Difference between revisions of "Lnc-PIK3C3-2:3"

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sequence = <dnaseq>CAGAGATGCCACAAAGTTTAACTTTGGCCTCAGTACTCAGGAAAAGATATACTTGGTTTCAGCCTTGGCTTCAGGCTTTGAAAGACAGAGTAACAAATAGCTACTTCTTTTCTGGCCCCTTCATCATCTGCTTGTTCAATGGAGCTTAGGCCAGAGTCTTTCAAGAAAAAAAGTCTTATTAGAGAAGTCTTCATATCTCGTGAGGATGAATTAAAAGCAGAATCTCAACTTTGCTACCTTTAAATGTCACGGAGAGAAAAAACTGCAAAACCATGTGCAACAATATCCATGATAAATCATCTTTGATCTCAACATAACGGAGACTATAAGGAGTATAAAGACTAGAAGAAAGAGTAGAAGGTGATCCACAATCAATTCAGAACCTGGTCTTCTATGGTGGCTCACAGTTCCTGCACCCTACAATATCGTGAATTTTCTTCCTCTTCATCTAATGACATGAATATGCTCCAGTGGATCCTAGGATATCTTTCACATGAGGTTACCCTTGCCCTTTGGATGTCAGGTGGAACAAAGGGATGGAAGATTTTTTGTACTGGGACATTCAGTAAACCCCTAGGCCTACCTATTGTCTAGTCAGAGTTAGAGAAGCAAATGATGTCTGTGAGGGCCTACAAGGCACAAGAGGATGAAAGTTTAACTTAAAGTTTAGATGCTGATATTCTAGCTAGTAATAATGTATGATTGCCTCATGTACTACTCTTTTTTTATATTTCTCTCCTAATGTATAAAGATGGATTTCAAAAGATAGGCAGCCTGGGATTCAAATTCTGATCATCTTTTCACTTTGTAAACTAATGGATATATTTTTTTAAAACATTGTGTTTAATACACGCCAATGCCAAAGGCTTTCTACAGACTCATGTGGAGTGGGATGATGCCCAGAATGTCGATAAATTGACAGAATAATATGAAGAACCCAACAGTCATGTGCCATGAATTCTGCAGGCACATTTGGACATGAGTGTGAGCCAGAAGATCATTCTATTTGGGAAAATTTAAATTGGGTGCAAGAAGCATTAGCTAACAGTCTGAACCGAGGTATGATCCAAACTGATAAAACTTGATGAAGTTGGAAGAAGCAAAAGGGAGTTGGTATGGATCCTCAGAATACGACAGAAACACAAGGAGTTTCAAGGGCATTTGACAACATGAAGTGCCAGCTATATTAGGGCACAGCAGAAAAAAAATGTTTTCTGGACAGACTTAATTTCTGAAGTGCCTTCTCCTCTTATACTACCATGGAAATTACAGTGTTCTTCTGCTGTCTCAGCACCTTCCACATTTAAAAAAAAATCATGCCTTTCCTTATCTGTCTACCTAATTAGACATCCATGGATGAGAAATGTGTCTATGTATCTTCAGTTTCTATATGTCCACTACAATCCTCATGCCTGGAACAGAGAGGTGTTCAATAAATCCATGAACAAAAAGAAACTGAAGTTCTAAGGTCCAAACAATGTTGATTCTTTATGAGCCAGTAGGGATTTGCCTCTTTCTAATTCCTCCTGGAGCACAAGTGTTCCCGGAATCTGGAGCAGGGTTAAAAGCAGAGATGAATAATGATCCCCATTGTAAAGTCCCAGGGATCCAGATAAGATAATATGCCCCACTCCAGGGAGAATATATATACTTTTTTATTAAGAAGACACAAGAAATGGAATGCAGCCTATGTTTGTAAGCGGACTTTAATATTAAGCCCTCAATAAATATTTGATAAATGAATGAATGATTCTGTCCAAAGAGGTTAATCATTAAAATGCTCAGAGGAGACCTCAGCAGGCCCTTGAAGAACACAGCAATTTAAGAAGTAAAAAGGAGGATGTAGGGGAATGTTAGTCAGGGTCAAGCCAAACATTGAATTCAGCATGGCAAATGAAATTTACTGTAAGTGGTCTCTGTGCTGAGATACATATTACTGTTTGTGCAAATTTAGTTCCGTTAACTTTTCCCAAAACTTCTTCACCACCTTATCTTGGAGCTTAATTCTAACTCTCTCTACTATGTCCATACTATGGGAATGTCTTCAAGATAATATTGTCTTGTTAAAATTCGGCTTCAGACTTCAGGACTTTTACATTCTTGGATGGGGATCTAAACAAGACATGAACCAATCATAAGGAAATATGGCTCCTTCTCCATTATTTTAAACAAGAAAATATTATTGTTATTGTAGCTGTTTGAGAGACAAGGAGATTAAACTTGCTACGGTTAAGAAATTTGAAAGCAGATTTTTTTAGAGGCAGACAATAAGGAAGAGTGTTTTTGGACATACTTTGCTCAAACCTTTCCTGTGTTTGAGTATTCCACCCAAACAGAACTTTCTCCATTGAGCCATTTGCTGTCCTGTCAGCTAAAAAATAAAAAATAAAAAAAACAATAAAACAAAACAAAACAAAGAGCAAAAACCATTTTATCTTCTTGATACTGTGGCACTTGATGTGCAACAGAGAGACTACATTCTTGCAATCGGTCAGAAGCAGAACTTGACCAATATGAAACAATACATATCCTAAGAAAACAACATGCACAGATAATTTGCAGAAAGTTTAGAACAACAACAATAAAATATTTTAATTTGCTCTGTATTGCAAAGCTTGTTGCTTTTCATAATGCCTTGATATAACACGTGGGATGAAGAATCTATTTTTTAAAAGA</dnaseq>|
 
sequence = <dnaseq>CAGAGATGCCACAAAGTTTAACTTTGGCCTCAGTACTCAGGAAAAGATATACTTGGTTTCAGCCTTGGCTTCAGGCTTTGAAAGACAGAGTAACAAATAGCTACTTCTTTTCTGGCCCCTTCATCATCTGCTTGTTCAATGGAGCTTAGGCCAGAGTCTTTCAAGAAAAAAAGTCTTATTAGAGAAGTCTTCATATCTCGTGAGGATGAATTAAAAGCAGAATCTCAACTTTGCTACCTTTAAATGTCACGGAGAGAAAAAACTGCAAAACCATGTGCAACAATATCCATGATAAATCATCTTTGATCTCAACATAACGGAGACTATAAGGAGTATAAAGACTAGAAGAAAGAGTAGAAGGTGATCCACAATCAATTCAGAACCTGGTCTTCTATGGTGGCTCACAGTTCCTGCACCCTACAATATCGTGAATTTTCTTCCTCTTCATCTAATGACATGAATATGCTCCAGTGGATCCTAGGATATCTTTCACATGAGGTTACCCTTGCCCTTTGGATGTCAGGTGGAACAAAGGGATGGAAGATTTTTTGTACTGGGACATTCAGTAAACCCCTAGGCCTACCTATTGTCTAGTCAGAGTTAGAGAAGCAAATGATGTCTGTGAGGGCCTACAAGGCACAAGAGGATGAAAGTTTAACTTAAAGTTTAGATGCTGATATTCTAGCTAGTAATAATGTATGATTGCCTCATGTACTACTCTTTTTTTATATTTCTCTCCTAATGTATAAAGATGGATTTCAAAAGATAGGCAGCCTGGGATTCAAATTCTGATCATCTTTTCACTTTGTAAACTAATGGATATATTTTTTTAAAACATTGTGTTTAATACACGCCAATGCCAAAGGCTTTCTACAGACTCATGTGGAGTGGGATGATGCCCAGAATGTCGATAAATTGACAGAATAATATGAAGAACCCAACAGTCATGTGCCATGAATTCTGCAGGCACATTTGGACATGAGTGTGAGCCAGAAGATCATTCTATTTGGGAAAATTTAAATTGGGTGCAAGAAGCATTAGCTAACAGTCTGAACCGAGGTATGATCCAAACTGATAAAACTTGATGAAGTTGGAAGAAGCAAAAGGGAGTTGGTATGGATCCTCAGAATACGACAGAAACACAAGGAGTTTCAAGGGCATTTGACAACATGAAGTGCCAGCTATATTAGGGCACAGCAGAAAAAAAATGTTTTCTGGACAGACTTAATTTCTGAAGTGCCTTCTCCTCTTATACTACCATGGAAATTACAGTGTTCTTCTGCTGTCTCAGCACCTTCCACATTTAAAAAAAAATCATGCCTTTCCTTATCTGTCTACCTAATTAGACATCCATGGATGAGAAATGTGTCTATGTATCTTCAGTTTCTATATGTCCACTACAATCCTCATGCCTGGAACAGAGAGGTGTTCAATAAATCCATGAACAAAAAGAAACTGAAGTTCTAAGGTCCAAACAATGTTGATTCTTTATGAGCCAGTAGGGATTTGCCTCTTTCTAATTCCTCCTGGAGCACAAGTGTTCCCGGAATCTGGAGCAGGGTTAAAAGCAGAGATGAATAATGATCCCCATTGTAAAGTCCCAGGGATCCAGATAAGATAATATGCCCCACTCCAGGGAGAATATATATACTTTTTTATTAAGAAGACACAAGAAATGGAATGCAGCCTATGTTTGTAAGCGGACTTTAATATTAAGCCCTCAATAAATATTTGATAAATGAATGAATGATTCTGTCCAAAGAGGTTAATCATTAAAATGCTCAGAGGAGACCTCAGCAGGCCCTTGAAGAACACAGCAATTTAAGAAGTAAAAAGGAGGATGTAGGGGAATGTTAGTCAGGGTCAAGCCAAACATTGAATTCAGCATGGCAAATGAAATTTACTGTAAGTGGTCTCTGTGCTGAGATACATATTACTGTTTGTGCAAATTTAGTTCCGTTAACTTTTCCCAAAACTTCTTCACCACCTTATCTTGGAGCTTAATTCTAACTCTCTCTACTATGTCCATACTATGGGAATGTCTTCAAGATAATATTGTCTTGTTAAAATTCGGCTTCAGACTTCAGGACTTTTACATTCTTGGATGGGGATCTAAACAAGACATGAACCAATCATAAGGAAATATGGCTCCTTCTCCATTATTTTAAACAAGAAAATATTATTGTTATTGTAGCTGTTTGAGAGACAAGGAGATTAAACTTGCTACGGTTAAGAAATTTGAAAGCAGATTTTTTTAGAGGCAGACAATAAGGAAGAGTGTTTTTGGACATACTTTGCTCAAACCTTTCCTGTGTTTGAGTATTCCACCCAAACAGAACTTTCTCCATTGAGCCATTTGCTGTCCTGTCAGCTAAAAAATAAAAAATAAAAAAAACAATAAAACAAAACAAAACAAAGAGCAAAAACCATTTTATCTTCTTGATACTGTGGCACTTGATGTGCAACAGAGAGACTACATTCTTGCAATCGGTCAGAAGCAGAACTTGACCAATATGAAACAATACATATCCTAAGAAAACAACATGCACAGATAATTTGCAGAAAGTTTAGAACAACAACAATAAAATATTTTAATTTGCTCTGTATTGCAAAGCTTGTTGCTTTTCATAATGCCTTGATATAACACGTGGGATGAAGAATCTATTTTTTAAAAGA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:lnc-PIK3C3-2]]

Revision as of 11:32, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-PIK3C3-2:3

Source

LNCipedia2.1

Same with

NONHSAT059028

Classification

intergenic

Length

2676 nt

Genomic location

chr18+:37235808..37245528

Exon number

4

Exons

37235808..37235951,37236410..37236625,37237386..37237455,37243283..37245528

Genome context

Sequence
000001 CAGAGATGCC ACAAAGTTTA ACTTTGGCCT CAGTACTCAG GAAAAGATAT ACTTGGTTTC AGCCTTGGCT TCAGGCTTTG 000080
000081 AAAGACAGAG TAACAAATAG CTACTTCTTT TCTGGCCCCT TCATCATCTG CTTGTTCAAT GGAGCTTAGG CCAGAGTCTT 000160
000161 TCAAGAAAAA AAGTCTTATT AGAGAAGTCT TCATATCTCG TGAGGATGAA TTAAAAGCAG AATCTCAACT TTGCTACCTT 000240
000241 TAAATGTCAC GGAGAGAAAA AACTGCAAAA CCATGTGCAA CAATATCCAT GATAAATCAT CTTTGATCTC AACATAACGG 000320
000321 AGACTATAAG GAGTATAAAG ACTAGAAGAA AGAGTAGAAG GTGATCCACA ATCAATTCAG AACCTGGTCT TCTATGGTGG 000400
000401 CTCACAGTTC CTGCACCCTA CAATATCGTG AATTTTCTTC CTCTTCATCT AATGACATGA ATATGCTCCA GTGGATCCTA 000480
000481 GGATATCTTT CACATGAGGT TACCCTTGCC CTTTGGATGT CAGGTGGAAC AAAGGGATGG AAGATTTTTT GTACTGGGAC 000560
000561 ATTCAGTAAA CCCCTAGGCC TACCTATTGT CTAGTCAGAG TTAGAGAAGC AAATGATGTC TGTGAGGGCC TACAAGGCAC 000640
000641 AAGAGGATGA AAGTTTAACT TAAAGTTTAG ATGCTGATAT TCTAGCTAGT AATAATGTAT GATTGCCTCA TGTACTACTC 000720
000721 TTTTTTTATA TTTCTCTCCT AATGTATAAA GATGGATTTC AAAAGATAGG CAGCCTGGGA TTCAAATTCT GATCATCTTT 000800
000801 TCACTTTGTA AACTAATGGA TATATTTTTT TAAAACATTG TGTTTAATAC ACGCCAATGC CAAAGGCTTT CTACAGACTC 000880
000881 ATGTGGAGTG GGATGATGCC CAGAATGTCG ATAAATTGAC AGAATAATAT GAAGAACCCA ACAGTCATGT GCCATGAATT 000960
000961 CTGCAGGCAC ATTTGGACAT GAGTGTGAGC CAGAAGATCA TTCTATTTGG GAAAATTTAA ATTGGGTGCA AGAAGCATTA 001040
001041 GCTAACAGTC TGAACCGAGG TATGATCCAA ACTGATAAAA CTTGATGAAG TTGGAAGAAG CAAAAGGGAG TTGGTATGGA 001120
001121 TCCTCAGAAT ACGACAGAAA CACAAGGAGT TTCAAGGGCA TTTGACAACA TGAAGTGCCA GCTATATTAG GGCACAGCAG 001200
001201 AAAAAAAATG TTTTCTGGAC AGACTTAATT TCTGAAGTGC CTTCTCCTCT TATACTACCA TGGAAATTAC AGTGTTCTTC 001280
001281 TGCTGTCTCA GCACCTTCCA CATTTAAAAA AAAATCATGC CTTTCCTTAT CTGTCTACCT AATTAGACAT CCATGGATGA 001360
001361 GAAATGTGTC TATGTATCTT CAGTTTCTAT ATGTCCACTA CAATCCTCAT GCCTGGAACA GAGAGGTGTT CAATAAATCC 001440
001441 ATGAACAAAA AGAAACTGAA GTTCTAAGGT CCAAACAATG TTGATTCTTT ATGAGCCAGT AGGGATTTGC CTCTTTCTAA 001520
001521 TTCCTCCTGG AGCACAAGTG TTCCCGGAAT CTGGAGCAGG GTTAAAAGCA GAGATGAATA ATGATCCCCA TTGTAAAGTC 001600
001601 CCAGGGATCC AGATAAGATA ATATGCCCCA CTCCAGGGAG AATATATATA CTTTTTTATT AAGAAGACAC AAGAAATGGA 001680
001681 ATGCAGCCTA TGTTTGTAAG CGGACTTTAA TATTAAGCCC TCAATAAATA TTTGATAAAT GAATGAATGA TTCTGTCCAA 001760
001761 AGAGGTTAAT CATTAAAATG CTCAGAGGAG ACCTCAGCAG GCCCTTGAAG AACACAGCAA TTTAAGAAGT AAAAAGGAGG 001840
001841 ATGTAGGGGA ATGTTAGTCA GGGTCAAGCC AAACATTGAA TTCAGCATGG CAAATGAAAT TTACTGTAAG TGGTCTCTGT 001920
001921 GCTGAGATAC ATATTACTGT TTGTGCAAAT TTAGTTCCGT TAACTTTTCC CAAAACTTCT TCACCACCTT ATCTTGGAGC 002000
002001 TTAATTCTAA CTCTCTCTAC TATGTCCATA CTATGGGAAT GTCTTCAAGA TAATATTGTC TTGTTAAAAT TCGGCTTCAG 002080
002081 ACTTCAGGAC TTTTACATTC TTGGATGGGG ATCTAAACAA GACATGAACC AATCATAAGG AAATATGGCT CCTTCTCCAT 002160
002161 TATTTTAAAC AAGAAAATAT TATTGTTATT GTAGCTGTTT GAGAGACAAG GAGATTAAAC TTGCTACGGT TAAGAAATTT 002240
002241 GAAAGCAGAT TTTTTTAGAG GCAGACAATA AGGAAGAGTG TTTTTGGACA TACTTTGCTC AAACCTTTCC TGTGTTTGAG 002320
002321 TATTCCACCC AAACAGAACT TTCTCCATTG AGCCATTTGC TGTCCTGTCA GCTAAAAAAT AAAAAATAAA AAAAACAATA 002400
002401 AAACAAAACA AAACAAAGAG CAAAAACCAT TTTATCTTCT TGATACTGTG GCACTTGATG TGCAACAGAG AGACTACATT 002480
002481 CTTGCAATCG GTCAGAAGCA GAACTTGACC AATATGAAAC AATACATATC CTAAGAAAAC AACATGCACA GATAATTTGC 002560
002561 AGAAAGTTTA GAACAACAAC AATAAAATAT TTTAATTTGC TCTGTATTGC AAAGCTTGTT GCTTTTCATA ATGCCTTGAT 002640
002641 ATAACACGTG GGATGAAGAA TCTATTTTTT AAAAGA
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