Difference between revisions of "NONHSAT022023"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>AAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAggccccggccccgccgcccccggcccgcccccgcggTGCCCTCTCTCCTCCCTCTTTGTGCGTCTcgcgccgccgccgcccgccgcgTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGGTAAATATACGTTCTGCATCCAAATGCACTTTGAGATTGTTACGATTTATTCTGAGCAAGATCTGCATTTTTTGAAAGTTTGAGATTGTAGTTATCTTTTTTGAGATGAGATACTTTCACGACTTTGGTATCATCTGTCAGTTTTTGCCCAGTGAGTTCTGCATTTGCAGCTCCTTGTTTTGGTCTGTTCGTAACTGCAGTGTTCTCCATGAGTATCAGGAAGGTAGGGTTTCACTTAGGAGTAAGAACAGTCCCCAGTCCAGCAGCCACCCTTTTCAGCTGCTGTTCATTGCCAGTTGATGAGGTGAGTGTCATCTGCCTCTCTGGACAGGCCCCAGTGGAGAACACCGCAGGTACTGTAAACCAAGTACTTTTCACAGCGTGGCCTTTCACCATAATTTTATATTTCTCCCCCTAAAATGTGGTCTTTTACTTTTTATAGGTACTTTCTG</dnaseq>| | sequence = <dnaseq>AAATGAAGTGCGCGCTGCGACACCTCCCAGCCCACCGAACTCCGCCGCCATTTCCTCGCTTGGCCTAACGGTTCGGCCAATCCCAGCGCGCATCAAGAAGGACTGAGGCTCCGCCAATCGGAGGCCGCCGATTTCGACCCTTCGCCTCGGCCCGGCCCAATCCAggccccggccccgccgcccccggcccgcccccgcggTGCCCTCTCTCCTCCCTCTTTGTGCGTCTcgcgccgccgccgcccgccgcgTGAGAGGACGGGCTCCGCGCGCTCCGGCAGCGCATTCGGGTCCCCTCCCCCCGGGAGGCTTGCGAAGGAGAAGCCGCCGCAGAGGAAAAGCAGGTGCCGGTGCCTGTCCCCGGGGGCGCCATGGCGACCGGAGCGAACGCCACGCCGTTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGACACAATGGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTTATTCCCCCTGGACTTACTCGAGAACAAGAAAGAGCTTATATAGGTAAATATACGTTCTGCATCCAAATGCACTTTGAGATTGTTACGATTTATTCTGAGCAAGATCTGCATTTTTTGAAAGTTTGAGATTGTAGTTATCTTTTTTGAGATGAGATACTTTCACGACTTTGGTATCATCTGTCAGTTTTTGCCCAGTGAGTTCTGCATTTGCAGCTCCTTGTTTTGGTCTGTTCGTAACTGCAGTGTTCTCCATGAGTATCAGGAAGGTAGGGTTTCACTTAGGAGTAAGAACAGTCCCCAGTCCAGCAGCCACCCTTTTCAGCTGCTGTTCATTGCCAGTTGATGAGGTGAGTGTCATCTGCCTCTCTGGACAGGCCCCAGTGGAGAACACCGCAGGTACTGTAAACCAAGTACTTTTCACAGCGTGGCCTTTCACCATAATTTTATATTTCTCCCCCTAAAATGTGGTCTTTTACTTTTTATAGGTACTTTCTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG008625]] |
Revision as of 13:46, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT022023 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
983 nt |
| Genomic location |
chr11-:64543518..64546235 |
| Exon number |
2 |
| Exons |
64543518..64544098,64545834..64546235 |
| Genome context |
|
| Sequence |
000001 AAATGAAGTG CGCGCTGCGA CACCTCCCAG CCCACCGAAC TCCGCCGCCA TTTCCTCGCT TGGCCTAACG GTTCGGCCAA 000080
000081 TCCCAGCGCG CATCAAGAAG GACTGAGGCT CCGCCAATCG GAGGCCGCCG ATTTCGACCC TTCGCCTCGG CCCGGCCCAA 000160 000161 TCCAggcccc ggccccgccg cccccggccc gcccccgcgg TGCCCTCTCT CCTCCCTCTT TGTGCGTCTc gcgccgccgc 000240 000241 cgcccgccgc gTGAGAGGAC GGGCTCCGCG CGCTCCGGCA GCGCATTCGG GTCCCCTCCC CCCGGGAGGC TTGCGAAGGA 000320 000321 GAAGCCGCCG CAGAGGAAAA GCAGGTGCCG GTGCCTGTCC CCGGGGGCGC CATGGCGACC GGAGCGAACG CCACGCCGTT 000400 000401 GGACTTCCCA AGTAAGAAGC GGAAGAGGAG CCGCTGGAAC CAAGACACAA TGGAACAGAA GACAGTGATT CCAGGAATGC 000480 000481 CTACAGTTAT TCCCCCTGGA CTTACTCGAG AACAAGAAAG AGCTTATATA GGTAAATATA CGTTCTGCAT CCAAATGCAC 000560 000561 TTTGAGATTG TTACGATTTA TTCTGAGCAA GATCTGCATT TTTTGAAAGT TTGAGATTGT AGTTATCTTT TTTGAGATGA 000640 000641 GATACTTTCA CGACTTTGGT ATCATCTGTC AGTTTTTGCC CAGTGAGTTC TGCATTTGCA GCTCCTTGTT TTGGTCTGTT 000720 000721 CGTAACTGCA GTGTTCTCCA TGAGTATCAG GAAGGTAGGG TTTCACTTAG GAGTAAGAAC AGTCCCCAGT CCAGCAGCCA 000800 000801 CCCTTTTCAG CTGCTGTTCA TTGCCAGTTG ATGAGGTGAG TGTCATCTGC CTCTCTGGAC AGGCCCCAGT GGAGAACACC 000880 000881 GCAGGTACTG TAAACCAAGT ACTTTTCACA GCGTGGCCTT TCACCATAAT TTTATATTTC TCCCCCTAAA ATGTGGTCTT 000960 000961 TTACTTTTTA TAGGTACTTT CTG |
Predicted Small Protein
| Name | NONHSAT022023_smProtein_371:613 |
| Length | 81 |
| Molecular weight | 9287.6623 |
| Aromaticity | 0.1 |
| Instability index | 61.28125 |
| Isoelectric point | 9.24969482422 |
| Runs | 13 |
| Runs residual | 0.0236842105263 |
| Runs probability | 0.020266873208 |
| Amino acid sequence | MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI QMHFEIVTIYSEQDLHFLKV |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEELEELLLLLLELLLLLLHHHHHHHHLLEEEEE EEEEEEEEEELLLEEEEEEL |
| PRMN | - |
| PiMo | - |
