Difference between revisions of "ENST00000455232.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ACCAGACGGAAGCGATGCGGGAGGGCATGCCCAGGATGAAAACCTGGGCCACAGAGCAGATGAGCTGGCCCACCACGGTGACCGGAAAGAGATGCGGCTTCAGGCTGCCCAGCTTCACCCAGGCCCCCAGGCAGTTGAGAGCCGAGCCAGTGAGAGCAATGGTGCGCAGGCCGAACTTCTCCAGCAGCCAAGCCACTGGCAGGAGCAGAGGGATGTAAGTCAGCATGTAGCACATGGACAGCCAGTCAATGGCAAAGGCACTGACACCGTAGAAGTGCATGAAGATGTTATTGATGGAGCCGTACTGGATCCACTGAAAGGAGTTGCACATGGAGTAGCAGCTAAACACCAGGACCACGGCCCAACGGCGCCTGCTCACCTTGATCACGCTGAGGTCCTCAGGGCCCGAGCTACTGGGGTGAGCCAAGCCACTGGGTTGGGCTAAGGCACTGGGGTGGGCCGAACTGCTGGGGTGGACAGAGACGCTGGGGTTGATGGAGACGCTGGGATGGACCGAGACGCTGGGATGGACCGAGACGCTGGGGTCCGCTTGGAGTGCGGACTCCGGCACAGGGGTGTCATCGCTCTCTTCCTGGTTGGGACCTTCATTCACCATCGCCACAGTCTCCTCTGGAATCCTGGAGAAGTGGTGAGGACTCCGGCAGTCTTAAGGGACAGTGGCCTCTGCTGGTCTCTTAGAGTTGAAAGGACACTTGCCTATTCCAGAAGAAACAGAGACTAGAGGCTGCGTAAAAGCCTCAAGTGGGGCTTCCTGTGCTCACCTCCAAGCTCCTGCTCCCACTTTTGCTTGGGGCTCTCTGTTGCCACCCGCGGCGATCGCTGTCCCAAGGCCGGCCGCACACGCCGCAGCCGGCTCCGGACCGCTCCTGCCTTGGGTCTCCCCACGAGGCGTTCCTTGTGCAGGAAAAGTTCTCTCCTTGCGCAGCCACTTCGCCCGCAGAGTCCTCTCCCGGGCCAGCTTGGGGCCTCGCCCAGTCGGGCACACGTGACCGCCCCGCCCCCGTCCTGCCTGGCTTCTTCCGCCCCCAACCCCCCCGCCACCACTCCACCCCCGACCCAGTGTCTCTTGCCTTCTCGAGCCCGGTCCTCCGGGCAGAGCAGTTGTTTCGCCACAGCTTGCGGGATGCATTCCTCCCCCACGCCCCGGGCGCCATGGAAACCGCCCGGTTAACCCCCACCCTTTGCACTGCCCCTCATATTCATTTGCCACCCGCTATCAGCGGACCCTGCAAGAAGATCCGCCTTCCCGAAGTAATGCCCAAAATAGAGCCTCTCCGGTGCCTGTCCGCATGCCCTGCGCGCGTGCACCAAAGCCCGGCGCCACCTAAGTGTTCTGGGGAATTCAAGAGGGATTCCCCAACTTTCTCCCCCTTGGCTTAGGCTCCCAGCCCTTTGCTGAACTAAAGAGAGATTTGTAGATTTCCCGGGCTGGTTGCGCTCCTGGGTTAAAGGGGAGTTACAGAAAACTCGCTTTACTCGCTTCTTTCCCTGCGGACGTGGTTTTGTCTTGGGGAGGTTAGATTTGAACCTGTTATGTGGGGCTATTTTTCCTGATGGATTCTGGGCGAAGACCCTAGGGTGCGGGGGAGGGAAAGGAGAGTTTGAAGAAGCCGAAGAAGCTGTCCGCGGTTGTGTGATGGAACGCTTAGCACAGAGCTGGCTCCGGGCTTGGTCTTGGAAGCGGTCTTTGAACTCAAGCAGCCCTAGTCTGCCACCTGCCGGTCCTAGCCCATTTCAAAGGGCAAACCCTCGACTCGTTGCACTGACCTCTGTCCTTGGCGAGGGATCCTGATAAGGAAACTGAGGCCTGGAGAGGCGGGTGTGTTACTCAGCGTCCTATAGTGAAATAGCATCAGAACAAGCAGCAATAAAATGGGTGCTCCTTCCACGTGGCCTTTCCCATGAGCTCTTCTGGGGCAGCCCTTCAGCTTGATTTCTAGCTGTCTCAGGACTTGTGGATATTTTTGTATATTTTGGAGTGTTTAGTGAGATAAACTATGTAACACACGCTCTCAATACGTATCTGTAGAATTGAGTTGTACTGCATATCACCATGAAATTTTACAAAACTGGAGACAAAGAGGAGATCCAACAGGATTTCAGAGATTTTAAAAAATCAGAAAAAGTTAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>ACCAGACGGAAGCGATGCGGGAGGGCATGCCCAGGATGAAAACCTGGGCCACAGAGCAGATGAGCTGGCCCACCACGGTGACCGGAAAGAGATGCGGCTTCAGGCTGCCCAGCTTCACCCAGGCCCCCAGGCAGTTGAGAGCCGAGCCAGTGAGAGCAATGGTGCGCAGGCCGAACTTCTCCAGCAGCCAAGCCACTGGCAGGAGCAGAGGGATGTAAGTCAGCATGTAGCACATGGACAGCCAGTCAATGGCAAAGGCACTGACACCGTAGAAGTGCATGAAGATGTTATTGATGGAGCCGTACTGGATCCACTGAAAGGAGTTGCACATGGAGTAGCAGCTAAACACCAGGACCACGGCCCAACGGCGCCTGCTCACCTTGATCACGCTGAGGTCCTCAGGGCCCGAGCTACTGGGGTGAGCCAAGCCACTGGGTTGGGCTAAGGCACTGGGGTGGGCCGAACTGCTGGGGTGGACAGAGACGCTGGGGTTGATGGAGACGCTGGGATGGACCGAGACGCTGGGATGGACCGAGACGCTGGGGTCCGCTTGGAGTGCGGACTCCGGCACAGGGGTGTCATCGCTCTCTTCCTGGTTGGGACCTTCATTCACCATCGCCACAGTCTCCTCTGGAATCCTGGAGAAGTGGTGAGGACTCCGGCAGTCTTAAGGGACAGTGGCCTCTGCTGGTCTCTTAGAGTTGAAAGGACACTTGCCTATTCCAGAAGAAACAGAGACTAGAGGCTGCGTAAAAGCCTCAAGTGGGGCTTCCTGTGCTCACCTCCAAGCTCCTGCTCCCACTTTTGCTTGGGGCTCTCTGTTGCCACCCGCGGCGATCGCTGTCCCAAGGCCGGCCGCACACGCCGCAGCCGGCTCCGGACCGCTCCTGCCTTGGGTCTCCCCACGAGGCGTTCCTTGTGCAGGAAAAGTTCTCTCCTTGCGCAGCCACTTCGCCCGCAGAGTCCTCTCCCGGGCCAGCTTGGGGCCTCGCCCAGTCGGGCACACGTGACCGCCCCGCCCCCGTCCTGCCTGGCTTCTTCCGCCCCCAACCCCCCCGCCACCACTCCACCCCCGACCCAGTGTCTCTTGCCTTCTCGAGCCCGGTCCTCCGGGCAGAGCAGTTGTTTCGCCACAGCTTGCGGGATGCATTCCTCCCCCACGCCCCGGGCGCCATGGAAACCGCCCGGTTAACCCCCACCCTTTGCACTGCCCCTCATATTCATTTGCCACCCGCTATCAGCGGACCCTGCAAGAAGATCCGCCTTCCCGAAGTAATGCCCAAAATAGAGCCTCTCCGGTGCCTGTCCGCATGCCCTGCGCGCGTGCACCAAAGCCCGGCGCCACCTAAGTGTTCTGGGGAATTCAAGAGGGATTCCCCAACTTTCTCCCCCTTGGCTTAGGCTCCCAGCCCTTTGCTGAACTAAAGAGAGATTTGTAGATTTCCCGGGCTGGTTGCGCTCCTGGGTTAAAGGGGAGTTACAGAAAACTCGCTTTACTCGCTTCTTTCCCTGCGGACGTGGTTTTGTCTTGGGGAGGTTAGATTTGAACCTGTTATGTGGGGCTATTTTTCCTGATGGATTCTGGGCGAAGACCCTAGGGTGCGGGGGAGGGAAAGGAGAGTTTGAAGAAGCCGAAGAAGCTGTCCGCGGTTGTGTGATGGAACGCTTAGCACAGAGCTGGCTCCGGGCTTGGTCTTGGAAGCGGTCTTTGAACTCAAGCAGCCCTAGTCTGCCACCTGCCGGTCCTAGCCCATTTCAAAGGGCAAACCCTCGACTCGTTGCACTGACCTCTGTCCTTGGCGAGGGATCCTGATAAGGAAACTGAGGCCTGGAGAGGCGGGTGTGTTACTCAGCGTCCTATAGTGAAATAGCATCAGAACAAGCAGCAATAAAATGGGTGCTCCTTCCACGTGGCCTTTCCCATGAGCTCTTCTGGGGCAGCCCTTCAGCTTGATTTCTAGCTGTCTCAGGACTTGTGGATATTTTTGTATATTTTGGAGTGTTTAGTGAGATAAACTATGTAACACACGCTCTCAATACGTATCTGTAGAATTGAGTTGTACTGCATATCACCATGAAATTTTACAAAACTGGAGACAAAGAGGAGATCCAACAGGATTTCAGAGATTTTAAAAAATCAGAAAAAGTTAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:lnc-C14orf1-1]] |
Revision as of 06:08, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000455232.1 |
Source |
Gencode19 |
Same with |
lnc-C14orf1-1:1,NONHSAT037862 |
Classification |
antisense |
Length |
2159 nt |
Genomic location |
chr14-:76041231..76045931 |
Exon number |
3 |
Exons |
76041231..76041436,76042748..76042888,76044120..76045931 |
Genome context |
|
Sequence |
000001 ACCAGACGGA AGCGATGCGG GAGGGCATGC CCAGGATGAA AACCTGGGCC ACAGAGCAGA TGAGCTGGCC CACCACGGTG 000080
000081 ACCGGAAAGA GATGCGGCTT CAGGCTGCCC AGCTTCACCC AGGCCCCCAG GCAGTTGAGA GCCGAGCCAG TGAGAGCAAT 000160 000161 GGTGCGCAGG CCGAACTTCT CCAGCAGCCA AGCCACTGGC AGGAGCAGAG GGATGTAAGT CAGCATGTAG CACATGGACA 000240 000241 GCCAGTCAAT GGCAAAGGCA CTGACACCGT AGAAGTGCAT GAAGATGTTA TTGATGGAGC CGTACTGGAT CCACTGAAAG 000320 000321 GAGTTGCACA TGGAGTAGCA GCTAAACACC AGGACCACGG CCCAACGGCG CCTGCTCACC TTGATCACGC TGAGGTCCTC 000400 000401 AGGGCCCGAG CTACTGGGGT GAGCCAAGCC ACTGGGTTGG GCTAAGGCAC TGGGGTGGGC CGAACTGCTG GGGTGGACAG 000480 000481 AGACGCTGGG GTTGATGGAG ACGCTGGGAT GGACCGAGAC GCTGGGATGG ACCGAGACGC TGGGGTCCGC TTGGAGTGCG 000560 000561 GACTCCGGCA CAGGGGTGTC ATCGCTCTCT TCCTGGTTGG GACCTTCATT CACCATCGCC ACAGTCTCCT CTGGAATCCT 000640 000641 GGAGAAGTGG TGAGGACTCC GGCAGTCTTA AGGGACAGTG GCCTCTGCTG GTCTCTTAGA GTTGAAAGGA CACTTGCCTA 000720 000721 TTCCAGAAGA AACAGAGACT AGAGGCTGCG TAAAAGCCTC AAGTGGGGCT TCCTGTGCTC ACCTCCAAGC TCCTGCTCCC 000800 000801 ACTTTTGCTT GGGGCTCTCT GTTGCCACCC GCGGCGATCG CTGTCCCAAG GCCGGCCGCA CACGCCGCAG CCGGCTCCGG 000880 000881 ACCGCTCCTG CCTTGGGTCT CCCCACGAGG CGTTCCTTGT GCAGGAAAAG TTCTCTCCTT GCGCAGCCAC TTCGCCCGCA 000960 000961 GAGTCCTCTC CCGGGCCAGC TTGGGGCCTC GCCCAGTCGG GCACACGTGA CCGCCCCGCC CCCGTCCTGC CTGGCTTCTT 001040 001041 CCGCCCCCAA CCCCCCCGCC ACCACTCCAC CCCCGACCCA GTGTCTCTTG CCTTCTCGAG CCCGGTCCTC CGGGCAGAGC 001120 001121 AGTTGTTTCG CCACAGCTTG CGGGATGCAT TCCTCCCCCA CGCCCCGGGC GCCATGGAAA CCGCCCGGTT AACCCCCACC 001200 001201 CTTTGCACTG CCCCTCATAT TCATTTGCCA CCCGCTATCA GCGGACCCTG CAAGAAGATC CGCCTTCCCG AAGTAATGCC 001280 001281 CAAAATAGAG CCTCTCCGGT GCCTGTCCGC ATGCCCTGCG CGCGTGCACC AAAGCCCGGC GCCACCTAAG TGTTCTGGGG 001360 001361 AATTCAAGAG GGATTCCCCA ACTTTCTCCC CCTTGGCTTA GGCTCCCAGC CCTTTGCTGA ACTAAAGAGA GATTTGTAGA 001440 001441 TTTCCCGGGC TGGTTGCGCT CCTGGGTTAA AGGGGAGTTA CAGAAAACTC GCTTTACTCG CTTCTTTCCC TGCGGACGTG 001520 001521 GTTTTGTCTT GGGGAGGTTA GATTTGAACC TGTTATGTGG GGCTATTTTT CCTGATGGAT TCTGGGCGAA GACCCTAGGG 001600 001601 TGCGGGGGAG GGAAAGGAGA GTTTGAAGAA GCCGAAGAAG CTGTCCGCGG TTGTGTGATG GAACGCTTAG CACAGAGCTG 001680 001681 GCTCCGGGCT TGGTCTTGGA AGCGGTCTTT GAACTCAAGC AGCCCTAGTC TGCCACCTGC CGGTCCTAGC CCATTTCAAA 001760 001761 GGGCAAACCC TCGACTCGTT GCACTGACCT CTGTCCTTGG CGAGGGATCC TGATAAGGAA ACTGAGGCCT GGAGAGGCGG 001840 001841 GTGTGTTACT CAGCGTCCTA TAGTGAAATA GCATCAGAAC AAGCAGCAAT AAAATGGGTG CTCCTTCCAC GTGGCCTTTC 001920 001921 CCATGAGCTC TTCTGGGGCA GCCCTTCAGC TTGATTTCTA GCTGTCTCAG GACTTGTGGA TATTTTTGTA TATTTTGGAG 002000 002001 TGTTTAGTGA GATAAACTAT GTAACACACG CTCTCAATAC GTATCTGTAG AATTGAGTTG TACTGCATAT CACCATGAAA 002080 002081 TTTTACAAAA CTGGAGACAA AGAGGAGATC CAACAGGATT TCAGAGATTT TAAAAAATCA GAAAAAGTTA AAAAAAAAA |
Predicted Small Protein
Name | ENST00000455232.1_smProtein_14:217 |
Length | 68 |
Molecular weight | 7687.8606 |
Aromaticity | 0.0746268656716 |
Instability index | 65.6179104478 |
Isoelectric point | 12.0819702148 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0314255431903 |
Amino acid sequence | MREGMPRMKTWATEQMSWPTTVTGKRCGFRLPSFTQAPRQLRAEPVRAMVRRPNFSSSQA TGRSRGM |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEELLLLLEEELLLLLLLLHHHLLLHHHHHEELLLLLLLLL LLLLLLL |
PRMN | - |
PiMo | - |