Difference between revisions of "ENST00000456327.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGTCTGGCTGGAGCTGGACCGGCTGGTGGCGCCAGGCAGTGCCAAGCACCCCTGGCAGCCCTGCAGAGGGTTCTCAAATCCAGATTTCATTCTGCAGTCCCGGCAGTGTTTTGACGACTGCCTCACTAAAGGAAGCTAAAAGCTGTGCTGATGCCTCCCAGACGAGCCTCGTTGGAAGCACAGAACCTTCACGGCTCGGAGCCGCTGACACCGTGACAAAGGGAGCCCTGCTCAGGAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTACCTCTGCCTTAGGATTGCCTGATGGCCTGTGCCATTCCATGTTATATCTACTGATTTGCTCCCTGTATTCAAAGATTTTTTTTTTTTACTTAATTCTCTCTTACTGACCCTGAGAGTGACCATATTTTTAACCAATTTGGTCTTCAGCCTCAAAACTTAGCTCTTTCCTTTTGTGGTCCCCGAATCCTATCACGTGTCATGGTGGCTGTGAAGATGTTTGCCAAGCCTGCTGAGAAGGCTCATCTGTGGCATCCAAAAGCAGAGATTTCAACTCTGGACCCCTGTGACCTGCCTTTGTAATTATGGATACCCAGCACTGTTTTGAAATATCAGTGGACATCCAGTTTTTAAAAGCCCTCAGAGCTTTGGGAGACACCCCTTTATCTCTCTGGCATGTCAGAGAACCGATTCAACCCTTCTCATCTCCTCCTCCTTCCCTCTCTTGGGCCATCAGGATGCGGCAGCAACTCACTGTGCATGTTTTTACAGCTCTTCTCCAGTAATGCTGCCATTTCCACTGCAGACCACAGGATAAAAGGACCGCTTCACCGTGGCCCAGGATACCCTTTTAAGTAGGAGAGGGAGAAGAAAGTACTGCTTTGATCTAAAATTAAGCAAACGTTCTTCAATAAACCCACCATGAGACTTGACCACTAATGGTGACCAGCAGTGGCTTTGTCATGGCCCTGCCCACTGGGGGCAGGCACATGCCGGGGCCAGGGCAGGCTGCCAGCTGGAATAAAAACCTGACCATTAGACCGAGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCACCATGAGCCAGATCAAGGAAAGAGACAGGAAAGCAGATGATTTTACCTGCCTTCCCTAAGTGCACTCGGGAAGAGAAGGATCATCTCAAAAAGGGTTAAGGAATGAGATCATGGAAATCACTTACACACGCGGTCGCGGCTTGGACTTGGCTAGTGAGGCCGGCCTGCCCACTCTGCTTCCATTCACTCAGACACAGCTTGGGCTTTTCCTCCAAGTGCTGGTAGCAGTCATTTATGAGGGAGGAAAGGAGCAGAATAAACACACTTCTCAGC</dnaseq>| | sequence = <dnaseq>AGTCTGGCTGGAGCTGGACCGGCTGGTGGCGCCAGGCAGTGCCAAGCACCCCTGGCAGCCCTGCAGAGGGTTCTCAAATCCAGATTTCATTCTGCAGTCCCGGCAGTGTTTTGACGACTGCCTCACTAAAGGAAGCTAAAAGCTGTGCTGATGCCTCCCAGACGAGCCTCGTTGGAAGCACAGAACCTTCACGGCTCGGAGCCGCTGACACCGTGACAAAGGGAGCCCTGCTCAGGAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTACCTCTGCCTTAGGATTGCCTGATGGCCTGTGCCATTCCATGTTATATCTACTGATTTGCTCCCTGTATTCAAAGATTTTTTTTTTTTACTTAATTCTCTCTTACTGACCCTGAGAGTGACCATATTTTTAACCAATTTGGTCTTCAGCCTCAAAACTTAGCTCTTTCCTTTTGTGGTCCCCGAATCCTATCACGTGTCATGGTGGCTGTGAAGATGTTTGCCAAGCCTGCTGAGAAGGCTCATCTGTGGCATCCAAAAGCAGAGATTTCAACTCTGGACCCCTGTGACCTGCCTTTGTAATTATGGATACCCAGCACTGTTTTGAAATATCAGTGGACATCCAGTTTTTAAAAGCCCTCAGAGCTTTGGGAGACACCCCTTTATCTCTCTGGCATGTCAGAGAACCGATTCAACCCTTCTCATCTCCTCCTCCTTCCCTCTCTTGGGCCATCAGGATGCGGCAGCAACTCACTGTGCATGTTTTTACAGCTCTTCTCCAGTAATGCTGCCATTTCCACTGCAGACCACAGGATAAAAGGACCGCTTCACCGTGGCCCAGGATACCCTTTTAAGTAGGAGAGGGAGAAGAAAGTACTGCTTTGATCTAAAATTAAGCAAACGTTCTTCAATAAACCCACCATGAGACTTGACCACTAATGGTGACCAGCAGTGGCTTTGTCATGGCCCTGCCCACTGGGGGCAGGCACATGCCGGGGCCAGGGCAGGCTGCCAGCTGGAATAAAAACCTGACCATTAGACCGAGCGTGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCACCATGAGCCAGATCAAGGAAAGAGACAGGAAAGCAGATGATTTTACCTGCCTTCCCTAAGTGCACTCGGGAAGAGAAGGATCATCTCAAAAAGGGTTAAGGAATGAGATCATGGAAATCACTTACACACGCGGTCGCGGCTTGGACTTGGCTAGTGAGGCCGGCCTGCCCACTCTGCTTCCATTCACTCAGACACAGCTTGGGCTTTTCCTCCAAGTGCTGGTAGCAGTCATTTATGAGGGAGGAAAGGAGCAGAATAAACACACTTCTCAGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-SOX11-3]] |
Revision as of 09:18, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000456327.1 |
| Source |
Gencode19 |
| Same with |
lnc-SOX11-3:1,NONHSAT068824 |
| Classification |
intergenic |
| Length |
1434 nt |
| Genomic location |
chr2+:6072819..6120819 |
| Exon number |
5 |
| Exons |
6072819..6073053,6108718..6109370,6109462..6109618,6113441..6113561,6120552..6120819 |
| Genome context |
|
| Sequence |
000001 AGTCTGGCTG GAGCTGGACC GGCTGGTGGC GCCAGGCAGT GCCAAGCACC CCTGGCAGCC CTGCAGAGGG TTCTCAAATC 000080
000081 CAGATTTCAT TCTGCAGTCC CGGCAGTGTT TTGACGACTG CCTCACTAAA GGAAGCTAAA AGCTGTGCTG ATGCCTCCCA 000160 000161 GACGAGCCTC GTTGGAAGCA CAGAACCTTC ACGGCTCGGA GCCGCTGACA CCGTGACAAA GGGAGCCCTG CTCAGGAGAA 000240 000241 AGAGCAAATG AGAGGCAGTT GCACTTTTTC AGGTGTCAGG CTGGAGGAAG CCACTTGAAG ATGAATCTAC CTCTGCCTTA 000320 000321 GGATTGCCTG ATGGCCTGTG CCATTCCATG TTATATCTAC TGATTTGCTC CCTGTATTCA AAGATTTTTT TTTTTTACTT 000400 000401 AATTCTCTCT TACTGACCCT GAGAGTGACC ATATTTTTAA CCAATTTGGT CTTCAGCCTC AAAACTTAGC TCTTTCCTTT 000480 000481 TGTGGTCCCC GAATCCTATC ACGTGTCATG GTGGCTGTGA AGATGTTTGC CAAGCCTGCT GAGAAGGCTC ATCTGTGGCA 000560 000561 TCCAAAAGCA GAGATTTCAA CTCTGGACCC CTGTGACCTG CCTTTGTAAT TATGGATACC CAGCACTGTT TTGAAATATC 000640 000641 AGTGGACATC CAGTTTTTAA AAGCCCTCAG AGCTTTGGGA GACACCCCTT TATCTCTCTG GCATGTCAGA GAACCGATTC 000720 000721 AACCCTTCTC ATCTCCTCCT CCTTCCCTCT CTTGGGCCAT CAGGATGCGG CAGCAACTCA CTGTGCATGT TTTTACAGCT 000800 000801 CTTCTCCAGT AATGCTGCCA TTTCCACTGC AGACCACAGG ATAAAAGGAC CGCTTCACCG TGGCCCAGGA TACCCTTTTA 000880 000881 AGTAGGAGAG GGAGAAGAAA GTACTGCTTT GATCTAAAAT TAAGCAAACG TTCTTCAATA AACCCACCAT GAGACTTGAC 000960 000961 CACTAATGGT GACCAGCAGT GGCTTTGTCA TGGCCCTGCC CACTGGGGGC AGGCACATGC CGGGGCCAGG GCAGGCTGCC 001040 001041 AGCTGGAATA AAAACCTGAC CATTAGACCG AGCGTGGTGG CTCACGCCTG TAATCCCAAC ACTTTGGGAG GCCGAGGCAG 001120 001121 GCGGATCACC TGAGGTCAGG AGTTTGAGAC CAGCCTGGCC ACCATGAGCC AGATCAAGGA AAGAGACAGG AAAGCAGATG 001200 001201 ATTTTACCTG CCTTCCCTAA GTGCACTCGG GAAGAGAAGG ATCATCTCAA AAAGGGTTAA GGAATGAGAT CATGGAAATC 001280 001281 ACTTACACAC GCGGTCGCGG CTTGGACTTG GCTAGTGAGG CCGGCCTGCC CACTCTGCTT CCATTCACTC AGACACAGCT 001360 001361 TGGGCTTTTC CTCCAAGTGC TGGTAGCAGT CATTTATGAG GGAGGAAAGG AGCAGAATAA ACACACTTCT CAGC |
Predicted Small Protein
| Name | ENST00000456327.1_smProtein_611:811 |
| Length | 67 |
| Molecular weight | 7599.7699 |
| Aromaticity | 0.0909090909091 |
| Instability index | 46.8984848485 |
| Isoelectric point | 6.81109619141 |
| Runs | 8 |
| Runs residual | 0.0293957539467 |
| Runs probability | 0.0469881646353 |
| Amino acid sequence | MDTQHCFEISVDIQFLKALRALGDTPLSLWHVREPIQPFSSPPPSLSWAIRMRQQLTVHV FTALLQ |
| Secondary structure | LLLLLEEEEEEHHHHHHHHHHHLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHHL |
| PRMN | - |
| PiMo | - |
