Difference between revisions of "LINC01826"

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(Created page with "==Annotated Information== ===Approved Symbol=== LINC01826 ===Approved Name=== long intergenic non-protein coding RNA 1826 ===Previous Symbols=== _ ===Synonyms=== lnc-MKI67IP-3...")
 
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==Annotated Information==
 
==Annotated Information==
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===Approved Symbol===
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===Name===
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LINC01826
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LINC01826:long intergenic non-protein coding RNA 1826
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===Approved Name===
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long intergenic non-protein coding RNA 1826
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lnc-MKI67IP-3<ref name="ref1" />
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===Previous Symbols===
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===Characteristics===
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_
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Lnc-MKI67IP-3 is located on chromosome 2 and its function has not been described thus far.<ref name="ref1" />
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===Synonyms===
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lnc-MKI67IP-3
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===Cellular Localization===
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===Chromosome===
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Lnc-MKI67IP-3 is primarily localized in the cytoplasm.<ref name="ref1" /> 
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2q14.3
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===Function===
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===RefSeq ID===
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[[File:LncRNA-MKI167-3.JPG|right|thumb|400px|'''Lnc-MKI67IP-3 could bind to let-7e as a miRNA sponge''' <ref name="ref1" />.]]
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_
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The present study shows a strong correlation between lnc-MKI67IP-3 and let-7e or IκBβ. The minimum free energy (MFE) between let-7e and the let-7e binding site in lnc-MKI67IP-3 is −17.8 kcal/mol. In addition, Lnc-MKI67IP-3 could inhibit the pro-inflammatory effects of let-7e as a ceRNA through binding to let-7e in the cytoplasm.<ref name="ref1" />
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===OMIM ID===
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_
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===Regulation===
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===RefSeq(supplied by NCBI)===
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Let-7e mimic significantly down-regulate lnc-MKI67IP-3 expression, while let-7e inhibitor markedly up-regulate this expression and let-7e inhibitor could be considered as an inducer of lnc-MKI67IP-3, just like vitamin C.<ref name="ref1" />
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XR_001739207
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===Diseases===
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===pubmed IDs===
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Inflammatory response in vascular endothelial cells<ref name="ref1" />
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28195197
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===Expression===
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In human umbilical vein endothelial cells (HUVECs) treated with ox-LDL for different times, lnc-MKI67IP-3 is significantly down-regulated. <ref name="ref1" />
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===Sequence===
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>XR_001739207.1 PREDICTED: Homo sapiens uncharacterized LOC107985818 (LOC107985818), ncRNA
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<dnaseq>CTGAACGCTAAGAACAACAGAACGTAAGACTGACAGTTGACTTATCATAATGATATCCTTCTTTCCCATT
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GAAAAAATGTAGTTGATGAGAAGTGTCTGCTTCCATTGCCCGTGAATCCCTAACAGAATGGTGCCAGGCT
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CCACCAGGAGACCTTCCTGAGTCCCATCTGAAAGCCTCCACCTGAATGCGTCCCTCATTTTAATGACCCA
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GCCAGGCTACCTCTGAAGAGAAGGGCAGTTCTCAGCAGCCTGAGGGGTGCTGGTAGAGACATACCAAAAG
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TGTTGTTGGTGCCACCTTTTTGCAAGAGATGAAGAGAAAGTTCC</dnaseq>
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==Labs working on this lncRNA==
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*The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Ministry of Public Health; The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine; Qilu Hospital, Shandong University, Jinan, China.
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==References==
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<references>
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<ref name="ref1">
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Lin Z, Ge J, Wang Z, Ren J, Wang X, Xiong H, Gao J, Zhang Y, Zhang Q. Let-7e
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modulates the inflammatory response in vascular endothelial cells through ceRNA
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crosstalk. Sci Rep. 2017 Feb 14;7:42498.
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</ref>
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</references>

Revision as of 08:46, 28 August 2017

Annotated Information

Name

LINC01826:long intergenic non-protein coding RNA 1826

lnc-MKI67IP-3[1]

Characteristics

Lnc-MKI67IP-3 is located on chromosome 2 and its function has not been described thus far.[1]

Cellular Localization

Lnc-MKI67IP-3 is primarily localized in the cytoplasm.[1]

Function

Lnc-MKI67IP-3 could bind to let-7e as a miRNA sponge [1].

The present study shows a strong correlation between lnc-MKI67IP-3 and let-7e or IκBβ. The minimum free energy (MFE) between let-7e and the let-7e binding site in lnc-MKI67IP-3 is −17.8 kcal/mol. In addition, Lnc-MKI67IP-3 could inhibit the pro-inflammatory effects of let-7e as a ceRNA through binding to let-7e in the cytoplasm.[1]

Regulation

Let-7e mimic significantly down-regulate lnc-MKI67IP-3 expression, while let-7e inhibitor markedly up-regulate this expression and let-7e inhibitor could be considered as an inducer of lnc-MKI67IP-3, just like vitamin C.[1]

Diseases

Inflammatory response in vascular endothelial cells[1]

Expression

In human umbilical vein endothelial cells (HUVECs) treated with ox-LDL for different times, lnc-MKI67IP-3 is significantly down-regulated. [1]

Sequence

>XR_001739207.1 PREDICTED: Homo sapiens uncharacterized LOC107985818 (LOC107985818), ncRNA

000001 CTGAACGCTA AGAACAACAG AACGTAAGAC TGACAGTTGA CTTATCATAA TGATATCCTT CTTTCCCATT GAAAAAATGT 000080
000081 AGTTGATGAG AAGTGTCTGC TTCCATTGCC CGTGAATCCC TAACAGAATG GTGCCAGGCT CCACCAGGAG ACCTTCCTGA 000160
000161 GTCCCATCTG AAAGCCTCCA CCTGAATGCG TCCCTCATTT TAATGACCCA GCCAGGCTAC CTCTGAAGAG AAGGGCAGTT 000240
000241 CTCAGCAGCC TGAGGGGTGC TGGTAGAGAC ATACCAAAAG TGTTGTTGGT GCCACCTTTT TGCAAGAGAT GAAGAGAAAG 000320
000321 TTCC

Labs working on this lncRNA

  • The Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Ministry of Public Health; The State and Shandong Province Joint Key Laboratory of Translational Cardiovascular Medicine; Qilu Hospital, Shandong University, Jinan, China.

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Lin Z, Ge J, Wang Z, Ren J, Wang X, Xiong H, Gao J, Zhang Y, Zhang Q. Let-7e modulates the inflammatory response in vascular endothelial cells through ceRNA crosstalk. Sci Rep. 2017 Feb 14;7:42498.
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