Difference between revisions of "Lnc-SOX11-3:9"

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sequence = <dnaseq>ATCCAGAGACCACACTAAAATGGTGGCTGACGTGGAGACAGAGGAAGCTCCTTTCTAGTTATGGCCACAAGGCAGGATGCTGAGGTGTTGTCTAGGCTCAGTTGGATCTCCAAGTGGCGGTACCGTTCTCTCCACTTCAAAAATACACAGAAACATGTGGAAATGTTCTGTCATCCAGAATGAAAAGCATGTGCACCAAATTTTCACAGACCTGATTCGAATGTAGATAAAAGTGCAAAATCCAGAGGAGGGAACACGCTATAGAAATCCTGTCTTCTATACTATAATTTAATCATCGTGTGCCACAGAATGTCTTTGCATAAATTACAACCACAATAATAGCATCACTTTCACAAAAGGTGGCCTCTAATCGATTTGACTCTCCAAGAGATGGCTGGGTTTTTCAAAGCAGAGAAATGATGACCTGCAGTCTTAAAGAGCTGTTGATTGCACCTGGGGCTCCCGTGGCCGGCGCCCATCGAGCAGCCCATCCTGGCTGTTCCCTTGTTCAGCTGATTTTCTTTTTTATCTTGACATTTGCTAACCGCTTGGTTTTTATTTTCCGGGAAGAGAGGATTATTGGCAACTGGCACCACCCCCATGTCTGGAGGAGGGACGTTTCTAGGATGACCCCCAGAGTGGAGAAATAGCCGAGCTCATGAGGCAACCCACACAGGCAGGCTGGAGAGGAGTGGCAAGAAGCTCACCTTCGGACAGTAGTGAGCAGAGCAACAGAGGCCCCCAGAGACTTCGCACAACGGAAAAGAGATCAACTCCCGCATTTGCAGGGGACGTGAAAGTGCAATACTGTGAGGAACAAAAGGAAGCCTCATCTCTGGAAGCCGGGAGGAAAAACAGTCGGTGTAGACAGCAGCGGCAGGGACCAGAGCTGACCAGAAGGCTGGGTCCCAGCAACAATTAGAGACAGGCAGCAGCTGAGGCCCCTTCTCTGAGAACCATTTCAATTGCACAGTGGCCACAGAAGGCTCCATTGGCCCGGCAGCCAGCTCTGCAGAGCCATTTGTCCACAAGGAAAATAATAGCCCCGGCCTCATTGCTTTGGGCTGCAGGGAGGACAATGACCCACCATGAAAAGAGTTAAAAAGATTCTGGGGAAGGGGAAAGGCAGGCCCACACGGTGGCAATTCAAGATCTTTTGGATGCCGTGAGCGTGTTCTTTAATTAAGCCCCTCTTCTTCAGCTCATCCTGCAGAAACGCACCTGCTTCCCATCTGCCATCCAAAACGGCAAGCACAAGAATGACTTCACACTGTCACTTTCAGAGTTCCGCTGTGGCCCACAGTGATTTTTCAAGAAAGGCAGCCACAGACTCGCTCGCGCTTTCTCTTTCTCCTTTCCTCTGAAAGACTCTATAAAAACCACATTAAAAAGTGTGTGAGCCAAGCAATTTCATTTATCAAAGGAAGAAGGTCATCCATAGCATTCATTCTAAGAATATCAGGCACACGGCCAGCCCTGGACACAAGGCATGAAGACCAGAGGGCCCTTTATTGACCTAATCTCTATTTTGTCGCCAAACTGCATCTGTGTCTGAAAGCTGGGACACACAATATTTCCCTCTACCAAAATAATTTTATTTTCTGCAGCAGCATGTAACAAACAATTAATGGTGGTAACATGGGCTTCTGTCATTTTCTGAACAACCCAGTTCTGTTTGGTGTTACTGCAGTGGTTGTTATTTTGGGTGGTTCTGTGCTTATTCCATTCTGCCAATTGGTCCCATTCGCATGGGCGTGAGCCCGTGCCGTCATCTACCACCTTGGAATCCATGTTATTGCCAGAACTGTGTGGGGCCTTGCTTGAGGGCCTGTCCCCTGTCCTCTTCACAGATGTTTCTGTGCCTTCAGGGAGAGGACTGATTGTGCTGTCTCCCTCTCCCACCCGTGTCTGCTGTCTCCAAAACTAAGGGAGGCTGCGGTGAAACCAGCCTGGCCCAGGTTCCTCTGGTGCCTGCCGTGGCTCAAATTATCCAAACTACAGTGGCTGATTCCCAGCGACCCATCCCTTAGTGCCCTTGTGCCCCGTTGAAGAAGTGGCCCATGTTATGAATAGGGAAGCTAAGGTCATTAAGAATTTGTGCAGGCGTACAAAGAAAGTGCAAGTCAGAGATCCTTGTCTCAGCTACTTTGCTTGAAAAATGACTCCATGCTCTGAGATGCTATAAATGGAGCAAACAGTGTGAAGTGGTTCTCCCCCTCCAAGAAACTGCCCCCTGATGCGTTCCCCCATTAGACACCTGCTCCTCCAAGCCTGGTCTTCTCTCTGCAACCACTTCCCCTATGCCTCTCCCCACCCACCATGCATGACTCCTTGTCACACACATGATCTCTGGTCCTACCTTGCACTTGGTGCTGGGGGCTGTGATTCCCTCTGCCTCTGTCTCCCCACATCGTCCCTGACATCACCTTTCACCGTGCACTGGTCTCGCTTCCTCGGGAACTCTATGAATGGCCTTGTTCTCTGATTATTTGATTATTCCATTATCAACCCAAAGCTCACTGGGTCTATGGGGCTGAGAGGTCGTTTTTATTACATCATTTTAATTATTCAGATAAAAGACTCGCAGGCACAGATTTATCACCACTGCCTAAAGAAAAGCAGAGACACACATAATTCCATTTTGAAAATCCATTCTTAAAAGCAAAAATATGATTCAGTTGAAGGTATTCAGAAAAAAAAATGCTCATTGAAAAACCCTGATGATTTTTAGCATTTCAAATAAATTGTGTACAGTTACGGTCATTTGTTAACTATTTTGGAGACTGCGAGCTGATCATTATCTCTCTTTTTCAGATAACAAAATGTATCTACCTTCTCCCAGAGTGTAAACTAATCTGGTGGCTGGAAAAAGCAAACAAACAAACAAAGATCTGTTAAGAAAGATCTGATTTTTCAAATGGCGCATACCATTCCTTGAAACAGAGGTGATGAATAGGTAGAGACAAAAGCATCAAACATCCAGGCAGGACCTGTTTATCTCTGGGCAGAAATCTGTTCAATTCCATGATAAAACAAGGTTTGAAGTCAGGGATTCAATTTCACAAACTAAACAGACGTGTGCACACACATGTGCACACTGTGCATGTCCCAGTGCACACACGCAGAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACACACAACCCATTTCATAGGGACACACGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAATGCACAGACACACAACCCATTTTGTAGGGTCCTAGCAGAATTTTCTCTGTAGGAAAAGCACTCAATCT</dnaseq>|
 
sequence = <dnaseq>ATCCAGAGACCACACTAAAATGGTGGCTGACGTGGAGACAGAGGAAGCTCCTTTCTAGTTATGGCCACAAGGCAGGATGCTGAGGTGTTGTCTAGGCTCAGTTGGATCTCCAAGTGGCGGTACCGTTCTCTCCACTTCAAAAATACACAGAAACATGTGGAAATGTTCTGTCATCCAGAATGAAAAGCATGTGCACCAAATTTTCACAGACCTGATTCGAATGTAGATAAAAGTGCAAAATCCAGAGGAGGGAACACGCTATAGAAATCCTGTCTTCTATACTATAATTTAATCATCGTGTGCCACAGAATGTCTTTGCATAAATTACAACCACAATAATAGCATCACTTTCACAAAAGGTGGCCTCTAATCGATTTGACTCTCCAAGAGATGGCTGGGTTTTTCAAAGCAGAGAAATGATGACCTGCAGTCTTAAAGAGCTGTTGATTGCACCTGGGGCTCCCGTGGCCGGCGCCCATCGAGCAGCCCATCCTGGCTGTTCCCTTGTTCAGCTGATTTTCTTTTTTATCTTGACATTTGCTAACCGCTTGGTTTTTATTTTCCGGGAAGAGAGGATTATTGGCAACTGGCACCACCCCCATGTCTGGAGGAGGGACGTTTCTAGGATGACCCCCAGAGTGGAGAAATAGCCGAGCTCATGAGGCAACCCACACAGGCAGGCTGGAGAGGAGTGGCAAGAAGCTCACCTTCGGACAGTAGTGAGCAGAGCAACAGAGGCCCCCAGAGACTTCGCACAACGGAAAAGAGATCAACTCCCGCATTTGCAGGGGACGTGAAAGTGCAATACTGTGAGGAACAAAAGGAAGCCTCATCTCTGGAAGCCGGGAGGAAAAACAGTCGGTGTAGACAGCAGCGGCAGGGACCAGAGCTGACCAGAAGGCTGGGTCCCAGCAACAATTAGAGACAGGCAGCAGCTGAGGCCCCTTCTCTGAGAACCATTTCAATTGCACAGTGGCCACAGAAGGCTCCATTGGCCCGGCAGCCAGCTCTGCAGAGCCATTTGTCCACAAGGAAAATAATAGCCCCGGCCTCATTGCTTTGGGCTGCAGGGAGGACAATGACCCACCATGAAAAGAGTTAAAAAGATTCTGGGGAAGGGGAAAGGCAGGCCCACACGGTGGCAATTCAAGATCTTTTGGATGCCGTGAGCGTGTTCTTTAATTAAGCCCCTCTTCTTCAGCTCATCCTGCAGAAACGCACCTGCTTCCCATCTGCCATCCAAAACGGCAAGCACAAGAATGACTTCACACTGTCACTTTCAGAGTTCCGCTGTGGCCCACAGTGATTTTTCAAGAAAGGCAGCCACAGACTCGCTCGCGCTTTCTCTTTCTCCTTTCCTCTGAAAGACTCTATAAAAACCACATTAAAAAGTGTGTGAGCCAAGCAATTTCATTTATCAAAGGAAGAAGGTCATCCATAGCATTCATTCTAAGAATATCAGGCACACGGCCAGCCCTGGACACAAGGCATGAAGACCAGAGGGCCCTTTATTGACCTAATCTCTATTTTGTCGCCAAACTGCATCTGTGTCTGAAAGCTGGGACACACAATATTTCCCTCTACCAAAATAATTTTATTTTCTGCAGCAGCATGTAACAAACAATTAATGGTGGTAACATGGGCTTCTGTCATTTTCTGAACAACCCAGTTCTGTTTGGTGTTACTGCAGTGGTTGTTATTTTGGGTGGTTCTGTGCTTATTCCATTCTGCCAATTGGTCCCATTCGCATGGGCGTGAGCCCGTGCCGTCATCTACCACCTTGGAATCCATGTTATTGCCAGAACTGTGTGGGGCCTTGCTTGAGGGCCTGTCCCCTGTCCTCTTCACAGATGTTTCTGTGCCTTCAGGGAGAGGACTGATTGTGCTGTCTCCCTCTCCCACCCGTGTCTGCTGTCTCCAAAACTAAGGGAGGCTGCGGTGAAACCAGCCTGGCCCAGGTTCCTCTGGTGCCTGCCGTGGCTCAAATTATCCAAACTACAGTGGCTGATTCCCAGCGACCCATCCCTTAGTGCCCTTGTGCCCCGTTGAAGAAGTGGCCCATGTTATGAATAGGGAAGCTAAGGTCATTAAGAATTTGTGCAGGCGTACAAAGAAAGTGCAAGTCAGAGATCCTTGTCTCAGCTACTTTGCTTGAAAAATGACTCCATGCTCTGAGATGCTATAAATGGAGCAAACAGTGTGAAGTGGTTCTCCCCCTCCAAGAAACTGCCCCCTGATGCGTTCCCCCATTAGACACCTGCTCCTCCAAGCCTGGTCTTCTCTCTGCAACCACTTCCCCTATGCCTCTCCCCACCCACCATGCATGACTCCTTGTCACACACATGATCTCTGGTCCTACCTTGCACTTGGTGCTGGGGGCTGTGATTCCCTCTGCCTCTGTCTCCCCACATCGTCCCTGACATCACCTTTCACCGTGCACTGGTCTCGCTTCCTCGGGAACTCTATGAATGGCCTTGTTCTCTGATTATTTGATTATTCCATTATCAACCCAAAGCTCACTGGGTCTATGGGGCTGAGAGGTCGTTTTTATTACATCATTTTAATTATTCAGATAAAAGACTCGCAGGCACAGATTTATCACCACTGCCTAAAGAAAAGCAGAGACACACATAATTCCATTTTGAAAATCCATTCTTAAAAGCAAAAATATGATTCAGTTGAAGGTATTCAGAAAAAAAAATGCTCATTGAAAAACCCTGATGATTTTTAGCATTTCAAATAAATTGTGTACAGTTACGGTCATTTGTTAACTATTTTGGAGACTGCGAGCTGATCATTATCTCTCTTTTTCAGATAACAAAATGTATCTACCTTCTCCCAGAGTGTAAACTAATCTGGTGGCTGGAAAAAGCAAACAAACAAACAAAGATCTGTTAAGAAAGATCTGATTTTTCAAATGGCGCATACCATTCCTTGAAACAGAGGTGATGAATAGGTAGAGACAAAAGCATCAAACATCCAGGCAGGACCTGTTTATCTCTGGGCAGAAATCTGTTCAATTCCATGATAAAACAAGGTTTGAAGTCAGGGATTCAATTTCACAAACTAAACAGACGTGTGCACACACATGTGCACACTGTGCATGTCCCAGTGCACACACGCAGAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACACACAACCCATTTCATAGGGACACACGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAGTGCACACACGCACAACCCATTTCGTAGGGACACACATGTGCACACTGCATGCCCCAATGCACAGACACACAACCCATTTTGTAGGGTCCTAGCAGAATTTTCTCTGTAGGAAAAGCACTCAATCT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:lnc-SOX11-3]]

Revision as of 12:10, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-SOX11-3:9

Source

LNCipedia2.1

Same with

NONHSAT068834

Classification

intergenic

Length

3463 nt

Genomic location

chr2+:6122110..6128364

Exon number

3

Exons

6122110..6122204,6122430..6122989,6125557..6128364

Genome context

Sequence
000001 ATCCAGAGAC CACACTAAAA TGGTGGCTGA CGTGGAGACA GAGGAAGCTC CTTTCTAGTT ATGGCCACAA GGCAGGATGC 000080
000081 TGAGGTGTTG TCTAGGCTCA GTTGGATCTC CAAGTGGCGG TACCGTTCTC TCCACTTCAA AAATACACAG AAACATGTGG 000160
000161 AAATGTTCTG TCATCCAGAA TGAAAAGCAT GTGCACCAAA TTTTCACAGA CCTGATTCGA ATGTAGATAA AAGTGCAAAA 000240
000241 TCCAGAGGAG GGAACACGCT ATAGAAATCC TGTCTTCTAT ACTATAATTT AATCATCGTG TGCCACAGAA TGTCTTTGCA 000320
000321 TAAATTACAA CCACAATAAT AGCATCACTT TCACAAAAGG TGGCCTCTAA TCGATTTGAC TCTCCAAGAG ATGGCTGGGT 000400
000401 TTTTCAAAGC AGAGAAATGA TGACCTGCAG TCTTAAAGAG CTGTTGATTG CACCTGGGGC TCCCGTGGCC GGCGCCCATC 000480
000481 GAGCAGCCCA TCCTGGCTGT TCCCTTGTTC AGCTGATTTT CTTTTTTATC TTGACATTTG CTAACCGCTT GGTTTTTATT 000560
000561 TTCCGGGAAG AGAGGATTAT TGGCAACTGG CACCACCCCC ATGTCTGGAG GAGGGACGTT TCTAGGATGA CCCCCAGAGT 000640
000641 GGAGAAATAG CCGAGCTCAT GAGGCAACCC ACACAGGCAG GCTGGAGAGG AGTGGCAAGA AGCTCACCTT CGGACAGTAG 000720
000721 TGAGCAGAGC AACAGAGGCC CCCAGAGACT TCGCACAACG GAAAAGAGAT CAACTCCCGC ATTTGCAGGG GACGTGAAAG 000800
000801 TGCAATACTG TGAGGAACAA AAGGAAGCCT CATCTCTGGA AGCCGGGAGG AAAAACAGTC GGTGTAGACA GCAGCGGCAG 000880
000881 GGACCAGAGC TGACCAGAAG GCTGGGTCCC AGCAACAATT AGAGACAGGC AGCAGCTGAG GCCCCTTCTC TGAGAACCAT 000960
000961 TTCAATTGCA CAGTGGCCAC AGAAGGCTCC ATTGGCCCGG CAGCCAGCTC TGCAGAGCCA TTTGTCCACA AGGAAAATAA 001040
001041 TAGCCCCGGC CTCATTGCTT TGGGCTGCAG GGAGGACAAT GACCCACCAT GAAAAGAGTT AAAAAGATTC TGGGGAAGGG 001120
001121 GAAAGGCAGG CCCACACGGT GGCAATTCAA GATCTTTTGG ATGCCGTGAG CGTGTTCTTT AATTAAGCCC CTCTTCTTCA 001200
001201 GCTCATCCTG CAGAAACGCA CCTGCTTCCC ATCTGCCATC CAAAACGGCA AGCACAAGAA TGACTTCACA CTGTCACTTT 001280
001281 CAGAGTTCCG CTGTGGCCCA CAGTGATTTT TCAAGAAAGG CAGCCACAGA CTCGCTCGCG CTTTCTCTTT CTCCTTTCCT 001360
001361 CTGAAAGACT CTATAAAAAC CACATTAAAA AGTGTGTGAG CCAAGCAATT TCATTTATCA AAGGAAGAAG GTCATCCATA 001440
001441 GCATTCATTC TAAGAATATC AGGCACACGG CCAGCCCTGG ACACAAGGCA TGAAGACCAG AGGGCCCTTT ATTGACCTAA 001520
001521 TCTCTATTTT GTCGCCAAAC TGCATCTGTG TCTGAAAGCT GGGACACACA ATATTTCCCT CTACCAAAAT AATTTTATTT 001600
001601 TCTGCAGCAG CATGTAACAA ACAATTAATG GTGGTAACAT GGGCTTCTGT CATTTTCTGA ACAACCCAGT TCTGTTTGGT 001680
001681 GTTACTGCAG TGGTTGTTAT TTTGGGTGGT TCTGTGCTTA TTCCATTCTG CCAATTGGTC CCATTCGCAT GGGCGTGAGC 001760
001761 CCGTGCCGTC ATCTACCACC TTGGAATCCA TGTTATTGCC AGAACTGTGT GGGGCCTTGC TTGAGGGCCT GTCCCCTGTC 001840
001841 CTCTTCACAG ATGTTTCTGT GCCTTCAGGG AGAGGACTGA TTGTGCTGTC TCCCTCTCCC ACCCGTGTCT GCTGTCTCCA 001920
001921 AAACTAAGGG AGGCTGCGGT GAAACCAGCC TGGCCCAGGT TCCTCTGGTG CCTGCCGTGG CTCAAATTAT CCAAACTACA 002000
002001 GTGGCTGATT CCCAGCGACC CATCCCTTAG TGCCCTTGTG CCCCGTTGAA GAAGTGGCCC ATGTTATGAA TAGGGAAGCT 002080
002081 AAGGTCATTA AGAATTTGTG CAGGCGTACA AAGAAAGTGC AAGTCAGAGA TCCTTGTCTC AGCTACTTTG CTTGAAAAAT 002160
002161 GACTCCATGC TCTGAGATGC TATAAATGGA GCAAACAGTG TGAAGTGGTT CTCCCCCTCC AAGAAACTGC CCCCTGATGC 002240
002241 GTTCCCCCAT TAGACACCTG CTCCTCCAAG CCTGGTCTTC TCTCTGCAAC CACTTCCCCT ATGCCTCTCC CCACCCACCA 002320
002321 TGCATGACTC CTTGTCACAC ACATGATCTC TGGTCCTACC TTGCACTTGG TGCTGGGGGC TGTGATTCCC TCTGCCTCTG 002400
002401 TCTCCCCACA TCGTCCCTGA CATCACCTTT CACCGTGCAC TGGTCTCGCT TCCTCGGGAA CTCTATGAAT GGCCTTGTTC 002480
002481 TCTGATTATT TGATTATTCC ATTATCAACC CAAAGCTCAC TGGGTCTATG GGGCTGAGAG GTCGTTTTTA TTACATCATT 002560
002561 TTAATTATTC AGATAAAAGA CTCGCAGGCA CAGATTTATC ACCACTGCCT AAAGAAAAGC AGAGACACAC ATAATTCCAT 002640
002641 TTTGAAAATC CATTCTTAAA AGCAAAAATA TGATTCAGTT GAAGGTATTC AGAAAAAAAA ATGCTCATTG AAAAACCCTG 002720
002721 ATGATTTTTA GCATTTCAAA TAAATTGTGT ACAGTTACGG TCATTTGTTA ACTATTTTGG AGACTGCGAG CTGATCATTA 002800
002801 TCTCTCTTTT TCAGATAACA AAATGTATCT ACCTTCTCCC AGAGTGTAAA CTAATCTGGT GGCTGGAAAA AGCAAACAAA 002880
002881 CAAACAAAGA TCTGTTAAGA AAGATCTGAT TTTTCAAATG GCGCATACCA TTCCTTGAAA CAGAGGTGAT GAATAGGTAG 002960
002961 AGACAAAAGC ATCAAACATC CAGGCAGGAC CTGTTTATCT CTGGGCAGAA ATCTGTTCAA TTCCATGATA AAACAAGGTT 003040
003041 TGAAGTCAGG GATTCAATTT CACAAACTAA ACAGACGTGT GCACACACAT GTGCACACTG TGCATGTCCC AGTGCACACA 003120
003121 CGCAGAACCC ATTTCGTAGG GACACACATG TGCACACTGC ATGCCCCAGT GCACACACGC ACAACCCATT TCGTAGGGAC 003200
003201 ACACATGTGC ACACTGCATG CCCCAGTGCA CACACACACA ACCCATTTCA TAGGGACACA CGTGCACACT GCATGCCCCA 003280
003281 GTGCACACAC GCACAACCCA TTTCGTAGGG ACACACATGT GCACACTGCA TGCCCCAGTG CACACACGCA CAACCCATTT 003360
003361 CGTAGGGACA CACATGTGCA CACTGCATGC CCCAATGCAC AGACACACAA CCCATTTTGT AGGGTCCTAG CAGAATTTTC 003440
003441 TCTGTAGGAA AAGCACTCAA TCT
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