Difference between revisions of "LNCPRESS1"

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(Created page with "==Annotated Information== ===Approved Symbol=== LNCPRESS1 ===Approved Name=== lncRNA p53 regulated and ESC associated 1 ===Previous Symbols=== _ ===Synonyms=== lncPRESS1 ===Ch...")
 
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==Annotated Information==
 
==Annotated Information==
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===Approved Symbol===
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===Name===
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LNCPRESS1
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LNCPRESS1:lncRNA p53 regulated and ESC associated 1
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===Approved Name===
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lncRNA p53 regulated and ESC associated 1
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===Characteristics===
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===Previous Symbols===
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LncPRESS1 is a intergenic transcript annotated by Ensemble as ENSG00000232301, including 756-nt-long multi-exonic.<ref name="ref1" />
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_
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===Synonyms===
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===Cellular Localization===
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lncPRESS1
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RNA fractionation analysis reveals that lncPRESS1 is primarily localized to nucleus.<ref name="ref1" />
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===Chromosome===
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7q22.1
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===Function===
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===RefSeq ID===
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[[
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_
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Depletion of lncPRESS1 significantly induces expression of lineage-specific genesPAX6,HOXA1, andHOTAIRM1(ectoderm) andFOXA2(ecto/endo-derm), with less or no significant activation of genes associated with endo/mesoderm-specific lineages. In addition, Functional annotation analysis shows that lncPRESS1-activated genes have stem-cell-related functions, whereas genes repressed by lncPRESS1 are collectively represented by functional categories related to cell fate commitment and ectodermdifferentiation. Taken together, LncPRESS1 maintains the pluripotent status of hESCs(human Embryonic stem cells): depletion of lncPRESS1 compromises pluripotency and spontaneous differentiation. <ref name="ref1" />
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===OMIM ID===
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===Regulation===
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_
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Nuclear lncPRESS1 is regulated by p53-dependent alterations in chromatin state during differentiation of hESCs(human Embryonic stem cells).<ref name="ref1" />
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===RefSeq(supplied by NCBI)===
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===Expression===
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XR_242321
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[[
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===pubmed IDs===
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The expression of lncPRESS1 starts as early as the oocyte stage and is sustained to the morulae stage, with much higher expression in hESCs(human Embryonic stem cells). This lncPRESS1 expression pattern suggests that lncPRESS1 is highly enriched in the early stages of human embryonic development. In addition, expression of lncPRESS1 is coordinated with pluripotency-specific genes and repression of lncPRESS1 during differentiation is largely controlled by p53.<ref name="ref1" />
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27912097
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===Sequence===
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>NR_146480.1 Homo sapiens lncRNA p53 regulated and ESC associated 1 (LNCPRESS1), long non-coding RNA
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<dnaseq>ACTTGGGACCCCGTTTCCACCCAGGACCACAGGCTCAAGATGGCCTGGTAGATGCAGCCGGCACGCGCCT
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CTCCTCCGACGGGAACAGAAGGAGCCGGTAGGTTTTCACACTTGCAGCAGATCCGCTAAGAGAACGAGGG
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ATTCAGCCGAGAAGCCACTGGGAGCCCGAGGAGTGGAGCAGAGGCACCCAGGCAGCCTGCGCGGAGAAAT
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CGGATCGGCTGGGACGGCCTGCAGCCCCCGCGCGCGGGGAAAGGGAAGAAGTCCTCCCCTACAAAGCGAA
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TTCACAAACGGAAGAAGTGACTGTTCCACAGGATGCGCAGATCTCAACGGAAGGACCCAGGAGACATGAA
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AAAGCAAGGAAATGTGACGCCTTCAGAAGAAACCAGTAATTCTCCAGCAACAGATCCCCATCCAAAAGAA
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ATTCAGGAAAGCTCAAACAGAGAATTGAGCAGAGAATTGACCGGACTGATTGTAAAGAAGGTCATCAACA
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TGGAAGAGTCTTTTGAACAACAACATAAAGAAATGAGGAAAAGAGGTGGGGAGATATATGAGATGATTAC
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CTGCCAGAAAGAGGTTTTAAAATTCAACAGAAGAGTATTTCTGGAACTGAAGAAATCATTGGATGAAATA
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CAAAGTACACTCAAAAGCTTCAATGATAGACTAGAACAAATAGAAGAAAAACTCTCAGGGCATAAAATCT
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GAAGCATTTTTCTCACTTTAAAGATTCATGGGTTGTACTCTGGCCATTAATGTGAACAAAACCTGCTGGG
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TTAGTTCTTATTCTGGGGTCTTGGGTAATCGTTAGAGCGAAATAAAAATAATTTCCCTTAGA</dnaseq>
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==Labs working on this lncRNA==
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*Department of Epigenetics and Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Center for Stem Cell and Development Biology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Center for Cancer Epigenetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
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==References==
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<references>
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<ref name="ref1">
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Jain AK, Xi Y, McCarthy R, Allton K, Akdemir KC, Patel LR, Aronow B, Lin C, Li
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W, Yang L, Barton MC. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards
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Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. Mol
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Cell. 2016 Dec 1;64(5):967-981.
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</ref>
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</references>

Revision as of 02:40, 24 October 2017

Annotated Information

Name

LNCPRESS1:lncRNA p53 regulated and ESC associated 1

Characteristics

LncPRESS1 is a intergenic transcript annotated by Ensemble as ENSG00000232301, including 756-nt-long multi-exonic.[1]

Cellular Localization

RNA fractionation analysis reveals that lncPRESS1 is primarily localized to nucleus.[1]

Function

[[ Depletion of lncPRESS1 significantly induces expression of lineage-specific genesPAX6,HOXA1, andHOTAIRM1(ectoderm) andFOXA2(ecto/endo-derm), with less or no significant activation of genes associated with endo/mesoderm-specific lineages. In addition, Functional annotation analysis shows that lncPRESS1-activated genes have stem-cell-related functions, whereas genes repressed by lncPRESS1 are collectively represented by functional categories related to cell fate commitment and ectodermdifferentiation. Taken together, LncPRESS1 maintains the pluripotent status of hESCs(human Embryonic stem cells): depletion of lncPRESS1 compromises pluripotency and spontaneous differentiation. [1]

Regulation

Nuclear lncPRESS1 is regulated by p53-dependent alterations in chromatin state during differentiation of hESCs(human Embryonic stem cells).[1]

Expression

[[ The expression of lncPRESS1 starts as early as the oocyte stage and is sustained to the morulae stage, with much higher expression in hESCs(human Embryonic stem cells). This lncPRESS1 expression pattern suggests that lncPRESS1 is highly enriched in the early stages of human embryonic development. In addition, expression of lncPRESS1 is coordinated with pluripotency-specific genes and repression of lncPRESS1 during differentiation is largely controlled by p53.[1]

Sequence

>NR_146480.1 Homo sapiens lncRNA p53 regulated and ESC associated 1 (LNCPRESS1), long non-coding RNA

000001 ACTTGGGACC CCGTTTCCAC CCAGGACCAC AGGCTCAAGA TGGCCTGGTA GATGCAGCCG GCACGCGCCT CTCCTCCGAC 000080
000081 GGGAACAGAA GGAGCCGGTA GGTTTTCACA CTTGCAGCAG ATCCGCTAAG AGAACGAGGG ATTCAGCCGA GAAGCCACTG 000160
000161 GGAGCCCGAG GAGTGGAGCA GAGGCACCCA GGCAGCCTGC GCGGAGAAAT CGGATCGGCT GGGACGGCCT GCAGCCCCCG 000240
000241 CGCGCGGGGA AAGGGAAGAA GTCCTCCCCT ACAAAGCGAA TTCACAAACG GAAGAAGTGA CTGTTCCACA GGATGCGCAG 000320
000321 ATCTCAACGG AAGGACCCAG GAGACATGAA AAAGCAAGGA AATGTGACGC CTTCAGAAGA AACCAGTAAT TCTCCAGCAA 000400
000401 CAGATCCCCA TCCAAAAGAA ATTCAGGAAA GCTCAAACAG AGAATTGAGC AGAGAATTGA CCGGACTGAT TGTAAAGAAG 000480
000481 GTCATCAACA TGGAAGAGTC TTTTGAACAA CAACATAAAG AAATGAGGAA AAGAGGTGGG GAGATATATG AGATGATTAC 000560
000561 CTGCCAGAAA GAGGTTTTAA AATTCAACAG AAGAGTATTT CTGGAACTGA AGAAATCATT GGATGAAATA CAAAGTACAC 000640
000641 TCAAAAGCTT CAATGATAGA CTAGAACAAA TAGAAGAAAA ACTCTCAGGG CATAAAATCT GAAGCATTTT TCTCACTTTA 000720
000721 AAGATTCATG GGTTGTACTC TGGCCATTAA TGTGAACAAA ACCTGCTGGG TTAGTTCTTA TTCTGGGGTC TTGGGTAATC 000800
000801 GTTAGAGCGA AATAAAAATA ATTTCCCTTA GA

Labs working on this lncRNA

  • Department of Epigenetics and Molecular Carcinogenesis, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Center for Stem Cell and Development Biology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Center for Cancer Epigenetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

References

  1. ↑ 1.0 1.1 1.2 1.3 1.4 Jain AK, Xi Y, McCarthy R, Allton K, Akdemir KC, Patel LR, Aronow B, Lin C, Li W, Yang L, Barton MC. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. Mol Cell. 2016 Dec 1;64(5):967-981.
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