Difference between revisions of "ENST00000553157.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
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[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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| + | {{lncrnadb| | ||
| + | tID = ENST00000553157.1| | ||
| + | ltID = KDM5BAS1| | ||
| + | ann = <tab class=wikitable sep=tab head=top> | ||
| + | Section Description | ||
| + | ID KDM5BAS1 | ||
| + | Characteristics Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product. | ||
| + | Expression Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues. | ||
| + | Function KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand. | ||
| + | </tab>| | ||
| + | }} | ||
Revision as of 10:31, 6 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000553157.1 |
| Source |
Gencode19 |
| Same with |
lnc-RP11-480I12.4.1-1:2 |
| Classification |
intergenic |
| Length |
551 nt |
| Genomic location |
chr1+:202780082..202781284 |
| Exon number |
2 |
| Exons |
202780082..202780498,202781151..202781284 |
| Genome context |
|
| Sequence |
000001 AGAGGCCGGA CCTGGGCAAC CCCAGCCTGG AGGTGCCGGG GCCGGAGCTC CCAGAGGGCT GGGTGCGAGG CCTAGGCGGG 000080
000081 GTCAGGTTCG GGTTCCTAGG CCATAGCGGA GCTGCAGCCC AGGCGGCCGG AGCGGAACCC AGCCCCGCTC CGAGTGCCAC 000160 000161 GTCTCCAGGA ACCCCCTCCT TACTCTTGGA CAACACTCCG CCCCCGCCCG GGCCTCCGTC CCCCAAACCG CCCTCATTTG 000240 000241 TGCAGCGCCA GATCCTTCGG ACACATCCCT AGGTGTCTCC ATCCTCATTC GGTCCATCCA ACTCCCAGAC CTCACGTCAA 000320 000321 CCGGCTGCAC CCCACTTTCC AGCCTGCGCC CCAGATCTGC AGCCTTCGCC CCTAGATACA CCCGCCTGGT GATGAGGCGC 000400 000401 TCCTCGCGTT CCTTCCGGCA CGTGGCACAC GCTCCACAAA TATTTGTTGA AAGGGAGGGT AAATGGCCTT GAGTTTCTGT 000480 000481 GGCTACCATT GGCTGAGGAT GGAGCTTTGG GCTGGACAAA GAAGAATCTG GTTGACCACA TGAAGCAGGA A |
Annotation (From lncRNAdb)
| Section | Description |
|---|---|
| ID | KDM5BAS1 |
| Characteristics | Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product. |
| Expression | Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues. |
| Function | KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand. |
