Difference between revisions of "NONHSAT022817"

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sequence = <dnaseq>CGATAGGACTTGGCTCTGCCTGGCCACTCCTCCTCCAATGGGGGAATTCCTGGGCTTGCCTCTGTCTTGGCTCCAGCTCAGGTGTCAGTCTCAGCCCTGTCCCAGCCAGGAACAATGGGCCAGGCAGGGCCAGTCACCCCCTGTCCCTGGGGGCTCCACCCACGGCCCTGGACTATTTTCAGCCCTTGCAGATGGAGTCAGAAGAGGATTTTCCACTCCCAGTACAATGACTGCCCTGGACCATTGTCCAGCAGTGACGCGGGGGACCTGCCTGCCCCAAAATATCTCCTGCCCCTAGTTTCCAAGCCTCTTTGCCCTGCTCCTCACCTCCTGGCCCTGCTCCTTACCTCCCCACCCTGATGTCATTTCCTGGGGCTCTTAACTCCTGAAGGCCATTGTGAAACATCACGTGAGGCTCCTGGGAGACACAACCAGTTGGAATGAGTTTTCCCTCCTGGCAGGGACCCCAGGGATTGTTTGGCTGCTTAGTGGGACTGGTGGCCCAGAGAGGGCTGTGCCTTACCCAGTCACACAGCAGTCAGTGTGAAGCTTAGGTGTAAGCCCAGGGCTCTTTGGCTGCTCCCACTGCCCCAGCCAACTTCATTAGCTCCAGTCTGTGGCTCCTGGACTGGAGCTACAGTGGTGAGAGCTCACCACTGAGCTTCCTGGGATGGGCACCTGGGATAGCAGCCCAAGTGGTGTGGGTGGAGAGGTGCAGCTCATGCTCTGACCTTGGAGTGAGCCCAGTGCAGGGGCCTGACCTTAAACCCTTTCTCCCCACTGAGTCCCATTTTTACCAAATGTGGCTGTTAGGAACTGAATGTTTGTGTCCCCCGCCCCACAAATCCATATGTCAAAATCCCAACTGCCAAGGTGATGGTATTAGAAGGTGGGGCCTTTGGGAAGTAACCAGGTCCTAAGGGTGCAGCCCTCATGAATGGGTTTAGTGCCCTTACAGAATGGACCCCAGAGAGCTCCTCACCCTCTTTCCACCATGTGAGGATATAATGAGAAGTTGGCAGTCTGCAACCTGGAAGAGGTCCCTCACCAGATCCCAACCATGCTGGCACCCCGATCTTAGACTTCCAGTCTTCAGAATGGTGAGAAATAAATGTCTCTTGTTTCTAATCCACCCAGTCGGTGGCATTTTGTTATAGCAGCCCACGCTGACTGTGACTGAACTCAGGGTGACAGAGCAGCAGCTCTGGGGCAAAGGGGAGGGTGGGGGCCACAGGGCAGCTGATGCAGGAGCAGGGCTCTGGCACAGTTCAGCCATCACCAATTCTGGGACTGCAAATTCAGTTTCTTCATCTGGAAAATTGAACTGGTAATACCAATACCTCTTTTCCCGGTTTACTAGACAGAGACAATGCAGTGAGGCACAAACATGCAACTGTTTGATTTTCCTCCCACCCATGCTCCCTGCTCAGTGACGTGTGATTTTCCTTTCCCATCCATAAACTGCGCATTTGGCAAACTCCAAACTTTTGAGTCACTTTTGGGTAACAAAGTCAGGTTTAAGATTTCCATCGCCTGCTTAATTGAATGCTCACCTGTCCTCTTCCCCCATGCTGTGAGGACCTTCATCACTCCTCTTCTGGGTCCCTCTCTCCTCTAGGTGTTGGGGCAGGGTGGGGAGGAAAGGGACCAATGTGTCTTTCCTGGTGATGCTACAGCCCTCTCTTGCTGACCTTGCTTCCTGGGCCATCAGTGCCCCCTGCACAGAACTCTCCAAACATCAGTCCACACCTTTGTAAAAACAGTCTCTCCGCTAAGCTATCCAAAAATGACCTGATTAGAGTGTGCAACGTCTTTCCTGCTGGGACTCTGACTGATACCCTGGTCTCCCTGAGTGATTTTCCTGCACACCCTGCTGGGGATGTGGAAGCCTGTCCCCCTCCCACCCCACACCCCACACTTGGCTGAGATCTCACAGTGGCAAAGATGTCTTTGAATCCATGGTGCCCAGGGTTCAGCGTGTAGAGTGAGGTGGGGTGTGTAGAGAGCTGGGGCAAGGAACCCTGAGAAGATGTCTTACCCCAGTTGTTTCCAGGTTTCTTTAGAAAGCGGGCTATTTTACCCCATGTGTCCTCAGATTTATGTCCTGGAACCAAATTCCAAATCAGCAGCCACATGAAAAGTCCCCTCCTCTCTGGCGTGGAATTAAACTGTTAGACCTGCCTTTGTGACCAAAGCAATTGTAAAATGTGGGGGAGGAAATTAAAAGCCTGCCACCTTAGTCCAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>CGATAGGACTTGGCTCTGCCTGGCCACTCCTCCTCCAATGGGGGAATTCCTGGGCTTGCCTCTGTCTTGGCTCCAGCTCAGGTGTCAGTCTCAGCCCTGTCCCAGCCAGGAACAATGGGCCAGGCAGGGCCAGTCACCCCCTGTCCCTGGGGGCTCCACCCACGGCCCTGGACTATTTTCAGCCCTTGCAGATGGAGTCAGAAGAGGATTTTCCACTCCCAGTACAATGACTGCCCTGGACCATTGTCCAGCAGTGACGCGGGGGACCTGCCTGCCCCAAAATATCTCCTGCCCCTAGTTTCCAAGCCTCTTTGCCCTGCTCCTCACCTCCTGGCCCTGCTCCTTACCTCCCCACCCTGATGTCATTTCCTGGGGCTCTTAACTCCTGAAGGCCATTGTGAAACATCACGTGAGGCTCCTGGGAGACACAACCAGTTGGAATGAGTTTTCCCTCCTGGCAGGGACCCCAGGGATTGTTTGGCTGCTTAGTGGGACTGGTGGCCCAGAGAGGGCTGTGCCTTACCCAGTCACACAGCAGTCAGTGTGAAGCTTAGGTGTAAGCCCAGGGCTCTTTGGCTGCTCCCACTGCCCCAGCCAACTTCATTAGCTCCAGTCTGTGGCTCCTGGACTGGAGCTACAGTGGTGAGAGCTCACCACTGAGCTTCCTGGGATGGGCACCTGGGATAGCAGCCCAAGTGGTGTGGGTGGAGAGGTGCAGCTCATGCTCTGACCTTGGAGTGAGCCCAGTGCAGGGGCCTGACCTTAAACCCTTTCTCCCCACTGAGTCCCATTTTTACCAAATGTGGCTGTTAGGAACTGAATGTTTGTGTCCCCCGCCCCACAAATCCATATGTCAAAATCCCAACTGCCAAGGTGATGGTATTAGAAGGTGGGGCCTTTGGGAAGTAACCAGGTCCTAAGGGTGCAGCCCTCATGAATGGGTTTAGTGCCCTTACAGAATGGACCCCAGAGAGCTCCTCACCCTCTTTCCACCATGTGAGGATATAATGAGAAGTTGGCAGTCTGCAACCTGGAAGAGGTCCCTCACCAGATCCCAACCATGCTGGCACCCCGATCTTAGACTTCCAGTCTTCAGAATGGTGAGAAATAAATGTCTCTTGTTTCTAATCCACCCAGTCGGTGGCATTTTGTTATAGCAGCCCACGCTGACTGTGACTGAACTCAGGGTGACAGAGCAGCAGCTCTGGGGCAAAGGGGAGGGTGGGGGCCACAGGGCAGCTGATGCAGGAGCAGGGCTCTGGCACAGTTCAGCCATCACCAATTCTGGGACTGCAAATTCAGTTTCTTCATCTGGAAAATTGAACTGGTAATACCAATACCTCTTTTCCCGGTTTACTAGACAGAGACAATGCAGTGAGGCACAAACATGCAACTGTTTGATTTTCCTCCCACCCATGCTCCCTGCTCAGTGACGTGTGATTTTCCTTTCCCATCCATAAACTGCGCATTTGGCAAACTCCAAACTTTTGAGTCACTTTTGGGTAACAAAGTCAGGTTTAAGATTTCCATCGCCTGCTTAATTGAATGCTCACCTGTCCTCTTCCCCCATGCTGTGAGGACCTTCATCACTCCTCTTCTGGGTCCCTCTCTCCTCTAGGTGTTGGGGCAGGGTGGGGAGGAAAGGGACCAATGTGTCTTTCCTGGTGATGCTACAGCCCTCTCTTGCTGACCTTGCTTCCTGGGCCATCAGTGCCCCCTGCACAGAACTCTCCAAACATCAGTCCACACCTTTGTAAAAACAGTCTCTCCGCTAAGCTATCCAAAAATGACCTGATTAGAGTGTGCAACGTCTTTCCTGCTGGGACTCTGACTGATACCCTGGTCTCCCTGAGTGATTTTCCTGCACACCCTGCTGGGGATGTGGAAGCCTGTCCCCCTCCCACCCCACACCCCACACTTGGCTGAGATCTCACAGTGGCAAAGATGTCTTTGAATCCATGGTGCCCAGGGTTCAGCGTGTAGAGTGAGGTGGGGTGTGTAGAGAGCTGGGGCAAGGAACCCTGAGAAGATGTCTTACCCCAGTTGTTTCCAGGTTTCTTTAGAAAGCGGGCTATTTTACCCCATGTGTCCTCAGATTTATGTCCTGGAACCAAATTCCAAATCAGCAGCCACATGAAAAGTCCCCTCCTCTCTGGCGTGGAATTAAACTGTTAGACCTGCCTTTGTGACCAAAGCAATTGTAAAATGTGGGGGAGGAAATTAAAAGCCTGCCACCTTAGTCCAAAAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG009013]]

Revision as of 05:48, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT022817

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2262 nt

Genomic location

chr11+:72951137..72953380

Exon number

1

Exons

72951137..72953380

Genome context

Sequence
000001 CGATAGGACT TGGCTCTGCC TGGCCACTCC TCCTCCAATG GGGGAATTCC TGGGCTTGCC TCTGTCTTGG CTCCAGCTCA 000080
000081 GGTGTCAGTC TCAGCCCTGT CCCAGCCAGG AACAATGGGC CAGGCAGGGC CAGTCACCCC CTGTCCCTGG GGGCTCCACC 000160
000161 CACGGCCCTG GACTATTTTC AGCCCTTGCA GATGGAGTCA GAAGAGGATT TTCCACTCCC AGTACAATGA CTGCCCTGGA 000240
000241 CCATTGTCCA GCAGTGACGC GGGGGACCTG CCTGCCCCAA AATATCTCCT GCCCCTAGTT TCCAAGCCTC TTTGCCCTGC 000320
000321 TCCTCACCTC CTGGCCCTGC TCCTTACCTC CCCACCCTGA TGTCATTTCC TGGGGCTCTT AACTCCTGAA GGCCATTGTG 000400
000401 AAACATCACG TGAGGCTCCT GGGAGACACA ACCAGTTGGA ATGAGTTTTC CCTCCTGGCA GGGACCCCAG GGATTGTTTG 000480
000481 GCTGCTTAGT GGGACTGGTG GCCCAGAGAG GGCTGTGCCT TACCCAGTCA CACAGCAGTC AGTGTGAAGC TTAGGTGTAA 000560
000561 GCCCAGGGCT CTTTGGCTGC TCCCACTGCC CCAGCCAACT TCATTAGCTC CAGTCTGTGG CTCCTGGACT GGAGCTACAG 000640
000641 TGGTGAGAGC TCACCACTGA GCTTCCTGGG ATGGGCACCT GGGATAGCAG CCCAAGTGGT GTGGGTGGAG AGGTGCAGCT 000720
000721 CATGCTCTGA CCTTGGAGTG AGCCCAGTGC AGGGGCCTGA CCTTAAACCC TTTCTCCCCA CTGAGTCCCA TTTTTACCAA 000800
000801 ATGTGGCTGT TAGGAACTGA ATGTTTGTGT CCCCCGCCCC ACAAATCCAT ATGTCAAAAT CCCAACTGCC AAGGTGATGG 000880
000881 TATTAGAAGG TGGGGCCTTT GGGAAGTAAC CAGGTCCTAA GGGTGCAGCC CTCATGAATG GGTTTAGTGC CCTTACAGAA 000960
000961 TGGACCCCAG AGAGCTCCTC ACCCTCTTTC CACCATGTGA GGATATAATG AGAAGTTGGC AGTCTGCAAC CTGGAAGAGG 001040
001041 TCCCTCACCA GATCCCAACC ATGCTGGCAC CCCGATCTTA GACTTCCAGT CTTCAGAATG GTGAGAAATA AATGTCTCTT 001120
001121 GTTTCTAATC CACCCAGTCG GTGGCATTTT GTTATAGCAG CCCACGCTGA CTGTGACTGA ACTCAGGGTG ACAGAGCAGC 001200
001201 AGCTCTGGGG CAAAGGGGAG GGTGGGGGCC ACAGGGCAGC TGATGCAGGA GCAGGGCTCT GGCACAGTTC AGCCATCACC 001280
001281 AATTCTGGGA CTGCAAATTC AGTTTCTTCA TCTGGAAAAT TGAACTGGTA ATACCAATAC CTCTTTTCCC GGTTTACTAG 001360
001361 ACAGAGACAA TGCAGTGAGG CACAAACATG CAACTGTTTG ATTTTCCTCC CACCCATGCT CCCTGCTCAG TGACGTGTGA 001440
001441 TTTTCCTTTC CCATCCATAA ACTGCGCATT TGGCAAACTC CAAACTTTTG AGTCACTTTT GGGTAACAAA GTCAGGTTTA 001520
001521 AGATTTCCAT CGCCTGCTTA ATTGAATGCT CACCTGTCCT CTTCCCCCAT GCTGTGAGGA CCTTCATCAC TCCTCTTCTG 001600
001601 GGTCCCTCTC TCCTCTAGGT GTTGGGGCAG GGTGGGGAGG AAAGGGACCA ATGTGTCTTT CCTGGTGATG CTACAGCCCT 001680
001681 CTCTTGCTGA CCTTGCTTCC TGGGCCATCA GTGCCCCCTG CACAGAACTC TCCAAACATC AGTCCACACC TTTGTAAAAA 001760
001761 CAGTCTCTCC GCTAAGCTAT CCAAAAATGA CCTGATTAGA GTGTGCAACG TCTTTCCTGC TGGGACTCTG ACTGATACCC 001840
001841 TGGTCTCCCT GAGTGATTTT CCTGCACACC CTGCTGGGGA TGTGGAAGCC TGTCCCCCTC CCACCCCACA CCCCACACTT 001920
001921 GGCTGAGATC TCACAGTGGC AAAGATGTCT TTGAATCCAT GGTGCCCAGG GTTCAGCGTG TAGAGTGAGG TGGGGTGTGT 002000
002001 AGAGAGCTGG GGCAAGGAAC CCTGAGAAGA TGTCTTACCC CAGTTGTTTC CAGGTTTCTT TAGAAAGCGG GCTATTTTAC 002080
002081 CCCATGTGTC CTCAGATTTA TGTCCTGGAA CCAAATTCCA AATCAGCAGC CACATGAAAA GTCCCCTCCT CTCTGGCGTG 002160
002161 GAATTAAACT GTTAGACCTG CCTTTGTGAC CAAAGCAATT GTAAAATGTG GGGGAGGAAA TTAAAAGCCT GCCACCTTAG 002240
002241 TCCAAAAAAA AAAAAAAAAA AA
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Predicted Small Protein

Name NONHSAT022817_smProtein_959:1156
Length 66
Molecular weight 7717.1646
Aromaticity 0.0923076923077
Instability index 79.5092307692
Isoelectric point 9.60382080078
Runs 11
Runs residual 0.0189423076923
Runs probability 0.028745322863
Amino acid sequence MDPRELLTLFPPCEDIMRSWQSATWKRSLTRSQPCWHPDLRLPVFRMVRNKCLLFLIHPV
GGILL
Secondary structure LLHHHHLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLHHHHLLLLLEEEEEELL
LLEEL
PRMN -
PiMo -