Difference between revisions of "NONHSAT022817"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGATAGGACTTGGCTCTGCCTGGCCACTCCTCCTCCAATGGGGGAATTCCTGGGCTTGCCTCTGTCTTGGCTCCAGCTCAGGTGTCAGTCTCAGCCCTGTCCCAGCCAGGAACAATGGGCCAGGCAGGGCCAGTCACCCCCTGTCCCTGGGGGCTCCACCCACGGCCCTGGACTATTTTCAGCCCTTGCAGATGGAGTCAGAAGAGGATTTTCCACTCCCAGTACAATGACTGCCCTGGACCATTGTCCAGCAGTGACGCGGGGGACCTGCCTGCCCCAAAATATCTCCTGCCCCTAGTTTCCAAGCCTCTTTGCCCTGCTCCTCACCTCCTGGCCCTGCTCCTTACCTCCCCACCCTGATGTCATTTCCTGGGGCTCTTAACTCCTGAAGGCCATTGTGAAACATCACGTGAGGCTCCTGGGAGACACAACCAGTTGGAATGAGTTTTCCCTCCTGGCAGGGACCCCAGGGATTGTTTGGCTGCTTAGTGGGACTGGTGGCCCAGAGAGGGCTGTGCCTTACCCAGTCACACAGCAGTCAGTGTGAAGCTTAGGTGTAAGCCCAGGGCTCTTTGGCTGCTCCCACTGCCCCAGCCAACTTCATTAGCTCCAGTCTGTGGCTCCTGGACTGGAGCTACAGTGGTGAGAGCTCACCACTGAGCTTCCTGGGATGGGCACCTGGGATAGCAGCCCAAGTGGTGTGGGTGGAGAGGTGCAGCTCATGCTCTGACCTTGGAGTGAGCCCAGTGCAGGGGCCTGACCTTAAACCCTTTCTCCCCACTGAGTCCCATTTTTACCAAATGTGGCTGTTAGGAACTGAATGTTTGTGTCCCCCGCCCCACAAATCCATATGTCAAAATCCCAACTGCCAAGGTGATGGTATTAGAAGGTGGGGCCTTTGGGAAGTAACCAGGTCCTAAGGGTGCAGCCCTCATGAATGGGTTTAGTGCCCTTACAGAATGGACCCCAGAGAGCTCCTCACCCTCTTTCCACCATGTGAGGATATAATGAGAAGTTGGCAGTCTGCAACCTGGAAGAGGTCCCTCACCAGATCCCAACCATGCTGGCACCCCGATCTTAGACTTCCAGTCTTCAGAATGGTGAGAAATAAATGTCTCTTGTTTCTAATCCACCCAGTCGGTGGCATTTTGTTATAGCAGCCCACGCTGACTGTGACTGAACTCAGGGTGACAGAGCAGCAGCTCTGGGGCAAAGGGGAGGGTGGGGGCCACAGGGCAGCTGATGCAGGAGCAGGGCTCTGGCACAGTTCAGCCATCACCAATTCTGGGACTGCAAATTCAGTTTCTTCATCTGGAAAATTGAACTGGTAATACCAATACCTCTTTTCCCGGTTTACTAGACAGAGACAATGCAGTGAGGCACAAACATGCAACTGTTTGATTTTCCTCCCACCCATGCTCCCTGCTCAGTGACGTGTGATTTTCCTTTCCCATCCATAAACTGCGCATTTGGCAAACTCCAAACTTTTGAGTCACTTTTGGGTAACAAAGTCAGGTTTAAGATTTCCATCGCCTGCTTAATTGAATGCTCACCTGTCCTCTTCCCCCATGCTGTGAGGACCTTCATCACTCCTCTTCTGGGTCCCTCTCTCCTCTAGGTGTTGGGGCAGGGTGGGGAGGAAAGGGACCAATGTGTCTTTCCTGGTGATGCTACAGCCCTCTCTTGCTGACCTTGCTTCCTGGGCCATCAGTGCCCCCTGCACAGAACTCTCCAAACATCAGTCCACACCTTTGTAAAAACAGTCTCTCCGCTAAGCTATCCAAAAATGACCTGATTAGAGTGTGCAACGTCTTTCCTGCTGGGACTCTGACTGATACCCTGGTCTCCCTGAGTGATTTTCCTGCACACCCTGCTGGGGATGTGGAAGCCTGTCCCCCTCCCACCCCACACCCCACACTTGGCTGAGATCTCACAGTGGCAAAGATGTCTTTGAATCCATGGTGCCCAGGGTTCAGCGTGTAGAGTGAGGTGGGGTGTGTAGAGAGCTGGGGCAAGGAACCCTGAGAAGATGTCTTACCCCAGTTGTTTCCAGGTTTCTTTAGAAAGCGGGCTATTTTACCCCATGTGTCCTCAGATTTATGTCCTGGAACCAAATTCCAAATCAGCAGCCACATGAAAAGTCCCCTCCTCTCTGGCGTGGAATTAAACTGTTAGACCTGCCTTTGTGACCAAAGCAATTGTAAAATGTGGGGGAGGAAATTAAAAGCCTGCCACCTTAGTCCAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CGATAGGACTTGGCTCTGCCTGGCCACTCCTCCTCCAATGGGGGAATTCCTGGGCTTGCCTCTGTCTTGGCTCCAGCTCAGGTGTCAGTCTCAGCCCTGTCCCAGCCAGGAACAATGGGCCAGGCAGGGCCAGTCACCCCCTGTCCCTGGGGGCTCCACCCACGGCCCTGGACTATTTTCAGCCCTTGCAGATGGAGTCAGAAGAGGATTTTCCACTCCCAGTACAATGACTGCCCTGGACCATTGTCCAGCAGTGACGCGGGGGACCTGCCTGCCCCAAAATATCTCCTGCCCCTAGTTTCCAAGCCTCTTTGCCCTGCTCCTCACCTCCTGGCCCTGCTCCTTACCTCCCCACCCTGATGTCATTTCCTGGGGCTCTTAACTCCTGAAGGCCATTGTGAAACATCACGTGAGGCTCCTGGGAGACACAACCAGTTGGAATGAGTTTTCCCTCCTGGCAGGGACCCCAGGGATTGTTTGGCTGCTTAGTGGGACTGGTGGCCCAGAGAGGGCTGTGCCTTACCCAGTCACACAGCAGTCAGTGTGAAGCTTAGGTGTAAGCCCAGGGCTCTTTGGCTGCTCCCACTGCCCCAGCCAACTTCATTAGCTCCAGTCTGTGGCTCCTGGACTGGAGCTACAGTGGTGAGAGCTCACCACTGAGCTTCCTGGGATGGGCACCTGGGATAGCAGCCCAAGTGGTGTGGGTGGAGAGGTGCAGCTCATGCTCTGACCTTGGAGTGAGCCCAGTGCAGGGGCCTGACCTTAAACCCTTTCTCCCCACTGAGTCCCATTTTTACCAAATGTGGCTGTTAGGAACTGAATGTTTGTGTCCCCCGCCCCACAAATCCATATGTCAAAATCCCAACTGCCAAGGTGATGGTATTAGAAGGTGGGGCCTTTGGGAAGTAACCAGGTCCTAAGGGTGCAGCCCTCATGAATGGGTTTAGTGCCCTTACAGAATGGACCCCAGAGAGCTCCTCACCCTCTTTCCACCATGTGAGGATATAATGAGAAGTTGGCAGTCTGCAACCTGGAAGAGGTCCCTCACCAGATCCCAACCATGCTGGCACCCCGATCTTAGACTTCCAGTCTTCAGAATGGTGAGAAATAAATGTCTCTTGTTTCTAATCCACCCAGTCGGTGGCATTTTGTTATAGCAGCCCACGCTGACTGTGACTGAACTCAGGGTGACAGAGCAGCAGCTCTGGGGCAAAGGGGAGGGTGGGGGCCACAGGGCAGCTGATGCAGGAGCAGGGCTCTGGCACAGTTCAGCCATCACCAATTCTGGGACTGCAAATTCAGTTTCTTCATCTGGAAAATTGAACTGGTAATACCAATACCTCTTTTCCCGGTTTACTAGACAGAGACAATGCAGTGAGGCACAAACATGCAACTGTTTGATTTTCCTCCCACCCATGCTCCCTGCTCAGTGACGTGTGATTTTCCTTTCCCATCCATAAACTGCGCATTTGGCAAACTCCAAACTTTTGAGTCACTTTTGGGTAACAAAGTCAGGTTTAAGATTTCCATCGCCTGCTTAATTGAATGCTCACCTGTCCTCTTCCCCCATGCTGTGAGGACCTTCATCACTCCTCTTCTGGGTCCCTCTCTCCTCTAGGTGTTGGGGCAGGGTGGGGAGGAAAGGGACCAATGTGTCTTTCCTGGTGATGCTACAGCCCTCTCTTGCTGACCTTGCTTCCTGGGCCATCAGTGCCCCCTGCACAGAACTCTCCAAACATCAGTCCACACCTTTGTAAAAACAGTCTCTCCGCTAAGCTATCCAAAAATGACCTGATTAGAGTGTGCAACGTCTTTCCTGCTGGGACTCTGACTGATACCCTGGTCTCCCTGAGTGATTTTCCTGCACACCCTGCTGGGGATGTGGAAGCCTGTCCCCCTCCCACCCCACACCCCACACTTGGCTGAGATCTCACAGTGGCAAAGATGTCTTTGAATCCATGGTGCCCAGGGTTCAGCGTGTAGAGTGAGGTGGGGTGTGTAGAGAGCTGGGGCAAGGAACCCTGAGAAGATGTCTTACCCCAGTTGTTTCCAGGTTTCTTTAGAAAGCGGGCTATTTTACCCCATGTGTCCTCAGATTTATGTCCTGGAACCAAATTCCAAATCAGCAGCCACATGAAAAGTCCCCTCCTCTCTGGCGTGGAATTAAACTGTTAGACCTGCCTTTGTGACCAAAGCAATTGTAAAATGTGGGGGAGGAAATTAAAAGCCTGCCACCTTAGTCCAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG009013]] |
Revision as of 05:48, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT022817 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2262 nt |
Genomic location |
chr11+:72951137..72953380 |
Exon number |
1 |
Exons |
72951137..72953380 |
Genome context |
|
Sequence |
000001 CGATAGGACT TGGCTCTGCC TGGCCACTCC TCCTCCAATG GGGGAATTCC TGGGCTTGCC TCTGTCTTGG CTCCAGCTCA 000080
000081 GGTGTCAGTC TCAGCCCTGT CCCAGCCAGG AACAATGGGC CAGGCAGGGC CAGTCACCCC CTGTCCCTGG GGGCTCCACC 000160 000161 CACGGCCCTG GACTATTTTC AGCCCTTGCA GATGGAGTCA GAAGAGGATT TTCCACTCCC AGTACAATGA CTGCCCTGGA 000240 000241 CCATTGTCCA GCAGTGACGC GGGGGACCTG CCTGCCCCAA AATATCTCCT GCCCCTAGTT TCCAAGCCTC TTTGCCCTGC 000320 000321 TCCTCACCTC CTGGCCCTGC TCCTTACCTC CCCACCCTGA TGTCATTTCC TGGGGCTCTT AACTCCTGAA GGCCATTGTG 000400 000401 AAACATCACG TGAGGCTCCT GGGAGACACA ACCAGTTGGA ATGAGTTTTC CCTCCTGGCA GGGACCCCAG GGATTGTTTG 000480 000481 GCTGCTTAGT GGGACTGGTG GCCCAGAGAG GGCTGTGCCT TACCCAGTCA CACAGCAGTC AGTGTGAAGC TTAGGTGTAA 000560 000561 GCCCAGGGCT CTTTGGCTGC TCCCACTGCC CCAGCCAACT TCATTAGCTC CAGTCTGTGG CTCCTGGACT GGAGCTACAG 000640 000641 TGGTGAGAGC TCACCACTGA GCTTCCTGGG ATGGGCACCT GGGATAGCAG CCCAAGTGGT GTGGGTGGAG AGGTGCAGCT 000720 000721 CATGCTCTGA CCTTGGAGTG AGCCCAGTGC AGGGGCCTGA CCTTAAACCC TTTCTCCCCA CTGAGTCCCA TTTTTACCAA 000800 000801 ATGTGGCTGT TAGGAACTGA ATGTTTGTGT CCCCCGCCCC ACAAATCCAT ATGTCAAAAT CCCAACTGCC AAGGTGATGG 000880 000881 TATTAGAAGG TGGGGCCTTT GGGAAGTAAC CAGGTCCTAA GGGTGCAGCC CTCATGAATG GGTTTAGTGC CCTTACAGAA 000960 000961 TGGACCCCAG AGAGCTCCTC ACCCTCTTTC CACCATGTGA GGATATAATG AGAAGTTGGC AGTCTGCAAC CTGGAAGAGG 001040 001041 TCCCTCACCA GATCCCAACC ATGCTGGCAC CCCGATCTTA GACTTCCAGT CTTCAGAATG GTGAGAAATA AATGTCTCTT 001120 001121 GTTTCTAATC CACCCAGTCG GTGGCATTTT GTTATAGCAG CCCACGCTGA CTGTGACTGA ACTCAGGGTG ACAGAGCAGC 001200 001201 AGCTCTGGGG CAAAGGGGAG GGTGGGGGCC ACAGGGCAGC TGATGCAGGA GCAGGGCTCT GGCACAGTTC AGCCATCACC 001280 001281 AATTCTGGGA CTGCAAATTC AGTTTCTTCA TCTGGAAAAT TGAACTGGTA ATACCAATAC CTCTTTTCCC GGTTTACTAG 001360 001361 ACAGAGACAA TGCAGTGAGG CACAAACATG CAACTGTTTG ATTTTCCTCC CACCCATGCT CCCTGCTCAG TGACGTGTGA 001440 001441 TTTTCCTTTC CCATCCATAA ACTGCGCATT TGGCAAACTC CAAACTTTTG AGTCACTTTT GGGTAACAAA GTCAGGTTTA 001520 001521 AGATTTCCAT CGCCTGCTTA ATTGAATGCT CACCTGTCCT CTTCCCCCAT GCTGTGAGGA CCTTCATCAC TCCTCTTCTG 001600 001601 GGTCCCTCTC TCCTCTAGGT GTTGGGGCAG GGTGGGGAGG AAAGGGACCA ATGTGTCTTT CCTGGTGATG CTACAGCCCT 001680 001681 CTCTTGCTGA CCTTGCTTCC TGGGCCATCA GTGCCCCCTG CACAGAACTC TCCAAACATC AGTCCACACC TTTGTAAAAA 001760 001761 CAGTCTCTCC GCTAAGCTAT CCAAAAATGA CCTGATTAGA GTGTGCAACG TCTTTCCTGC TGGGACTCTG ACTGATACCC 001840 001841 TGGTCTCCCT GAGTGATTTT CCTGCACACC CTGCTGGGGA TGTGGAAGCC TGTCCCCCTC CCACCCCACA CCCCACACTT 001920 001921 GGCTGAGATC TCACAGTGGC AAAGATGTCT TTGAATCCAT GGTGCCCAGG GTTCAGCGTG TAGAGTGAGG TGGGGTGTGT 002000 002001 AGAGAGCTGG GGCAAGGAAC CCTGAGAAGA TGTCTTACCC CAGTTGTTTC CAGGTTTCTT TAGAAAGCGG GCTATTTTAC 002080 002081 CCCATGTGTC CTCAGATTTA TGTCCTGGAA CCAAATTCCA AATCAGCAGC CACATGAAAA GTCCCCTCCT CTCTGGCGTG 002160 002161 GAATTAAACT GTTAGACCTG CCTTTGTGAC CAAAGCAATT GTAAAATGTG GGGGAGGAAA TTAAAAGCCT GCCACCTTAG 002240 002241 TCCAAAAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT022817_smProtein_959:1156 |
Length | 66 |
Molecular weight | 7717.1646 |
Aromaticity | 0.0923076923077 |
Instability index | 79.5092307692 |
Isoelectric point | 9.60382080078 |
Runs | 11 |
Runs residual | 0.0189423076923 |
Runs probability | 0.028745322863 |
Amino acid sequence | MDPRELLTLFPPCEDIMRSWQSATWKRSLTRSQPCWHPDLRLPVFRMVRNKCLLFLIHPV GGILL |
Secondary structure | LLHHHHLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHLLLLLEEEEEELL LLEEL |
PRMN | - |
PiMo | - |