Difference between revisions of "ENST00000417232.2"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TGAAGCGGAAACACGTTTTTTCAAGTTCCTGTATTTTTATGTGGAGTTGCTCACTGCCCAACGTAGAGGACTAGGAATCAGGAGTCGGTGGCCGTATGCTGGAGGCTGGAGCCGCGGGAGCGCGGCTCGCCTCGCTGCGGTTGTTGGCAGTGACGGAGAGAGAGCAGCGCGGCTGGAGCAGGACATTGTATTAGTTTCCTGCAATAAAATATTTTTACAATGTCAGTTTGTCGAAACTGCTGGACTGTAAACTATTTCTAATCGAAACCTGAAATTGTGTCACAACATGGCTGTATTACGATTCCATGTCAGAGGAAGGATATATACGTGCATCTGGTAGTGGCTTCCAGTTGTTGCTGTCAGATGTTTGTTTGGGAATGCATTCAGAAGAGCTTATCAAGGACTTGAGTACAAAACAAGCATTTCCACAAAAAAGCAGTGACACAAATCACTATGTAATATAGTTAGCCTTTGAACAACACGGATTTGAACTGCAGGGGTCTACTTATGAGCAGATTTTCTCCCACCTCTACCACCTGAGACAGCGAAGACCAATCTTCCTCTTCCTCCTTCTCCTTAGCCTGCTCAACTTGAAGACTATGATGAAGAGTTATATAATGATCTACTTGCATTTAATGAACAATAGTTTCCCTTGCAAAGTTATCAAAGTGCTCCCCAGAAGACATTAGGTATTTGCTTTCTAGTCTAC</dnaseq>| | sequence = <dnaseq>TGAAGCGGAAACACGTTTTTTCAAGTTCCTGTATTTTTATGTGGAGTTGCTCACTGCCCAACGTAGAGGACTAGGAATCAGGAGTCGGTGGCCGTATGCTGGAGGCTGGAGCCGCGGGAGCGCGGCTCGCCTCGCTGCGGTTGTTGGCAGTGACGGAGAGAGAGCAGCGCGGCTGGAGCAGGACATTGTATTAGTTTCCTGCAATAAAATATTTTTACAATGTCAGTTTGTCGAAACTGCTGGACTGTAAACTATTTCTAATCGAAACCTGAAATTGTGTCACAACATGGCTGTATTACGATTCCATGTCAGAGGAAGGATATATACGTGCATCTGGTAGTGGCTTCCAGTTGTTGCTGTCAGATGTTTGTTTGGGAATGCATTCAGAAGAGCTTATCAAGGACTTGAGTACAAAACAAGCATTTCCACAAAAAAGCAGTGACACAAATCACTATGTAATATAGTTAGCCTTTGAACAACACGGATTTGAACTGCAGGGGTCTACTTATGAGCAGATTTTCTCCCACCTCTACCACCTGAGACAGCGAAGACCAATCTTCCTCTTCCTCCTTCTCCTTAGCCTGCTCAACTTGAAGACTATGATGAAGAGTTATATAATGATCTACTTGCATTTAATGAACAATAGTTTCCCTTGCAAAGTTATCAAAGTGCTCCCCAGAAGACATTAGGTATTTGCTTTCTAGTCTAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:lnc-DHRS7B-5]] |
Revision as of 10:16, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000417232.2 |
| Source |
Gencode19 |
| Same with |
lnc-DHRS7B-5:3,NONHSAT146845 |
| Classification |
antisense |
| Length |
709 nt |
| Genomic location |
chr17+:20771818..20827738 |
| Exon number |
4 |
| Exons |
20771818..20771998,20790905..20791162,20795543..20795745,20827672..20827738 |
| Genome context |
|
| Sequence |
000001 TGAAGCGGAA ACACGTTTTT TCAAGTTCCT GTATTTTTAT GTGGAGTTGC TCACTGCCCA ACGTAGAGGA CTAGGAATCA 000080
000081 GGAGTCGGTG GCCGTATGCT GGAGGCTGGA GCCGCGGGAG CGCGGCTCGC CTCGCTGCGG TTGTTGGCAG TGACGGAGAG 000160 000161 AGAGCAGCGC GGCTGGAGCA GGACATTGTA TTAGTTTCCT GCAATAAAAT ATTTTTACAA TGTCAGTTTG TCGAAACTGC 000240 000241 TGGACTGTAA ACTATTTCTA ATCGAAACCT GAAATTGTGT CACAACATGG CTGTATTACG ATTCCATGTC AGAGGAAGGA 000320 000321 TATATACGTG CATCTGGTAG TGGCTTCCAG TTGTTGCTGT CAGATGTTTG TTTGGGAATG CATTCAGAAG AGCTTATCAA 000400 000401 GGACTTGAGT ACAAAACAAG CATTTCCACA AAAAAGCAGT GACACAAATC ACTATGTAAT ATAGTTAGCC TTTGAACAAC 000480 000481 ACGGATTTGA ACTGCAGGGG TCTACTTATG AGCAGATTTT CTCCCACCTC TACCACCTGA GACAGCGAAG ACCAATCTTC 000560 000561 CTCTTCCTCC TTCTCCTTAG CCTGCTCAAC TTGAAGACTA TGATGAAGAG TTATATAATG ATCTACTTGC ATTTAATGAA 000640 000641 CAATAGTTTC CCTTGCAAAG TTATCAAAGT GCTCCCCAGA AGACATTAGG TATTTGCTTT CTAGTCTAC |
Predicted Small Protein
| Name | ENST00000417232.2_smProtein_305:463 |
| Length | 53 |
| Molecular weight | 5762.4166 |
| Aromaticity | 0.0769230769231 |
| Instability index | 67.9846153846 |
| Isoelectric point | 5.00628662109 |
| Runs | 10 |
| Runs residual | 0.041938287701 |
| Runs probability | 0.0488429606077 |
| Amino acid sequence | MSEEGYIRASGSGFQLLLSDVCLGMHSEELIKDLSTKQAFPQKSSDTNHYVI |
| Secondary structure | LLLLEEEEELLLLEEEEEHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLEEL |
| PRMN | - |
| PiMo | - |
