Difference between revisions of "NONHSAT016274"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AAATTTCTACAGGCTCCACCTCCTTTCATTCAAATTGAGTTCATTTTATACATGAGCTTTCCCTCATGGACATTTTAATCAGCTGCTCCATGTACCAAGAAAATGCTTTGAAACATAAGCAGACTGCATCTCTAGTAGAATCATTAGTAGAATGTAGAATTTGTTGCTGATTTATCTCTACCTAGGTAAAAGGCAGAGATGTGGATTGTAAATACAAGAGATAAACTTGCTAAAAATTATATAACTCGACATTGTCATAAATCCTATCCAACTCTTTCCCATGTAGGTACCCCACCACCACCACCCCACCACAAACACACACACACACACACACACACACACACACACGAAGAACACTCAGTAACATCTTAACAGGAATGTTAGTGTTGTAAGAATACAGTTGGAGGAAGTCACATTGACCATGGTCAGAACACTATGAATTATAGTAGTTGTAGTACCCATCGTTTTCTGGAGTGCTGACCTGCCTGCCAGTCCTTGATTCAAAAGTCATACTTCTATTATATACATCTGGTCAACTCATTCAGGTATACTACTTAAAATCAAAGCCTGCTTCTTTGTTAGTAAAATGAGTACAATAAAAACCTTATGTGGTTGTTTTGAAAATTGAATGGAAGAATACATATAAAAAGCCTGACATAGAGTAATAAACCCTATTGGTAATT</dnaseq>| | sequence = <dnaseq>AAATTTCTACAGGCTCCACCTCCTTTCATTCAAATTGAGTTCATTTTATACATGAGCTTTCCCTCATGGACATTTTAATCAGCTGCTCCATGTACCAAGAAAATGCTTTGAAACATAAGCAGACTGCATCTCTAGTAGAATCATTAGTAGAATGTAGAATTTGTTGCTGATTTATCTCTACCTAGGTAAAAGGCAGAGATGTGGATTGTAAATACAAGAGATAAACTTGCTAAAAATTATATAACTCGACATTGTCATAAATCCTATCCAACTCTTTCCCATGTAGGTACCCCACCACCACCACCCCACCACAAACACACACACACACACACACACACACACACACACGAAGAACACTCAGTAACATCTTAACAGGAATGTTAGTGTTGTAAGAATACAGTTGGAGGAAGTCACATTGACCATGGTCAGAACACTATGAATTATAGTAGTTGTAGTACCCATCGTTTTCTGGAGTGCTGACCTGCCTGCCAGTCCTTGATTCAAAAGTCATACTTCTATTATATACATCTGGTCAACTCATTCAGGTATACTACTTAAAATCAAAGCCTGCTTCTTTGTTAGTAAAATGAGTACAATAAAAACCTTATGTGGTTGTTTTGAAAATTGAATGGAAGAATACATATAAAAAGCCTGACATAGAGTAATAAACCCTATTGGTAATT</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 20:18, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT016274 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
683 nt |
| Genomic location |
chr10+:107934133..107949128 |
| Exon number |
2 |
| Exons |
107934133..107934342,107948656..107949128 |
| Genome context |
|
| Sequence |
000001 AAATTTCTAC AGGCTCCACC TCCTTTCATT CAAATTGAGT TCATTTTATA CATGAGCTTT CCCTCATGGA CATTTTAATC 000080
000081 AGCTGCTCCA TGTACCAAGA AAATGCTTTG AAACATAAGC AGACTGCATC TCTAGTAGAA TCATTAGTAG AATGTAGAAT 000160 000161 TTGTTGCTGA TTTATCTCTA CCTAGGTAAA AGGCAGAGAT GTGGATTGTA AATACAAGAG ATAAACTTGC TAAAAATTAT 000240 000241 ATAACTCGAC ATTGTCATAA ATCCTATCCA ACTCTTTCCC ATGTAGGTAC CCCACCACCA CCACCCCACC ACAAACACAC 000320 000321 ACACACACAC ACACACACAC ACACACACGA AGAACACTCA GTAACATCTT AACAGGAATG TTAGTGTTGT AAGAATACAG 000400 000401 TTGGAGGAAG TCACATTGAC CATGGTCAGA ACACTATGAA TTATAGTAGT TGTAGTACCC ATCGTTTTCT GGAGTGCTGA 000480 000481 CCTGCCTGCC AGTCCTTGAT TCAAAAGTCA TACTTCTATT ATATACATCT GGTCAACTCA TTCAGGTATA CTACTTAAAA 000560 000561 TCAAAGCCTG CTTCTTTGTT AGTAAAATGA GTACAATAAA AACCTTATGT GGTTGTTTTG AAAATTGAAT GGAAGAATAC 000640 000641 ATATAAAAAG CCTGACATAG AGTAATAAAC CCTATTGGTA ATT |
Predicted Small Protein
| Name | NONHSAT016274_smProtein_65:169 |
| Length | 35 |
| Molecular weight | 3860.5462 |
| Aromaticity | 0.0294117647059 |
| Instability index | 67.5970588235 |
| Isoelectric point | 5.50897216797 |
| Runs | 6 |
| Runs residual | 0.00967982129561 |
| Runs probability | 0.00288523817935 |
| Amino acid sequence | MDILISCSMYQENALKHKQTASLVESLVECRICC |
| Secondary structure | LLEEEELLHHHHHHHHHHHHHHHHHHHHHHHEEL |
| PRMN | - |
| PiMo | - |
