Difference between revisions of "NONHSAT007465"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TCTGACGTCCCAGGGCTCAAGCGCGGAGGACATGTGGAACTCCACTCCAAAAGCGGCGGCTTGCGGCGGAGCTCTCTCTAGTGAGGCGGCCAGCTGGCGTTCGTGGCACACTTGCTGTCGGCTCCGCTCATCTGTTGGGAATGCGTCCTGTGGGCCTAGTCCTCCGCTGGAAGAAACGCGCTGTTCTCCCCAACCACCGTTTATCATTCTTATTCACCGTCTCCGGAATGTCCATTCAGTTTCCGCTCCTGAGAGACTTAGTGACTGAGGCCAGGCAAAGATTTCACCTTGGGGAGGGGGAACGTTAAACCTTTCCTCCAGCAGCTTTCGTGTTTTAAATTGTATTCATCCGCCATGGAAAGACATCAGAAGCCCAGGATCTAAGAGACAGACTGAAATGAAGAAAGTAGATAATATTGTGAGAATAATGAACAAGCTGGTCACTGAACAGCAGAACCGTAATGGAGTCCCAGTTAAAGGGTTTTAACTTTATTTCGTCACTTTTTGCAAGCATGATACAAAGAAAACAAACACCTAACTACGCTACGGTTTATAGTTAAAAGGAAGGTGGAAGATCCTGAGTCATTACAGCAATCACAAAACATGATGGATTTCTTCATTTAAAAACACAAAAGAGGTCTTGGCATAGTTTTCAAGGGCAAAGCATGACAAGACTCTCCAGTGCTTTCTTTCATCCCCCTCTGTGTGCCTTTTTCTGCCTGACTCACAGCCTGGCTCAATCCTAATCTTTCTACTGCAAAGATGCAGCATTTAAAGCAATTTTTCCTGTGCAGTATTTGTAGAATGACAGATCCTGCCAGAAGCTCTTGGAAACATTTTGGAACTATCTTGCTTTTCTGTATGTTATGATCCATCTAGCACCGTTTTCCTCCTGTGGTAGCAAATGACACTTTTTTCAAGCATCAGCAGCAGAAATGAGTCTACCAGATGGAATAAGATACTGGTAAAGGGAAAGATTTGTTTCTAAGACTGCACAAATGAATGCACCCAAATCTGTGAGTTGATTAATCTGTGAAGAAATACAACTGGCAGTATTTACATATCTcaatgagtctcaaagtgtggtcgaggaagccctgggggtccttgggaccctttcagaggttccacgagctcaaatctattttcataaccatgctaagtctttatttccttttccactccagaggctatataatgtctgatgacatcatcgctttataggatgagagaatacgtgcttgtatattcttgtgtttgtaagactttccaggtttaatttattaccatatggcaattttcaataagtataacccacaaaacccaacagatttttggggcacctctaacaagggtcctaagaccaaaatgtttgaggactgctAATCGATATTATTCAATTGTCTAGTCCCCTAAACTCCAACCCTTCTTATCAGGACTACAGAGAGAAAACAGGTGGTCTTCTTGACAATCGCTTTGTATTTACATTCAGTGCTTTAGTAGAAGAGAAGAAAGAAAGAGAAAGCAAGCCAGAGAGGCCTCGGAAAGAGAAGCCTACTTATTAAAAATAGCTTTCTggctggtcacggtggctcactcctgtaatcccagcactttgggaggccgagacgggcggatcacttgaggtcaggagtctcagaccagccaggccaacatggcgaaaacacgtctctactaaaaatgcaaaaattagccgggcatagtggcatgcacgcctgtagtcccagctacttgggaggcagaggcaggagagccacttgaacccaggaggcggaggttgcagtgagcggagagcgagactcgcgagtactcgtctcaaaaaacaaaacaacaataacaaaaaCAGCTTTCCATCCCTTCCCTGAGGCTTGGGTACCTGAACCACGTTAATCTGTAAATCACTGCTTCTGTAACTTTTCCTTGGTATAAATCACATAGGCAATGAGGTTGGGTATAAACAGTAATTGTCCTTGAATTGGGTAGATGTTTTCTTATTATTTTTGTCTAAGAGGTCATtgcgataggcagaattctaagaatgatccccagtgacgcttgcccttgtataacccccacccatttgagtgtgaggtgaaacctatgaatttgatgaggcaatactcctgttattatgttacgttttatgacagatgtgagattttccaggtgggcccaatctaatcacaacagccctttaaaagcagagattttccgtctgctaagagcagaagaggaagtcagagagatttgaaggatgagaagaatttgacgtgctgctgttggagggggctacataccaagaaatgtgggcatcctatagcaactgaaactggctcctggctgacagccagcagagaatcaggatatcagtcccagaatcataaggaactgaattctgctaaaaacctaaatgagcttggaagtgggattcttccgagaagagcccagccgggtcaccatcttaattttggtctgcgaaaccgtaagcagagaatccactcaagcccacctggatctacagaactgtgagctaagctgatgtggtaatattttaaagccgctaaatttttgttcatttgttgtgcagcaataggaatctaacacaAAGGTAAATAGAATATAttttttaaatcgaggcaatattcacataacataaaattaaccattaattaagtgtacaacccagtggcattactacattcataatattgtgaaaccatcacttctgtctaattccaagacattttcaccaccctacaggaaactgatacccattaagcagtcactccctgttccctcctccccttagtccctggcaaacactaatatgctttctgcctatggatttgtctattctggaggttacatacaatttgtgaccttttgtgtctagcttctttcacttagtttaatgttttaaagattcatccacattgtagcatgtatcagtacttcgttcctttttatggctaagtaatatgtgtatatacaacattttgtttatccatcaattgataacatttggattatttttacttttg</dnaseq>| | sequence = <dnaseq>TCTGACGTCCCAGGGCTCAAGCGCGGAGGACATGTGGAACTCCACTCCAAAAGCGGCGGCTTGCGGCGGAGCTCTCTCTAGTGAGGCGGCCAGCTGGCGTTCGTGGCACACTTGCTGTCGGCTCCGCTCATCTGTTGGGAATGCGTCCTGTGGGCCTAGTCCTCCGCTGGAAGAAACGCGCTGTTCTCCCCAACCACCGTTTATCATTCTTATTCACCGTCTCCGGAATGTCCATTCAGTTTCCGCTCCTGAGAGACTTAGTGACTGAGGCCAGGCAAAGATTTCACCTTGGGGAGGGGGAACGTTAAACCTTTCCTCCAGCAGCTTTCGTGTTTTAAATTGTATTCATCCGCCATGGAAAGACATCAGAAGCCCAGGATCTAAGAGACAGACTGAAATGAAGAAAGTAGATAATATTGTGAGAATAATGAACAAGCTGGTCACTGAACAGCAGAACCGTAATGGAGTCCCAGTTAAAGGGTTTTAACTTTATTTCGTCACTTTTTGCAAGCATGATACAAAGAAAACAAACACCTAACTACGCTACGGTTTATAGTTAAAAGGAAGGTGGAAGATCCTGAGTCATTACAGCAATCACAAAACATGATGGATTTCTTCATTTAAAAACACAAAAGAGGTCTTGGCATAGTTTTCAAGGGCAAAGCATGACAAGACTCTCCAGTGCTTTCTTTCATCCCCCTCTGTGTGCCTTTTTCTGCCTGACTCACAGCCTGGCTCAATCCTAATCTTTCTACTGCAAAGATGCAGCATTTAAAGCAATTTTTCCTGTGCAGTATTTGTAGAATGACAGATCCTGCCAGAAGCTCTTGGAAACATTTTGGAACTATCTTGCTTTTCTGTATGTTATGATCCATCTAGCACCGTTTTCCTCCTGTGGTAGCAAATGACACTTTTTTCAAGCATCAGCAGCAGAAATGAGTCTACCAGATGGAATAAGATACTGGTAAAGGGAAAGATTTGTTTCTAAGACTGCACAAATGAATGCACCCAAATCTGTGAGTTGATTAATCTGTGAAGAAATACAACTGGCAGTATTTACATATCTcaatgagtctcaaagtgtggtcgaggaagccctgggggtccttgggaccctttcagaggttccacgagctcaaatctattttcataaccatgctaagtctttatttccttttccactccagaggctatataatgtctgatgacatcatcgctttataggatgagagaatacgtgcttgtatattcttgtgtttgtaagactttccaggtttaatttattaccatatggcaattttcaataagtataacccacaaaacccaacagatttttggggcacctctaacaagggtcctaagaccaaaatgtttgaggactgctAATCGATATTATTCAATTGTCTAGTCCCCTAAACTCCAACCCTTCTTATCAGGACTACAGAGAGAAAACAGGTGGTCTTCTTGACAATCGCTTTGTATTTACATTCAGTGCTTTAGTAGAAGAGAAGAAAGAAAGAGAAAGCAAGCCAGAGAGGCCTCGGAAAGAGAAGCCTACTTATTAAAAATAGCTTTCTggctggtcacggtggctcactcctgtaatcccagcactttgggaggccgagacgggcggatcacttgaggtcaggagtctcagaccagccaggccaacatggcgaaaacacgtctctactaaaaatgcaaaaattagccgggcatagtggcatgcacgcctgtagtcccagctacttgggaggcagaggcaggagagccacttgaacccaggaggcggaggttgcagtgagcggagagcgagactcgcgagtactcgtctcaaaaaacaaaacaacaataacaaaaaCAGCTTTCCATCCCTTCCCTGAGGCTTGGGTACCTGAACCACGTTAATCTGTAAATCACTGCTTCTGTAACTTTTCCTTGGTATAAATCACATAGGCAATGAGGTTGGGTATAAACAGTAATTGTCCTTGAATTGGGTAGATGTTTTCTTATTATTTTTGTCTAAGAGGTCATtgcgataggcagaattctaagaatgatccccagtgacgcttgcccttgtataacccccacccatttgagtgtgaggtgaaacctatgaatttgatgaggcaatactcctgttattatgttacgttttatgacagatgtgagattttccaggtgggcccaatctaatcacaacagccctttaaaagcagagattttccgtctgctaagagcagaagaggaagtcagagagatttgaaggatgagaagaatttgacgtgctgctgttggagggggctacataccaagaaatgtgggcatcctatagcaactgaaactggctcctggctgacagccagcagagaatcaggatatcagtcccagaatcataaggaactgaattctgctaaaaacctaaatgagcttggaagtgggattcttccgagaagagcccagccgggtcaccatcttaattttggtctgcgaaaccgtaagcagagaatccactcaagcccacctggatctacagaactgtgagctaagctgatgtggtaatattttaaagccgctaaatttttgttcatttgttgtgcagcaataggaatctaacacaAAGGTAAATAGAATATAttttttaaatcgaggcaatattcacataacataaaattaaccattaattaagtgtacaacccagtggcattactacattcataatattgtgaaaccatcacttctgtctaattccaagacattttcaccaccctacaggaaactgatacccattaagcagtcactccctgttccctcctccccttagtccctggcaaacactaatatgctttctgcctatggatttgtctattctggaggttacatacaatttgtgaccttttgtgtctagcttctttcacttagtttaatgttttaaagattcatccacattgtagcatgtatcagtacttcgttcctttttatggctaagtaatatgtgtatatacaacattttgtttatccatcaattgataacatttggattatttttacttttg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG003413]] |
Revision as of 09:27, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT007465 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
3062 nt |
| Genomic location |
chr1+:169455353..169458414 |
| Exon number |
1 |
| Exons |
169455353..169458414 |
| Genome context |
|
| Sequence |
000001 TCTGACGTCC CAGGGCTCAA GCGCGGAGGA CATGTGGAAC TCCACTCCAA AAGCGGCGGC TTGCGGCGGA GCTCTCTCTA 000080
000081 GTGAGGCGGC CAGCTGGCGT TCGTGGCACA CTTGCTGTCG GCTCCGCTCA TCTGTTGGGA ATGCGTCCTG TGGGCCTAGT 000160 000161 CCTCCGCTGG AAGAAACGCG CTGTTCTCCC CAACCACCGT TTATCATTCT TATTCACCGT CTCCGGAATG TCCATTCAGT 000240 000241 TTCCGCTCCT GAGAGACTTA GTGACTGAGG CCAGGCAAAG ATTTCACCTT GGGGAGGGGG AACGTTAAAC CTTTCCTCCA 000320 000321 GCAGCTTTCG TGTTTTAAAT TGTATTCATC CGCCATGGAA AGACATCAGA AGCCCAGGAT CTAAGAGACA GACTGAAATG 000400 000401 AAGAAAGTAG ATAATATTGT GAGAATAATG AACAAGCTGG TCACTGAACA GCAGAACCGT AATGGAGTCC CAGTTAAAGG 000480 000481 GTTTTAACTT TATTTCGTCA CTTTTTGCAA GCATGATACA AAGAAAACAA ACACCTAACT ACGCTACGGT TTATAGTTAA 000560 000561 AAGGAAGGTG GAAGATCCTG AGTCATTACA GCAATCACAA AACATGATGG ATTTCTTCAT TTAAAAACAC AAAAGAGGTC 000640 000641 TTGGCATAGT TTTCAAGGGC AAAGCATGAC AAGACTCTCC AGTGCTTTCT TTCATCCCCC TCTGTGTGCC TTTTTCTGCC 000720 000721 TGACTCACAG CCTGGCTCAA TCCTAATCTT TCTACTGCAA AGATGCAGCA TTTAAAGCAA TTTTTCCTGT GCAGTATTTG 000800 000801 TAGAATGACA GATCCTGCCA GAAGCTCTTG GAAACATTTT GGAACTATCT TGCTTTTCTG TATGTTATGA TCCATCTAGC 000880 000881 ACCGTTTTCC TCCTGTGGTA GCAAATGACA CTTTTTTCAA GCATCAGCAG CAGAAATGAG TCTACCAGAT GGAATAAGAT 000960 000961 ACTGGTAAAG GGAAAGATTT GTTTCTAAGA CTGCACAAAT GAATGCACCC AAATCTGTGA GTTGATTAAT CTGTGAAGAA 001040 001041 ATACAACTGG CAGTATTTAC ATATCTcaat gagtctcaaa gtgtggtcga ggaagccctg ggggtccttg ggaccctttc 001120 001121 agaggttcca cgagctcaaa tctattttca taaccatgct aagtctttat ttccttttcc actccagagg ctatataatg 001200 001201 tctgatgaca tcatcgcttt ataggatgag agaatacgtg cttgtatatt cttgtgtttg taagactttc caggtttaat 001280 001281 ttattaccat atggcaattt tcaataagta taacccacaa aacccaacag atttttgggg cacctctaac aagggtccta 001360 001361 agaccaaaat gtttgaggac tgctAATCGA TATTATTCAA TTGTCTAGTC CCCTAAACTC CAACCCTTCT TATCAGGACT 001440 001441 ACAGAGAGAA AACAGGTGGT CTTCTTGACA ATCGCTTTGT ATTTACATTC AGTGCTTTAG TAGAAGAGAA GAAAGAAAGA 001520 001521 GAAAGCAAGC CAGAGAGGCC TCGGAAAGAG AAGCCTACTT ATTAAAAATA GCTTTCTggc tggtcacggt ggctcactcc 001600 001601 tgtaatccca gcactttggg aggccgagac gggcggatca cttgaggtca ggagtctcag accagccagg ccaacatggc 001680 001681 gaaaacacgt ctctactaaa aatgcaaaaa ttagccgggc atagtggcat gcacgcctgt agtcccagct acttgggagg 001760 001761 cagaggcagg agagccactt gaacccagga ggcggaggtt gcagtgagcg gagagcgaga ctcgcgagta ctcgtctcaa 001840 001841 aaaacaaaac aacaataaca aaaaCAGCTT TCCATCCCTT CCCTGAGGCT TGGGTACCTG AACCACGTTA ATCTGTAAAT 001920 001921 CACTGCTTCT GTAACTTTTC CTTGGTATAA ATCACATAGG CAATGAGGTT GGGTATAAAC AGTAATTGTC CTTGAATTGG 002000 002001 GTAGATGTTT TCTTATTATT TTTGTCTAAG AGGTCATtgc gataggcaga attctaagaa tgatccccag tgacgcttgc 002080 002081 ccttgtataa cccccaccca tttgagtgtg aggtgaaacc tatgaatttg atgaggcaat actcctgtta ttatgttacg 002160 002161 ttttatgaca gatgtgagat tttccaggtg ggcccaatct aatcacaaca gccctttaaa agcagagatt ttccgtctgc 002240 002241 taagagcaga agaggaagtc agagagattt gaaggatgag aagaatttga cgtgctgctg ttggaggggg ctacatacca 002320 002321 agaaatgtgg gcatcctata gcaactgaaa ctggctcctg gctgacagcc agcagagaat caggatatca gtcccagaat 002400 002401 cataaggaac tgaattctgc taaaaaccta aatgagcttg gaagtgggat tcttccgaga agagcccagc cgggtcacca 002480 002481 tcttaatttt ggtctgcgaa accgtaagca gagaatccac tcaagcccac ctggatctac agaactgtga gctaagctga 002560 002561 tgtggtaata ttttaaagcc gctaaatttt tgttcatttg ttgtgcagca ataggaatct aacacaAAGG TAAATAGAAT 002640 002641 ATAtttttta aatcgaggca atattcacat aacataaaat taaccattaa ttaagtgtac aacccagtgg cattactaca 002720 002721 ttcataatat tgtgaaacca tcacttctgt ctaattccaa gacattttca ccaccctaca ggaaactgat acccattaag 002800 002801 cagtcactcc ctgttccctc ctccccttag tccctggcaa acactaatat gctttctgcc tatggatttg tctattctgg 002880 002881 aggttacata caatttgtga ccttttgtgt ctagcttctt tcacttagtt taatgtttta aagattcatc cacattgtag 002960 002961 catgtatcag tacttcgttc ctttttatgg ctaagtaata tgtgtatata caacattttg tttatccatc aattgataac 003040 003041 atttggatta tttttacttt tg |
Predicted Small Protein
| Name | NONHSAT007465_smProtein_140:307 |
| Length | 56 |
| Molecular weight | 6460.5889 |
| Aromaticity | 0.0909090909091 |
| Instability index | 53.5927272727 |
| Isoelectric point | 11.7855834961 |
| Runs | 11 |
| Runs residual | 0.0484848484848 |
| Runs probability | 0.0403076873665 |
| Amino acid sequence | MRPVGLVLRWKKRAVLPNHRLSFLFTVSGMSIQFPLLRDLVTEARQRFHLGEGER |
| Secondary structure | LLLEEEEEEEELEEELLLLLEEEEEEELLLEEELHHHHHHHHHHHHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
