Difference between revisions of "MDC1-AS1"

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(Expression)
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===RefSeq ID===
 
===RefSeq ID===
 
NR_133647
 
NR_133647
 +
===Ensembl ID===
 +
ENSG00000224328
 +
===pubmed IDs===
 +
25514464
 
===Cellular Localization===
 
===Cellular Localization===
 
MDC1-AS and MDC1 were exist primarily in the nuclear fraction <ref name="ref1" />.
 
MDC1-AS and MDC1 were exist primarily in the nuclear fraction <ref name="ref1" />.
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</references>
 
</references>
===Ensembl ID===
+
 
ENSG00000224328
 
===pubmed IDs===
 
25514464
 
 
===Sequence===
 
===Sequence===
 
>gi|949474747|ref|NR_133647.1| Homo sapiens MDC1 antisense RNA 1 (MDC1-AS1), long non-coding RNA
 
>gi|949474747|ref|NR_133647.1| Homo sapiens MDC1 antisense RNA 1 (MDC1-AS1), long non-coding RNA
 
<dnaseq>CACTATATCGGTCTGTCATCATCCCTTGGCCTCTCACCTGATGCAGCCAGTCCAGGGACAGAATGGGGATTCCCCGCCCCAGGGCACACAGGAACTTGACTGTCCGGCGGATGCGATCAGTGACCAGACACCTGATGCTTCTTTATATGTATAATGGCTGACCCTGGCGGGACTTCCTTCTCCACTTGTGTGTTGATGTCCACTGTGGTGGAGGCTTGGCTTCTCTCCAGGTGGATCCCAGATGTGCCAAAGTCAGCGCTGCTGAGACTTCTTCCTCGTCATCTGTATCGCTGTTGATAACCATGGAAGCTTGGCTTTTCTCCAGAGGGACAGCCTGTGGGGCCTTGCCTTCTTCCACATCTGTATCACTACCAGCCTGGCTCTCCTGCAGATGGGCCAGGCCTGGTGCTCCAGGACCCCTTGTACCTACTCCATGGAAGATCTTCCTCTTCTTCATAGGAATGACAACTGGGGTTGCTGGGATCCTCTCTTCTTCCGCATCAGTGTCGCTGTCGATGAAGCCAAAAGGCTGAGCCCTTTCCAAATGGACCTCAGCTGGCCTTCCAGGAGGCCTGCTGTCATCATCCACATCTGTGTCACTGTCCTCTCCAGGAGGTTGGCTCCTCTCCAGAATCACCCCAGCTGGAACCACCCCATTCCCTGCACCCCTCTTGACTTTTGTATCATTGTCCCTCTCCTTCACTAAAGGCTGATCCTTTTCAAGCTGGATTTCAGTTA</dnaseq>
 
<dnaseq>CACTATATCGGTCTGTCATCATCCCTTGGCCTCTCACCTGATGCAGCCAGTCCAGGGACAGAATGGGGATTCCCCGCCCCAGGGCACACAGGAACTTGACTGTCCGGCGGATGCGATCAGTGACCAGACACCTGATGCTTCTTTATATGTATAATGGCTGACCCTGGCGGGACTTCCTTCTCCACTTGTGTGTTGATGTCCACTGTGGTGGAGGCTTGGCTTCTCTCCAGGTGGATCCCAGATGTGCCAAAGTCAGCGCTGCTGAGACTTCTTCCTCGTCATCTGTATCGCTGTTGATAACCATGGAAGCTTGGCTTTTCTCCAGAGGGACAGCCTGTGGGGCCTTGCCTTCTTCCACATCTGTATCACTACCAGCCTGGCTCTCCTGCAGATGGGCCAGGCCTGGTGCTCCAGGACCCCTTGTACCTACTCCATGGAAGATCTTCCTCTTCTTCATAGGAATGACAACTGGGGTTGCTGGGATCCTCTCTTCTTCCGCATCAGTGTCGCTGTCGATGAAGCCAAAAGGCTGAGCCCTTTCCAAATGGACCTCAGCTGGCCTTCCAGGAGGCCTGCTGTCATCATCCACATCTGTGTCACTGTCCTCTCCAGGAGGTTGGCTCCTCTCCAGAATCACCCCAGCTGGAACCACCCCATTCCCTGCACCCCTCTTGACTTTTGTATCATTGTCCCTCTCCTTCACTAAAGGCTGATCCTTTTCAAGCTGGATTTCAGTTA</dnaseq>

Revision as of 03:12, 5 September 2016

Annotated Information

Approved Symbol

MDC1-AS1

Approved Name

MDC1 antisense RNA 1

Synonyms

MDC1-AS

Chromosome

6p21.33

RefSeq ID

NR_133647

Ensembl ID

ENSG00000224328

pubmed IDs

25514464

Cellular Localization

MDC1-AS and MDC1 were exist primarily in the nuclear fraction [1].

Function

MDC1-AS, which may participate in bladder cancer through up-regulation of its antisense tumor-suppressing gene MDC1 [1]

Expression

Dysregulation of MDC1-AS and MDC1 expression level' [1].

The expression levels of MDC1-AS was down-regulated in bladder cancer [1].

There is a remarkably inhibitory role of antisense lncRNA MDC1-AS on malignant cell behaviors in bladder cancer cells EJ and T24, which knockdown of MDC1 revealed that suppressing role of MDC1-AS was attributed to up-regulation of MDC1 [1].

Experiment Primer Forward primer Reverse primer
RT-PCR MDC1-AS 5'-TCCCAGATGTGCCAAAGTCAG-3' 5'-AGCAACCCCAGTTGTCATTC-3'[1]
MDC1 5'-GCAGCTTCCAGACAACAG-3' 5'-TACCCATGACTTTATCCACA-3'[1]
GAPDH 5'-AAGGTGAAGGTCGGAGTCAAC-3' 5'-GGGGTCATTGATGGCAACAATA-3' [1]
RNAi siMDC1 5'-GCGGCUACAUAUCUUUAGUTT-3' 5'-ACUAAAGAUAUGUAGCCGCTT-3'[1]

Diseases

MDC1-AS may act as a tumor suppressor in bladder cancer [1].

Labs working on this lncRNA

  • Department of Environmental Genomics, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, Nanjing Medical University, Nanjing, China

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Ji, P., Diederichs, S., Wang, W., Boing, S., Metzger, R., Schneider, P.M., Tidow, N., Brandt, B., Buerger, H., Bulk, E. et al. (2003) MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene, 22, 8031-8041.

Sequence

>gi|949474747|ref|NR_133647.1| Homo sapiens MDC1 antisense RNA 1 (MDC1-AS1), long non-coding RNA

000001 CACTATATCG GTCTGTCATC ATCCCTTGGC CTCTCACCTG ATGCAGCCAG TCCAGGGACA GAATGGGGAT TCCCCGCCCC 000080
000081 AGGGCACACA GGAACTTGAC TGTCCGGCGG ATGCGATCAG TGACCAGACA CCTGATGCTT CTTTATATGT ATAATGGCTG 000160
000161 ACCCTGGCGG GACTTCCTTC TCCACTTGTG TGTTGATGTC CACTGTGGTG GAGGCTTGGC TTCTCTCCAG GTGGATCCCA 000240
000241 GATGTGCCAA AGTCAGCGCT GCTGAGACTT CTTCCTCGTC ATCTGTATCG CTGTTGATAA CCATGGAAGC TTGGCTTTTC 000320
000321 TCCAGAGGGA CAGCCTGTGG GGCCTTGCCT TCTTCCACAT CTGTATCACT ACCAGCCTGG CTCTCCTGCA GATGGGCCAG 000400
000401 GCCTGGTGCT CCAGGACCCC TTGTACCTAC TCCATGGAAG ATCTTCCTCT TCTTCATAGG AATGACAACT GGGGTTGCTG 000480
000481 GGATCCTCTC TTCTTCCGCA TCAGTGTCGC TGTCGATGAA GCCAAAAGGC TGAGCCCTTT CCAAATGGAC CTCAGCTGGC 000560
000561 CTTCCAGGAG GCCTGCTGTC ATCATCCACA TCTGTGTCAC TGTCCTCTCC AGGAGGTTGG CTCCTCTCCA GAATCACCCC 000640
000641 AGCTGGAACC ACCCCATTCC CTGCACCCCT CTTGACTTTT GTATCATTGT CCCTCTCCTT CACTAAAGGC TGATCCTTTT 000720
000721 CAAGCTGGAT TTCAGTTA

Predicted Small Protein

Name MDC1-AS1_smProtein_302:532
Length 76
Molecular weight 7927.2718
Aromaticity 0.105263157895
Instability index 48.4697368421
Isoelectric point 10.3208618164
Runs 14
Runs residual 0.0428009679371
Runs probability 0.0466033260151
Amino acid sequence MEAWLFSRGTACGALPSSTSVSLPAWLSCRWARPGAPGPLVPTPWKIFLFFIGMTTGVAG
ILSSSASVSLSMKPKG
Secondary structure LEEEEELLLEELLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHH
EEELLLEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
HHLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT
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