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.
Expression
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
ENST00000553157.1 |
| Source |
Gencode19 |
| Same with |
lnc-RP11-480I12.4.1-1:2 |
| Classification |
intergenic |
| Length |
551 nt |
| Genomic location |
chr1+:202780082..202781284 |
| Exon number |
2 |
| Exons |
202780082..202780498,202781151..202781284 |
| Genome context |
|
| Sequence |
000001 AGAGGCCGGA CCTGGGCAAC CCCAGCCTGG AGGTGCCGGG GCCGGAGCTC CCAGAGGGCT GGGTGCGAGG CCTAGGCGGG 000080
000081 GTCAGGTTCG GGTTCCTAGG CCATAGCGGA GCTGCAGCCC AGGCGGCCGG AGCGGAACCC AGCCCCGCTC CGAGTGCCAC 000160 000161 GTCTCCAGGA ACCCCCTCCT TACTCTTGGA CAACACTCCG CCCCCGCCCG GGCCTCCGTC CCCCAAACCG CCCTCATTTG 000240 000241 TGCAGCGCCA GATCCTTCGG ACACATCCCT AGGTGTCTCC ATCCTCATTC GGTCCATCCA ACTCCCAGAC CTCACGTCAA 000320 000321 CCGGCTGCAC CCCACTTTCC AGCCTGCGCC CCAGATCTGC AGCCTTCGCC CCTAGATACA CCCGCCTGGT GATGAGGCGC 000400 000401 TCCTCGCGTT CCTTCCGGCA CGTGGCACAC GCTCCACAAA TATTTGTTGA AAGGGAGGGT AAATGGCCTT GAGTTTCTGT 000480 000481 GGCTACCATT GGCTGAGGAT GGAGCTTTGG GCTGGACAAA GAAGAATCTG GTTGACCACA TGAAGCAGGA A |
