Difference between revisions of "NONHSAT004924"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AATACAGGAGTGTTTATGGTTGGGTTGAGACACATTCAGTAGCTGAGTGATTGACAGCAAGAGGAGCAAGACATGAGGTAGATTTGTATTATATTCTCAGTGAAACGGGATAGCTTTAGAAGCTTTTTAATAAAAAGGATATATGATCTAAATTTCCTACTGTTAATAATTATCAAATATATGGCAATGCTGGACTTTAGCTGATCATCGTGCTTCTGGAAAACAACAAAAATTGAGATATCTGTTCACCACTTTGTGTGTCCAAGGACCACCTACTTTTTACATGTGACAAGAACTACCCACCTCCACTCTTCAGGATAGAACATGCTGAAGAAAAGAGTTGCAATGAGAAAATATATGGGAACAAAATACCTATGCAATGCAGAAGTCTGCATAACTGAACCACTCAGAGGAAAAAGTTTCCCTCCCAGGCTGGAGTACAATGGCGCGACCTCGGCTCACTGCAACTTCCACCTCCCAGTTCAAGCAATTCTCCCACCTCAGCTTCCTTAGTAGCTGGGATTACAAGTGCCTGACACCAGGCCAAGCTATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATTTTGACCAGGCTGGTCTCAAACTCCTGACCTCAGTCCATCGGTCCACCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCATGAGCCACCGCTCCTGGCCTCAAGTTTAATTCTTAAGTGAGTCAATCAGTTATAGTTCTGTTCAAAGCTTTCAGTGCACCTAAAATTTCATCCAACATCTATTATCTTTCATCATATGCTAAAACAGCTTGAAGATGTATATGATTTTATAAAAAATAATCTATAAAACAAAACAACCAAATTAAGGGTTTACATTTTAAAGCACCAATATTCACCTATAGTTGGTGAATGTACAGTTAGAATGAAAAAAAATAGAATTTTGGTGAATTCTGAAATGGTTCCACCCTATCCAAACAAGTTGTATTAATGCATGTATACATTTCTTAATAGATAAAGTACTCGAATTGCTACAAATACAGAAGCTTACAAGTTTCCAGTGAGAATAGGCTCTGTCAAAAACTTTGCTGTATATTGATTAATTTTGTTACTATAAAACAAAAAGATATCTTTCAATTGAAAAATATCAAATGCAAAGTTTTGAATTATAAAAGCAGCTTCAAGCAAATAATAATTTTTACCCAGCATCAAAATTTACATATTTAAAGGGCATAAGCAAGCATTGGGCACAGATAAAGCATTCTTTTCCCGGAGGATCCCAAAACCAACAGACGGAGCAACAAAAACTCATTTTCCTCCTATATTAACATGTATTTCAATTTTGGATTAAGAAGTTTTGACAATGTGTGCAGAAACACAATTCACAAAAGGAAACTATTATGGTTTTGGAGACTTTTTCTTTTATATACTGTTGATTGCATTGAGAAAAAAATTATTTATGGGCTTCTCCCTATTTTCAAGCCAGCCAGCTATCCTAAATTCATATGTTTTATTTTAAATTATAACAAATCAAGACCATGATATTATCGTCTGCTCCAGACAACAGCCTTTCCCTAGTTTATACCATTAACATTTTATTAATGGTATTTATATTTGGTATTAGTAGGAGGTCATTATAATTTTACAGGAATGTCTAATTGAGATAATTAATTCACTCTTTTATGTTAATACTTTTCTACCTAGCATCACATAAGATAATGGAGGTGTGATTTTTTTCAGTAATTTTTGCTAGTTTAATAAATGACTTAATCCTCCTCATCCATATTCATTTTGAAATTATACTTAGTATTTTAATATAAAAGAATAAGATAGCATAATACTG</dnaseq>| | sequence = <dnaseq>AATACAGGAGTGTTTATGGTTGGGTTGAGACACATTCAGTAGCTGAGTGATTGACAGCAAGAGGAGCAAGACATGAGGTAGATTTGTATTATATTCTCAGTGAAACGGGATAGCTTTAGAAGCTTTTTAATAAAAAGGATATATGATCTAAATTTCCTACTGTTAATAATTATCAAATATATGGCAATGCTGGACTTTAGCTGATCATCGTGCTTCTGGAAAACAACAAAAATTGAGATATCTGTTCACCACTTTGTGTGTCCAAGGACCACCTACTTTTTACATGTGACAAGAACTACCCACCTCCACTCTTCAGGATAGAACATGCTGAAGAAAAGAGTTGCAATGAGAAAATATATGGGAACAAAATACCTATGCAATGCAGAAGTCTGCATAACTGAACCACTCAGAGGAAAAAGTTTCCCTCCCAGGCTGGAGTACAATGGCGCGACCTCGGCTCACTGCAACTTCCACCTCCCAGTTCAAGCAATTCTCCCACCTCAGCTTCCTTAGTAGCTGGGATTACAAGTGCCTGACACCAGGCCAAGCTATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATTTTGACCAGGCTGGTCTCAAACTCCTGACCTCAGTCCATCGGTCCACCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCATGAGCCACCGCTCCTGGCCTCAAGTTTAATTCTTAAGTGAGTCAATCAGTTATAGTTCTGTTCAAAGCTTTCAGTGCACCTAAAATTTCATCCAACATCTATTATCTTTCATCATATGCTAAAACAGCTTGAAGATGTATATGATTTTATAAAAAATAATCTATAAAACAAAACAACCAAATTAAGGGTTTACATTTTAAAGCACCAATATTCACCTATAGTTGGTGAATGTACAGTTAGAATGAAAAAAAATAGAATTTTGGTGAATTCTGAAATGGTTCCACCCTATCCAAACAAGTTGTATTAATGCATGTATACATTTCTTAATAGATAAAGTACTCGAATTGCTACAAATACAGAAGCTTACAAGTTTCCAGTGAGAATAGGCTCTGTCAAAAACTTTGCTGTATATTGATTAATTTTGTTACTATAAAACAAAAAGATATCTTTCAATTGAAAAATATCAAATGCAAAGTTTTGAATTATAAAAGCAGCTTCAAGCAAATAATAATTTTTACCCAGCATCAAAATTTACATATTTAAAGGGCATAAGCAAGCATTGGGCACAGATAAAGCATTCTTTTCCCGGAGGATCCCAAAACCAACAGACGGAGCAACAAAAACTCATTTTCCTCCTATATTAACATGTATTTCAATTTTGGATTAAGAAGTTTTGACAATGTGTGCAGAAACACAATTCACAAAAGGAAACTATTATGGTTTTGGAGACTTTTTCTTTTATATACTGTTGATTGCATTGAGAAAAAAATTATTTATGGGCTTCTCCCTATTTTCAAGCCAGCCAGCTATCCTAAATTCATATGTTTTATTTTAAATTATAACAAATCAAGACCATGATATTATCGTCTGCTCCAGACAACAGCCTTTCCCTAGTTTATACCATTAACATTTTATTAATGGTATTTATATTTGGTATTAGTAGGAGGTCATTATAATTTTACAGGAATGTCTAATTGAGATAATTAATTCACTCTTTTATGTTAATACTTTTCTACCTAGCATCACATAAGATAATGGAGGTGTGATTTTTTTCAGTAATTTTTGCTAGTTTAATAAATGACTTAATCCTCCTCATCCATATTCATTTTGAAATTATACTTAGTATTTTAATATAAAAGAATAAGATAGCATAATACTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG002277]] |
Revision as of 08:17, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT004924 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1824 nt |
| Genomic location |
chr1-:106144774..106161580 |
| Exon number |
4 |
| Exons |
106144774..106146180,106146785..106146887,106148557..106148711,106161397..106161580 |
| Genome context |
|
| Sequence |
000001 AATACAGGAG TGTTTATGGT TGGGTTGAGA CACATTCAGT AGCTGAGTGA TTGACAGCAA GAGGAGCAAG ACATGAGGTA 000080
000081 GATTTGTATT ATATTCTCAG TGAAACGGGA TAGCTTTAGA AGCTTTTTAA TAAAAAGGAT ATATGATCTA AATTTCCTAC 000160 000161 TGTTAATAAT TATCAAATAT ATGGCAATGC TGGACTTTAG CTGATCATCG TGCTTCTGGA AAACAACAAA AATTGAGATA 000240 000241 TCTGTTCACC ACTTTGTGTG TCCAAGGACC ACCTACTTTT TACATGTGAC AAGAACTACC CACCTCCACT CTTCAGGATA 000320 000321 GAACATGCTG AAGAAAAGAG TTGCAATGAG AAAATATATG GGAACAAAAT ACCTATGCAA TGCAGAAGTC TGCATAACTG 000400 000401 AACCACTCAG AGGAAAAAGT TTCCCTCCCA GGCTGGAGTA CAATGGCGCG ACCTCGGCTC ACTGCAACTT CCACCTCCCA 000480 000481 GTTCAAGCAA TTCTCCCACC TCAGCTTCCT TAGTAGCTGG GATTACAAGT GCCTGACACC AGGCCAAGCT ATTTTTGTAT 000560 000561 TTTTAGTAGA GACGGGGTTT CACCATTTTG ACCAGGCTGG TCTCAAACTC CTGACCTCAG TCCATCGGTC CACCTCGGCC 000640 000641 TCCCAAAGTG CTGGGATTGC AGGCATGAGC CACCGCTCCT GGCCTCAAGT TTAATTCTTA AGTGAGTCAA TCAGTTATAG 000720 000721 TTCTGTTCAA AGCTTTCAGT GCACCTAAAA TTTCATCCAA CATCTATTAT CTTTCATCAT ATGCTAAAAC AGCTTGAAGA 000800 000801 TGTATATGAT TTTATAAAAA ATAATCTATA AAACAAAACA ACCAAATTAA GGGTTTACAT TTTAAAGCAC CAATATTCAC 000880 000881 CTATAGTTGG TGAATGTACA GTTAGAATGA AAAAAAATAG AATTTTGGTG AATTCTGAAA TGGTTCCACC CTATCCAAAC 000960 000961 AAGTTGTATT AATGCATGTA TACATTTCTT AATAGATAAA GTACTCGAAT TGCTACAAAT ACAGAAGCTT ACAAGTTTCC 001040 001041 AGTGAGAATA GGCTCTGTCA AAAACTTTGC TGTATATTGA TTAATTTTGT TACTATAAAA CAAAAAGATA TCTTTCAATT 001120 001121 GAAAAATATC AAATGCAAAG TTTTGAATTA TAAAAGCAGC TTCAAGCAAA TAATAATTTT TACCCAGCAT CAAAATTTAC 001200 001201 ATATTTAAAG GGCATAAGCA AGCATTGGGC ACAGATAAAG CATTCTTTTC CCGGAGGATC CCAAAACCAA CAGACGGAGC 001280 001281 AACAAAAACT CATTTTCCTC CTATATTAAC ATGTATTTCA ATTTTGGATT AAGAAGTTTT GACAATGTGT GCAGAAACAC 001360 001361 AATTCACAAA AGGAAACTAT TATGGTTTTG GAGACTTTTT CTTTTATATA CTGTTGATTG CATTGAGAAA AAAATTATTT 001440 001441 ATGGGCTTCT CCCTATTTTC AAGCCAGCCA GCTATCCTAA ATTCATATGT TTTATTTTAA ATTATAACAA ATCAAGACCA 001520 001521 TGATATTATC GTCTGCTCCA GACAACAGCC TTTCCCTAGT TTATACCATT AACATTTTAT TAATGGTATT TATATTTGGT 001600 001601 ATTAGTAGGA GGTCATTATA ATTTTACAGG AATGTCTAAT TGAGATAATT AATTCACTCT TTTATGTTAA TACTTTTCTA 001680 001681 CCTAGCATCA CATAAGATAA TGGAGGTGTG ATTTTTTTCA GTAATTTTTG CTAGTTTAAT AAATGACTTA ATCCTCCTCA 001760 001761 TCCATATTCA TTTTGAAATT ATACTTAGTA TTTTAATATA AAAGAATAAG ATAGCATAAT ACTG |
Predicted Small Protein
| Name | NONHSAT004924_smProtein_1310:1522 |
| Length | 71 |
| Molecular weight | 8615.2565 |
| Aromaticity | 0.214285714286 |
| Instability index | 50.5771428571 |
| Isoelectric point | 9.89801025391 |
| Runs | 7 |
| Runs residual | 0.0448373408769 |
| Runs probability | 0.0681101269336 |
| Amino acid sequence | MYFNFGLRSFDNVCRNTIHKRKLLWFWRLFLLYTVDCIEKKIIYGLLPIFKPASYPKFIC FILNYNKSRP |
| Secondary structure | LEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLEEE EEELLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooo oooooooooo |
